EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000019452 (Gene tree)
Gene ID: 108277343
Gene Symbol: npm1
Alias: npm1|sb:cb487
Full Name: nucleophosmin-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 5595 bases
Position: chr16:21752880-21758474
Accession: 108277343
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000028757	Nucleoplasmin	PF03066.15	3.1e-36	1	1
ENSIPUP00000028785	Nucleoplasmin	PF03066.15	7.1e-36	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000029956	-	777	-	ENSIPUP00000028785	258 (aa)	-	-
ENSIPUT00000029930	-	1790	XM_017489983	ENSIPUP00000028757	292 (aa)	XP_017345472	W5U7P6

Gene Model

Click here to download ENSIPUG00000019452's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000019452's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000019452	npm1	98	41.137	ENSIPUG00000020165	npm1b	97	41.311

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000019452	npm1	99	60.333	ENSAPOG00000002813	npm1a	98	60.000	Acanthochromis_polyacanthus
ENSIPUG00000019452	npm1	95	59.247	ENSACIG00000014201	npm1a	99	60.616	Amphilophus_citrinellus
ENSIPUG00000019452	npm1	90	56.439	ENSAOCG00000004978	npm1a	100	57.197	Amphiprion_ocellaris
ENSIPUG00000019452	npm1	99	63.880	ENSAPEG00000008594	npm1a	98	62.876	Amphiprion_percula
ENSIPUG00000019452	npm1	99	62.379	ENSATEG00000008885	npm1a	98	62.701	Anabas_testudineus
ENSIPUG00000019452	npm1	96	58.333	ENSACLG00000008376	npm1a	94	58.681	Astatotilapia_calliptera
ENSIPUG00000019452	npm1	99	64.948	ENSAMXG00000010155	npm1a	98	68.385	Astyanax_mexicanus
ENSIPUG00000019452	npm1	99	51.953	ENSCSEG00000011165	npm1a	97	51.379	Cynoglossus_semilaevis
ENSIPUG00000019452	npm1	99	58.249	ENSCVAG00000008960	npm1a	98	58.249	Cyprinodon_variegatus
ENSIPUG00000019452	npm1	99	68.151	ENSDARG00000014329	npm1a	99	83.333	Danio_rerio
ENSIPUG00000019452	npm1	99	65.541	ENSELUG00000013705	npm1a	98	63.545	Esox_lucius
ENSIPUG00000019452	npm1	99	61.842	ENSFHEG00000012496	npm1a	98	60.855	Fundulus_heteroclitus
ENSIPUG00000019452	npm1	99	57.566	ENSGAFG00000013059	npm1a	98	57.237	Gambusia_affinis
ENSIPUG00000019452	npm1	99	59.396	ENSGACG00000020319	npm1a	98	59.396	Gasterosteus_aculeatus
ENSIPUG00000019452	npm1	98	61.076	ENSHBUG00000000776	npm1a	98	60.759	Haplochromis_burtoni
ENSIPUG00000019452	npm1	99	54.545	ENSHCOG00000001059	npm1a	96	54.924	Hippocampus_comes
ENSIPUG00000019452	npm1	99	57.912	ENSKMAG00000010709	npm1a	98	57.525	Kryptolebias_marmoratus
ENSIPUG00000019452	npm1	99	61.462	ENSLBEG00000008793	npm1a	98	61.258	Labrus_bergylta
ENSIPUG00000019452	npm1	85	58.974	ENSLOCG00000009683	npm1a	98	61.172	Lepisosteus_oculatus
ENSIPUG00000019452	npm1	99	62.290	ENSMAMG00000009344	npm1a	81	61.953	Mastacembelus_armatus
ENSIPUG00000019452	npm1	98	61.783	ENSMZEG00005013717	npm1a	98	63.057	Maylandia_zebra
ENSIPUG00000019452	npm1	95	61.702	ENSMMOG00000007980	npm1a	99	62.766	Mola_mola
ENSIPUG00000019452	npm1	99	59.076	ENSMALG00000001146	npm1a	98	60.066	Monopterus_albus
ENSIPUG00000019452	npm1	98	58.654	ENSNBRG00000013172	npm1a	98	58.654	Neolamprologus_brichardi
ENSIPUG00000019452	npm1	99	57.616	ENSONIG00000001860	npm1a	97	59.736	Oreochromis_niloticus
ENSIPUG00000019452	npm1	99	58.784	ENSORLG00000010179	npm1a	98	59.459	Oryzias_latipes
ENSIPUG00000019452	npm1	99	57.770	ENSORLG00020020817	npm1a	98	58.108	Oryzias_latipes_hni
ENSIPUG00000019452	npm1	99	58.784	ENSORLG00015003439	npm1a	98	59.459	Oryzias_latipes_hsok
ENSIPUG00000019452	npm1	99	58.923	ENSOMEG00000007083	npm1a	98	58.923	Oryzias_melastigma
ENSIPUG00000019452	npm1	99	57.616	ENSPKIG00000023943	npm1a	98	57.616	Paramormyrops_kingsleyae
ENSIPUG00000019452	npm1	99	55.290	ENSPMGG00000011716	npm1a	97	55.631	Periophthalmus_magnuspinnatus
ENSIPUG00000019452	npm1	99	58.882	ENSPFOG00000019173	npm1a	98	59.539	Poecilia_formosa
ENSIPUG00000019452	npm1	99	58.824	ENSPLAG00000001093	npm1a	98	58.824	Poecilia_latipinna
ENSIPUG00000019452	npm1	99	58.882	ENSPMEG00000012523	npm1a	98	59.539	Poecilia_mexicana
ENSIPUG00000019452	npm1	99	61.258	ENSPREG00000001647	npm1a	98	61.589	Poecilia_reticulata
ENSIPUG00000019452	npm1	98	60.450	ENSPNYG00000019321	npm1a	98	60.450	Pundamilia_nyererei
ENSIPUG00000019452	npm1	99	75.085	ENSPNAG00000026891	npm1a	99	76.792	Pygocentrus_nattereri
ENSIPUG00000019452	npm1	99	62.162	ENSSFOG00015007074	npm1a	97	61.824	Scleropages_formosus
ENSIPUG00000019452	npm1	99	63.300	ENSSMAG00000019090	npm1a	98	63.973	Scophthalmus_maximus
ENSIPUG00000019452	npm1	99	60.201	ENSSDUG00000015609	npm1a	98	60.201	Seriola_dumerili
ENSIPUG00000019452	npm1	99	60.403	ENSSLDG00000017849	npm1a	98	60.870	Seriola_lalandi_dorsalis
ENSIPUG00000019452	npm1	99	53.242	ENSSPAG00000021660	npm1a	97	53.242	Stegastes_partitus
ENSIPUG00000019452	npm1	99	61.184	ENSTRUG00000024003	npm1a	98	61.842	Takifugu_rubripes
ENSIPUG00000019452	npm1	99	59.866	ENSTNIG00000010773	npm1a	98	59.532	Tetraodon_nigroviridis
ENSIPUG00000019452	npm1	100	53.465	ENSXCOG00000005958	npm1a	99	55.442	Xiphophorus_couchianus
ENSIPUG00000019452	npm1	99	57.190	ENSXMAG00000000396	npm1a	98	57.516	Xiphophorus_maculatus