EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000019544 (Gene tree)
Gene ID: -
Gene Symbol: PRDM12 (1 of many)
Alias: PFM9
Full Name: PR/SET domain 12
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 5355 bases
Position: chr28:15796039-15801393
Accession: 108259800
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000028893	zf-C2H2	PF00096.26	1.9e-12	1	2
ENSIPUP00000028893	zf-C2H2	PF00096.26	1.9e-12	2	2
ENSIPUP00000028893	zf-met	PF12874.7	1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000030071	PRDM12 (1 of many)-201	1062	XM_017459516	ENSIPUP00000028893	353 (aa)	XP_017315005	-

Gene Model

Click here to download ENSIPUG00000019544's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000019544's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000019544	PRDM12	68	45.000	ENSIPUG00000023513	-	71	44.000
ENSIPUG00000019544	PRDM12	70	44.000	ENSIPUG00000017575	-	84	44.000
ENSIPUG00000019544	PRDM12	69	43.590	ENSIPUG00000003011	-	81	43.590
ENSIPUG00000019544	PRDM12	70	43.103	ENSIPUG00000001248	prdm5	96	42.105
ENSIPUG00000019544	PRDM12	100	80.163	ENSIPUG00000017053	prdm12b	100	80.163

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000019544	PRDM12	90	82.012	ENSG00000130711	PRDM12	99	75.135	Homo_sapiens
ENSIPUG00000019544	PRDM12	100	64.305	ENSAPOG00000018234	-	100	64.305	Acanthochromis_polyacanthus
ENSIPUG00000019544	PRDM12	100	77.083	ENSAPOG00000016051	prdm12b	100	76.823	Acanthochromis_polyacanthus
ENSIPUG00000019544	PRDM12	90	80.428	ENSAMEG00000016234	PRDM12	99	80.303	Ailuropoda_melanoleuca
ENSIPUG00000019544	PRDM12	100	77.807	ENSACIG00000019578	prdm12b	100	77.807	Amphilophus_citrinellus
ENSIPUG00000019544	PRDM12	100	74.346	ENSACIG00000005193	-	100	74.346	Amphilophus_citrinellus
ENSIPUG00000019544	PRDM12	100	77.719	ENSAOCG00000015040	prdm12b	100	77.719	Amphiprion_ocellaris
ENSIPUG00000019544	PRDM12	100	70.466	ENSAPEG00000022849	-	99	70.466	Amphiprion_percula
ENSIPUG00000019544	PRDM12	100	78.342	ENSAPEG00000015092	prdm12b	100	78.342	Amphiprion_percula
ENSIPUG00000019544	PRDM12	100	74.541	ENSATEG00000014595	-	96	81.651	Anabas_testudineus
ENSIPUG00000019544	PRDM12	94	79.009	ENSANAG00000020616	PRDM12	99	79.009	Aotus_nancymaae
ENSIPUG00000019544	PRDM12	100	72.843	ENSACLG00000007631	-	100	72.843	Astatotilapia_calliptera
ENSIPUG00000019544	PRDM12	100	78.962	ENSACLG00000011876	prdm12b	100	78.962	Astatotilapia_calliptera
ENSIPUG00000019544	PRDM12	100	81.044	ENSAMXG00000008540	PRDM12	100	81.044	Astyanax_mexicanus
ENSIPUG00000019544	PRDM12	100	78.649	ENSAMXG00000033665	prdm12b	100	78.649	Astyanax_mexicanus
ENSIPUG00000019544	PRDM12	90	82.012	ENSBTAG00000023797	PRDM12	99	76.099	Bos_taurus
ENSIPUG00000019544	PRDM12	90	82.012	ENSCJAG00000020540	PRDM12	99	76.164	Callithrix_jacchus
ENSIPUG00000019544	PRDM12	76	87.037	ENSCAFG00000023076	PRDM12	95	78.964	Canis_familiaris
ENSIPUG00000019544	PRDM12	90	82.317	ENSCAFG00020024046	PRDM12	99	76.022	Canis_lupus_dingo
ENSIPUG00000019544	PRDM12	90	82.317	ENSCHIG00000025005	PRDM12	99	76.438	Capra_hircus
ENSIPUG00000019544	PRDM12	93	77.059	ENSCPOG00000005901	PRDM12	99	77.059	Cavia_porcellus
ENSIPUG00000019544	PRDM12	90	82.012	ENSCCAG00000037485	PRDM12	99	75.956	Cebus_capucinus
ENSIPUG00000019544	PRDM12	90	82.012	ENSCATG00000020327	PRDM12	99	75.956	Cercocebus_atys
ENSIPUG00000019544	PRDM12	90	82.317	ENSCLAG00000005499	PRDM12	89	82.317	Chinchilla_lanigera
ENSIPUG00000019544	PRDM12	90	82.012	ENSCSAG00000014756	PRDM12	99	75.749	Chlorocebus_sabaeus
ENSIPUG00000019544	PRDM12	100	77.198	ENSCPBG00000022628	PRDM12	99	77.198	Chrysemys_picta_bellii
ENSIPUG00000019544	PRDM12	90	82.012	ENSCGRG00001015005	Prdm12	99	75.881	Cricetulus_griseus_chok1gshd
ENSIPUG00000019544	PRDM12	100	71.867	ENSCVAG00000000944	-	100	71.867	Cyprinodon_variegatus
ENSIPUG00000019544	PRDM12	100	78.976	ENSCVAG00000017166	prdm12b	100	79.515	Cyprinodon_variegatus
ENSIPUG00000019544	PRDM12	100	80.654	ENSDARG00000007430	prdm12b	100	80.654	Danio_rerio
ENSIPUG00000019544	PRDM12	90	81.459	ENSDNOG00000042302	PRDM12	99	75.890	Dasypus_novemcinctus
ENSIPUG00000019544	PRDM12	85	66.667	ENSEBUG00000016780	prdm12b	74	68.182	Eptatretus_burgeri
ENSIPUG00000019544	PRDM12	94	79.300	ENSEASG00005008472	PRDM12	99	76.164	Equus_asinus_asinus
ENSIPUG00000019544	PRDM12	94	79.300	ENSECAG00000005933	PRDM12	99	76.164	Equus_caballus
ENSIPUG00000019544	PRDM12	100	77.808	ENSELUG00000013674	PRDM12	100	76.923	Esox_lucius
ENSIPUG00000019544	PRDM12	100	79.459	ENSELUG00000009905	prdm12b	100	79.459	Esox_lucius
ENSIPUG00000019544	PRDM12	90	82.317	ENSFCAG00000043086	PRDM12	99	76.230	Felis_catus
ENSIPUG00000019544	PRDM12	100	79.224	ENSFALG00000001445	PRDM12	89	78.393	Ficedula_albicollis
ENSIPUG00000019544	PRDM12	100	72.564	ENSFHEG00000007746	-	100	72.821	Fundulus_heteroclitus
ENSIPUG00000019544	PRDM12	100	78.877	ENSFHEG00000003944	prdm12b	100	78.877	Fundulus_heteroclitus
ENSIPUG00000019544	PRDM12	100	78.763	ENSGMOG00000011797	prdm12b	100	78.763	Gadus_morhua
ENSIPUG00000019544	PRDM12	100	79.224	ENSGALG00000003895	PRDM12	99	79.224	Gallus_gallus
ENSIPUG00000019544	PRDM12	100	77.926	ENSGAFG00000010827	prdm12b	99	77.926	Gambusia_affinis
ENSIPUG00000019544	PRDM12	100	80.270	ENSGACG00000016713	prdm12b	99	80.270	Gasterosteus_aculeatus
ENSIPUG00000019544	PRDM12	100	77.198	ENSGAGG00000014083	PRDM12	99	77.198	Gopherus_agassizii
ENSIPUG00000019544	PRDM12	90	81.707	ENSGGOG00000010568	PRDM12	99	75.610	Gorilla_gorilla
ENSIPUG00000019544	PRDM12	100	77.688	ENSHBUG00000022878	prdm12b	100	78.495	Haplochromis_burtoni
ENSIPUG00000019544	PRDM12	100	72.843	ENSHBUG00000022537	-	93	72.843	Haplochromis_burtoni
ENSIPUG00000019544	PRDM12	90	82.012	ENSHGLG00000013939	PRDM12	99	75.272	Heterocephalus_glaber_female
ENSIPUG00000019544	PRDM12	100	70.889	ENSHCOG00000021167	-	100	70.889	Hippocampus_comes
ENSIPUG00000019544	PRDM12	90	79.532	ENSHCOG00000003663	prdm12b	100	73.980	Hippocampus_comes
ENSIPUG00000019544	PRDM12	97	77.222	ENSSTOG00000005986	PRDM12	93	77.222	Ictidomys_tridecemlineatus
ENSIPUG00000019544	PRDM12	90	82.622	ENSJJAG00000005424	Prdm12	98	82.622	Jaculus_jaculus
ENSIPUG00000019544	PRDM12	94	78.736	ENSKMAG00000021205	-	94	78.571	Kryptolebias_marmoratus
ENSIPUG00000019544	PRDM12	100	71.535	ENSKMAG00000016921	prdm12b	100	73.020	Kryptolebias_marmoratus
ENSIPUG00000019544	PRDM12	100	75.263	ENSLBEG00000007776	-	100	75.789	Labrus_bergylta
ENSIPUG00000019544	PRDM12	100	78.249	ENSLBEG00000017769	prdm12b	100	78.249	Labrus_bergylta
ENSIPUG00000019544	PRDM12	100	79.121	ENSLACG00000017560	PRDM12	99	79.121	Latimeria_chalumnae
ENSIPUG00000019544	PRDM12	100	80.000	ENSLOCG00000005429	prdm12b	99	80.874	Lepisosteus_oculatus
ENSIPUG00000019544	PRDM12	90	81.515	ENSLAFG00000006979	PRDM12	96	76.880	Loxodonta_africana
ENSIPUG00000019544	PRDM12	90	82.012	ENSMFAG00000040322	PRDM12	99	75.135	Macaca_fascicularis
ENSIPUG00000019544	PRDM12	90	82.012	ENSMNEG00000037234	PRDM12	99	75.956	Macaca_nemestrina
ENSIPUG00000019544	PRDM12	100	71.000	ENSMAMG00000018988	-	100	72.449	Mastacembelus_armatus
ENSIPUG00000019544	PRDM12	100	78.610	ENSMAMG00000013212	prdm12b	100	78.610	Mastacembelus_armatus
ENSIPUG00000019544	PRDM12	100	72.475	ENSMZEG00005000415	PRDM12	100	72.475	Maylandia_zebra
ENSIPUG00000019544	PRDM12	100	78.393	ENSMGAG00000005438	PRDM12	99	78.393	Meleagris_gallopavo
ENSIPUG00000019544	PRDM12	100	75.543	ENSMAUG00000013040	Prdm12	99	75.543	Mesocricetus_auratus
ENSIPUG00000019544	PRDM12	95	79.420	ENSMICG00000015480	PRDM12	99	76.164	Microcebus_murinus
ENSIPUG00000019544	PRDM12	99	76.923	ENSMOCG00000021026	Prdm12	93	79.300	Microtus_ochrogaster
ENSIPUG00000019544	PRDM12	100	77.198	ENSMODG00000012108	PRDM12	99	77.198	Monodelphis_domestica
ENSIPUG00000019544	PRDM12	100	71.111	ENSMALG00000021901	prdm12b	99	71.111	Monopterus_albus
ENSIPUG00000019544	PRDM12	90	82.012	MGP_CAROLIEiJ_G0023414	Prdm12	99	75.543	Mus_caroli
ENSIPUG00000019544	PRDM12	90	82.012	ENSMUSG00000079466	Prdm12	99	75.543	Mus_musculus
ENSIPUG00000019544	PRDM12	90	82.012	MGP_PahariEiJ_G0024871	Prdm12	99	75.543	Mus_pahari
ENSIPUG00000019544	PRDM12	90	82.012	MGP_SPRETEiJ_G0024331	Prdm12	99	75.543	Mus_spretus
ENSIPUG00000019544	PRDM12	90	82.012	ENSNGAG00000018480	Prdm12	99	76.648	Nannospalax_galili
ENSIPUG00000019544	PRDM12	100	77.067	ENSNBRG00000006727	prdm12b	100	77.867	Neolamprologus_brichardi
ENSIPUG00000019544	PRDM12	100	72.727	ENSNBRG00000024312	-	100	72.727	Neolamprologus_brichardi
ENSIPUG00000019544	PRDM12	100	68.956	ENSMEUG00000003828	PRDM12	99	68.956	Notamacropus_eugenii
ENSIPUG00000019544	PRDM12	90	82.317	ENSOPRG00000008680	PRDM12	98	82.317	Ochotona_princeps
ENSIPUG00000019544	PRDM12	94	79.300	ENSODEG00000016282	PRDM12	64	79.300	Octodon_degus
ENSIPUG00000019544	PRDM12	65	77.632	ENSOANG00000001043	PRDM12	100	77.632	Ornithorhynchus_anatinus
ENSIPUG00000019544	PRDM12	87	79.874	ENSOCUG00000008241	PRDM12	100	79.874	Oryctolagus_cuniculus
ENSIPUG00000019544	PRDM12	100	72.051	ENSORLG00000017558	-	100	72.051	Oryzias_latipes
ENSIPUG00000019544	PRDM12	100	76.984	ENSORLG00000007114	prdm12b	99	76.984	Oryzias_latipes
ENSIPUG00000019544	PRDM12	100	76.842	ENSORLG00020019565	prdm12b	99	77.105	Oryzias_latipes_hni
ENSIPUG00000019544	PRDM12	100	71.611	ENSORLG00020013167	-	100	72.379	Oryzias_latipes_hni
ENSIPUG00000019544	PRDM12	100	76.984	ENSORLG00015007621	prdm12b	99	77.249	Oryzias_latipes_hsok
ENSIPUG00000019544	PRDM12	100	72.051	ENSORLG00015003435	-	100	72.051	Oryzias_latipes_hsok
ENSIPUG00000019544	PRDM12	100	76.702	ENSOMEG00000004134	prdm12b	99	77.225	Oryzias_melastigma
ENSIPUG00000019544	PRDM12	100	73.575	ENSOMEG00000007762	-	100	73.575	Oryzias_melastigma
ENSIPUG00000019544	PRDM12	90	82.317	ENSOGAG00000007557	PRDM12	97	82.317	Otolemur_garnettii
ENSIPUG00000019544	PRDM12	81	78.041	ENSPPAG00000031506	-	99	78.041	Pan_paniscus
ENSIPUG00000019544	PRDM12	98	71.111	ENSPPRG00000023024	PRDM12	91	71.111	Panthera_pardus
ENSIPUG00000019544	PRDM12	90	82.012	ENSPTRG00000043324	-	99	75.881	Pan_troglodytes
ENSIPUG00000019544	PRDM12	90	82.012	ENSPTRG00000021475	PRDM12	99	75.881	Pan_troglodytes
ENSIPUG00000019544	PRDM12	90	82.012	ENSPANG00000025967	PRDM12	99	75.956	Papio_anubis
ENSIPUG00000019544	PRDM12	90	80.793	ENSPKIG00000004305	PRDM12	94	80.793	Paramormyrops_kingsleyae
ENSIPUG00000019544	PRDM12	100	78.495	ENSPKIG00000007228	prdm12b	100	78.820	Paramormyrops_kingsleyae
ENSIPUG00000019544	PRDM12	100	77.198	ENSPSIG00000006739	PRDM12	99	77.198	Pelodiscus_sinensis
ENSIPUG00000019544	PRDM12	100	73.127	ENSPMGG00000002356	-	100	73.127	Periophthalmus_magnuspinnatus
ENSIPUG00000019544	PRDM12	100	79.837	ENSPMGG00000008867	prdm12b	99	79.837	Periophthalmus_magnuspinnatus
ENSIPUG00000019544	PRDM12	90	82.012	ENSPEMG00000009969	Prdm12	89	82.012	Peromyscus_maniculatus_bairdii
ENSIPUG00000019544	PRDM12	100	77.198	ENSPCIG00000024119	PRDM12	99	77.198	Phascolarctos_cinereus
ENSIPUG00000019544	PRDM12	100	79.839	ENSPFOG00000019841	prdm12b	100	79.839	Poecilia_formosa
ENSIPUG00000019544	PRDM12	100	77.836	ENSPLAG00000016626	prdm12b	99	77.836	Poecilia_latipinna
ENSIPUG00000019544	PRDM12	96	78.082	ENSPMEG00000016698	prdm12b	99	78.082	Poecilia_mexicana
ENSIPUG00000019544	PRDM12	98	72.358	ENSPREG00000003211	-	97	72.358	Poecilia_reticulata
ENSIPUG00000019544	PRDM12	100	77.632	ENSPREG00000015073	prdm12b	99	77.632	Poecilia_reticulata
ENSIPUG00000019544	PRDM12	90	82.012	ENSPPYG00000019694	PRDM12	92	82.012	Pongo_abelii
ENSIPUG00000019544	PRDM12	90	82.317	ENSPCOG00000022255	PRDM12	99	75.881	Propithecus_coquereli
ENSIPUG00000019544	PRDM12	90	82.317	ENSPVAG00000001511	PRDM12	99	75.610	Pteropus_vampyrus
ENSIPUG00000019544	PRDM12	100	72.475	ENSPNYG00000013589	-	100	72.475	Pundamilia_nyererei
ENSIPUG00000019544	PRDM12	100	77.005	ENSPNYG00000009607	prdm12b	100	77.807	Pundamilia_nyererei
ENSIPUG00000019544	PRDM12	100	79.675	ENSPNAG00000024532	prdm12b	100	79.675	Pygocentrus_nattereri
ENSIPUG00000019544	PRDM12	100	79.310	ENSPNAG00000013396	PRDM12	100	79.310	Pygocentrus_nattereri
ENSIPUG00000019544	PRDM12	90	82.012	ENSRNOG00000009218	Prdm12	99	75.543	Rattus_norvegicus
ENSIPUG00000019544	PRDM12	88	81.562	ENSRBIG00000042712	PRDM12	98	75.900	Rhinopithecus_bieti
ENSIPUG00000019544	PRDM12	89	81.790	ENSRROG00000043554	PRDM12	99	81.790	Rhinopithecus_roxellana
ENSIPUG00000019544	PRDM12	100	76.438	ENSSHAG00000015972	PRDM12	99	76.438	Sarcophilus_harrisii
ENSIPUG00000019544	PRDM12	100	74.293	ENSSMAG00000003754	prdm12b	100	75.321	Scophthalmus_maximus
ENSIPUG00000019544	PRDM12	100	76.378	ENSSDUG00000023498	prdm12b	100	76.378	Seriola_dumerili
ENSIPUG00000019544	PRDM12	100	75.733	ENSSDUG00000019071	-	100	75.733	Seriola_dumerili
ENSIPUG00000019544	PRDM12	100	77.747	ENSSLDG00000013562	-	100	77.747	Seriola_lalandi_dorsalis
ENSIPUG00000019544	PRDM12	100	76.903	ENSSLDG00000009557	prdm12b	100	77.428	Seriola_lalandi_dorsalis
ENSIPUG00000019544	PRDM12	100	78.297	ENSSPUG00000013424	PRDM12	99	78.297	Sphenodon_punctatus
ENSIPUG00000019544	PRDM12	100	69.648	ENSSPAG00000022420	-	100	70.190	Stegastes_partitus
ENSIPUG00000019544	PRDM12	100	76.720	ENSSPAG00000018824	prdm12b	100	77.778	Stegastes_partitus
ENSIPUG00000019544	PRDM12	90	82.317	ENSSSCG00000005703	PRDM12	99	76.022	Sus_scrofa
ENSIPUG00000019544	PRDM12	100	75.815	ENSTRUG00000013239	-	100	75.815	Takifugu_rubripes
ENSIPUG00000019544	PRDM12	100	79.891	ENSTRUG00000018659	prdm12b	100	80.707	Takifugu_rubripes
ENSIPUG00000019544	PRDM12	100	78.533	ENSTNIG00000009020	prdm12b	99	79.620	Tetraodon_nigroviridis
ENSIPUG00000019544	PRDM12	100	73.442	ENSTNIG00000005859	-	99	73.442	Tetraodon_nigroviridis
ENSIPUG00000019544	PRDM12	90	82.317	ENSUAMG00000009653	PRDM12	94	79.592	Ursus_americanus
ENSIPUG00000019544	PRDM12	90	82.317	ENSVVUG00000027662	PRDM12	77	82.317	Vulpes_vulpes
ENSIPUG00000019544	PRDM12	100	78.610	ENSXCOG00000002836	prdm12b	99	78.610	Xiphophorus_couchianus
ENSIPUG00000019544	PRDM12	100	78.400	ENSXMAG00000005537	prdm12b	100	78.400	Xiphophorus_maculatus
ENSIPUG00000019544	PRDM12	100	71.576	ENSXMAG00000028012	-	100	71.576	Xiphophorus_maculatus