EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000019831 (Gene tree)
Gene ID: 108278618
Gene Symbol: cnot6a
Alias: cnot6|wu:fa03c11|wu:fc17f01|zgc:65822
Full Name: CCR4-NOT transcription complex subunit 6
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 12954 bases
Position: chr18:10935678-10948631
Accession: 108278618
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000029357	Exo_endo_phos	PF03372.23	1.5e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000030544	-	5391	XM_017492072	ENSIPUP00000029357	556 (aa)	XP_017347561	A0A2D0SYF4

Gene Model

Click here to download ENSIPUG00000019831's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000019831's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000019831	cnot6a	100	87.276	ENSIPUG00000017482	cnot6b	100	87.276
ENSIPUG00000019831	cnot6a	99	75.045	ENSIPUG00000009879	cnot6l	99	75.045

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000019831	cnot6a	100	85.484	ENSG00000113300	CNOT6	100	92.105	Homo_sapiens
ENSIPUG00000019831	cnot6a	100	90.340	ENSAPOG00000009994	cnot6b	100	90.340	Acanthochromis_polyacanthus
ENSIPUG00000019831	cnot6a	100	85.536	ENSAMEG00000000949	CNOT6	99	85.536	Ailuropoda_melanoleuca
ENSIPUG00000019831	cnot6a	100	89.427	ENSACIG00000016566	cnot6b	100	89.427	Amphilophus_citrinellus
ENSIPUG00000019831	cnot6a	100	90.340	ENSAOCG00000006893	cnot6b	100	90.340	Amphiprion_ocellaris
ENSIPUG00000019831	cnot6a	100	90.340	ENSAPEG00000016949	cnot6b	100	90.340	Amphiprion_percula
ENSIPUG00000019831	cnot6a	100	88.193	ENSATEG00000007862	cnot6b	100	88.193	Anabas_testudineus
ENSIPUG00000019831	cnot6a	100	86.738	ENSAPLG00000012715	CNOT6	99	86.738	Anas_platyrhynchos
ENSIPUG00000019831	cnot6a	100	85.663	ENSACAG00000016548	CNOT6	100	85.663	Anolis_carolinensis
ENSIPUG00000019831	cnot6a	100	85.484	ENSANAG00000030436	CNOT6	96	85.484	Aotus_nancymaae
ENSIPUG00000019831	cnot6a	100	89.267	ENSACLG00000008279	cnot6b	100	89.267	Astatotilapia_calliptera
ENSIPUG00000019831	cnot6a	100	88.889	ENSAMXG00000034694	cnot6b	100	88.889	Astyanax_mexicanus
ENSIPUG00000019831	cnot6a	100	95.512	ENSAMXG00000019140	cnot6a	100	95.512	Astyanax_mexicanus
ENSIPUG00000019831	cnot6a	100	85.663	ENSBTAG00000017362	CNOT6	100	85.663	Bos_taurus
ENSIPUG00000019831	cnot6a	100	85.663	ENSCJAG00000009795	CNOT6	100	85.663	Callithrix_jacchus
ENSIPUG00000019831	cnot6a	100	85.842	ENSCAFG00000000464	CNOT6	100	85.842	Canis_familiaris
ENSIPUG00000019831	cnot6a	100	85.842	ENSCAFG00020002441	CNOT6	100	85.842	Canis_lupus_dingo
ENSIPUG00000019831	cnot6a	100	85.484	ENSCHIG00000019100	CNOT6	100	85.484	Capra_hircus
ENSIPUG00000019831	cnot6a	100	84.409	ENSTSYG00000003982	CNOT6	100	84.409	Carlito_syrichta
ENSIPUG00000019831	cnot6a	100	80.824	ENSCPOG00000035657	CNOT6	100	80.824	Cavia_porcellus
ENSIPUG00000019831	cnot6a	100	81.004	ENSCCAG00000033670	CNOT6	100	81.004	Cebus_capucinus
ENSIPUG00000019831	cnot6a	100	85.484	ENSCATG00000042014	CNOT6	100	85.484	Cercocebus_atys
ENSIPUG00000019831	cnot6a	100	84.409	ENSCLAG00000010489	CNOT6	100	84.409	Chinchilla_lanigera
ENSIPUG00000019831	cnot6a	100	85.484	ENSCSAG00000008165	CNOT6	100	85.484	Chlorocebus_sabaeus
ENSIPUG00000019831	cnot6a	100	84.946	ENSCHOG00000009680	CNOT6	100	84.946	Choloepus_hoffmanni
ENSIPUG00000019831	cnot6a	100	86.738	ENSCPBG00000008908	CNOT6	100	86.738	Chrysemys_picta_bellii
ENSIPUG00000019831	cnot6a	100	85.663	ENSCANG00000026756	CNOT6	100	85.663	Colobus_angolensis_palliatus
ENSIPUG00000019831	cnot6a	100	84.381	ENSCGRG00001011452	Cnot6	100	84.381	Cricetulus_griseus_chok1gshd
ENSIPUG00000019831	cnot6a	100	82.079	ENSCGRG00000010407	Cnot6	100	82.079	Cricetulus_griseus_crigri
ENSIPUG00000019831	cnot6a	100	89.803	ENSCSEG00000010939	cnot6b	100	89.803	Cynoglossus_semilaevis
ENSIPUG00000019831	cnot6a	100	88.551	ENSCVAG00000010538	cnot6b	100	88.551	Cyprinodon_variegatus
ENSIPUG00000019831	cnot6a	100	85.663	ENSDARG00000101072	cnot6b	100	85.663	Danio_rerio
ENSIPUG00000019831	cnot6a	100	91.741	ENSDARG00000008255	cnot6a	100	91.741	Danio_rerio
ENSIPUG00000019831	cnot6a	100	86.022	ENSDNOG00000041644	CNOT6	100	86.022	Dasypus_novemcinctus
ENSIPUG00000019831	cnot6a	100	77.061	ENSDORG00000001708	Cnot6	100	77.061	Dipodomys_ordii
ENSIPUG00000019831	cnot6a	100	68.336	ENSETEG00000006975	CNOT6	100	68.336	Echinops_telfairi
ENSIPUG00000019831	cnot6a	100	85.484	ENSEASG00005012794	-	100	85.484	Equus_asinus_asinus
ENSIPUG00000019831	cnot6a	90	81.400	ENSEASG00005012957	-	99	81.400	Equus_asinus_asinus
ENSIPUG00000019831	cnot6a	100	80.790	ENSECAG00000012704	-	99	80.790	Equus_caballus
ENSIPUG00000019831	cnot6a	100	86.022	ENSECAG00000019325	CNOT6	100	86.022	Equus_caballus
ENSIPUG00000019831	cnot6a	100	84.588	ENSEEUG00000015382	CNOT6	100	84.588	Erinaceus_europaeus
ENSIPUG00000019831	cnot6a	100	86.772	ENSELUG00000015981	cnot6b	99	86.772	Esox_lucius
ENSIPUG00000019831	cnot6a	100	88.510	ENSELUG00000024580	cnot6a	100	88.510	Esox_lucius
ENSIPUG00000019831	cnot6a	100	85.842	ENSFCAG00000001881	CNOT6	100	85.842	Felis_catus
ENSIPUG00000019831	cnot6a	100	86.918	ENSFALG00000007699	CNOT6	100	86.918	Ficedula_albicollis
ENSIPUG00000019831	cnot6a	100	84.050	ENSFDAG00000001999	CNOT6	100	84.050	Fukomys_damarensis
ENSIPUG00000019831	cnot6a	65	90.476	ENSFHEG00000013756	cnot6b	96	90.476	Fundulus_heteroclitus
ENSIPUG00000019831	cnot6a	95	90.548	ENSGMOG00000009767	cnot6b	99	90.548	Gadus_morhua
ENSIPUG00000019831	cnot6a	100	86.738	ENSGALG00000034316	CNOT6	100	86.738	Gallus_gallus
ENSIPUG00000019831	cnot6a	100	88.551	ENSGAFG00000008525	cnot6b	100	88.551	Gambusia_affinis
ENSIPUG00000019831	cnot6a	95	88.091	ENSGACG00000018046	cnot6b	99	88.091	Gasterosteus_aculeatus
ENSIPUG00000019831	cnot6a	100	71.556	ENSGAGG00000012176	CNOT6	100	71.556	Gopherus_agassizii
ENSIPUG00000019831	cnot6a	100	85.484	ENSGGOG00000003675	CNOT6	100	85.484	Gorilla_gorilla
ENSIPUG00000019831	cnot6a	100	89.445	ENSHBUG00000002819	cnot6b	100	89.445	Haplochromis_burtoni
ENSIPUG00000019831	cnot6a	100	84.229	ENSHGLG00000017756	CNOT6	100	84.229	Heterocephalus_glaber_female
ENSIPUG00000019831	cnot6a	100	84.229	ENSHGLG00100005747	CNOT6	100	84.229	Heterocephalus_glaber_male
ENSIPUG00000019831	cnot6a	100	89.048	ENSHCOG00000016176	cnot6b	100	89.048	Hippocampus_comes
ENSIPUG00000019831	cnot6a	100	85.484	ENSSTOG00000002803	CNOT6	100	85.484	Ictidomys_tridecemlineatus
ENSIPUG00000019831	cnot6a	100	84.409	ENSJJAG00000012296	Cnot6	100	84.409	Jaculus_jaculus
ENSIPUG00000019831	cnot6a	100	88.551	ENSKMAG00000004640	cnot6b	100	88.551	Kryptolebias_marmoratus
ENSIPUG00000019831	cnot6a	100	89.088	ENSLBEG00000027917	cnot6b	100	89.088	Labrus_bergylta
ENSIPUG00000019831	cnot6a	100	91.219	ENSLOCG00000010102	cnot6b	99	91.219	Lepisosteus_oculatus
ENSIPUG00000019831	cnot6a	100	86.380	ENSLAFG00000016742	CNOT6	100	86.380	Loxodonta_africana
ENSIPUG00000019831	cnot6a	100	85.484	ENSMFAG00000030867	CNOT6	100	85.484	Macaca_fascicularis
ENSIPUG00000019831	cnot6a	100	85.484	ENSMMUG00000018690	CNOT6	100	85.484	Macaca_mulatta
ENSIPUG00000019831	cnot6a	100	85.484	ENSMNEG00000038565	CNOT6	100	85.484	Macaca_nemestrina
ENSIPUG00000019831	cnot6a	100	85.484	ENSMLEG00000010555	CNOT6	100	85.484	Mandrillus_leucophaeus
ENSIPUG00000019831	cnot6a	100	90.519	ENSMAMG00000007515	cnot6b	100	90.519	Mastacembelus_armatus
ENSIPUG00000019831	cnot6a	100	89.267	ENSMZEG00005012899	cnot6b	100	89.267	Maylandia_zebra
ENSIPUG00000019831	cnot6a	100	84.767	ENSMAUG00000019798	Cnot6	100	84.767	Mesocricetus_auratus
ENSIPUG00000019831	cnot6a	100	83.871	ENSMICG00000013018	-	100	83.871	Microcebus_murinus
ENSIPUG00000019831	cnot6a	98	77.615	ENSMICG00000028378	-	99	77.615	Microcebus_murinus
ENSIPUG00000019831	cnot6a	100	84.767	ENSMOCG00000021662	Cnot6	100	84.767	Microtus_ochrogaster
ENSIPUG00000019831	cnot6a	100	88.309	ENSMMOG00000003227	cnot6b	100	88.309	Mola_mola
ENSIPUG00000019831	cnot6a	100	86.201	ENSMODG00000003979	CNOT6	100	86.201	Monodelphis_domestica
ENSIPUG00000019831	cnot6a	100	90.519	ENSMALG00000014251	cnot6b	100	90.519	Monopterus_albus
ENSIPUG00000019831	cnot6a	100	84.946	MGP_CAROLIEiJ_G0016277	Cnot6	100	84.946	Mus_caroli
ENSIPUG00000019831	cnot6a	100	84.946	ENSMUSG00000020362	Cnot6	100	84.946	Mus_musculus
ENSIPUG00000019831	cnot6a	100	84.946	MGP_PahariEiJ_G0017413	Cnot6	100	84.946	Mus_pahari
ENSIPUG00000019831	cnot6a	100	84.946	MGP_SPRETEiJ_G0017122	Cnot6	100	84.946	Mus_spretus
ENSIPUG00000019831	cnot6a	100	85.842	ENSMPUG00000000587	CNOT6	96	85.842	Mustela_putorius_furo
ENSIPUG00000019831	cnot6a	100	84.014	ENSMLUG00000010257	CNOT6	100	84.014	Myotis_lucifugus
ENSIPUG00000019831	cnot6a	100	84.229	ENSNGAG00000008269	Cnot6	100	84.229	Nannospalax_galili
ENSIPUG00000019831	cnot6a	100	89.445	ENSNBRG00000010798	cnot6b	100	89.445	Neolamprologus_brichardi
ENSIPUG00000019831	cnot6a	100	84.740	ENSNLEG00000002322	CNOT6	100	84.740	Nomascus_leucogenys
ENSIPUG00000019831	cnot6a	81	80.930	ENSMEUG00000000025	CNOT6	81	80.930	Notamacropus_eugenii
ENSIPUG00000019831	cnot6a	88	86.905	ENSOPRG00000008244	-	88	86.905	Ochotona_princeps
ENSIPUG00000019831	cnot6a	100	84.050	ENSODEG00000007041	CNOT6	100	84.050	Octodon_degus
ENSIPUG00000019831	cnot6a	75	90.544	ENSONIG00000013027	cnot6b	99	90.544	Oreochromis_niloticus
ENSIPUG00000019831	cnot6a	100	85.484	ENSOANG00000010226	CNOT6	100	85.484	Ornithorhynchus_anatinus
ENSIPUG00000019831	cnot6a	100	84.464	ENSOCUG00000011083	CNOT6	100	84.464	Oryctolagus_cuniculus
ENSIPUG00000019831	cnot6a	100	89.445	ENSORLG00000005059	cnot6b	100	89.445	Oryzias_latipes
ENSIPUG00000019831	cnot6a	100	89.445	ENSORLG00020012784	cnot6b	100	89.445	Oryzias_latipes_hni
ENSIPUG00000019831	cnot6a	94	88.719	ENSORLG00015022658	cnot6b	98	88.719	Oryzias_latipes_hsok
ENSIPUG00000019831	cnot6a	100	89.982	ENSOMEG00000005295	cnot6b	100	89.982	Oryzias_melastigma
ENSIPUG00000019831	cnot6a	94	84.762	ENSOGAG00000032470	CNOT6	100	84.762	Otolemur_garnettii
ENSIPUG00000019831	cnot6a	97	84.899	ENSOARG00000001003	CNOT6	100	84.899	Ovis_aries
ENSIPUG00000019831	cnot6a	100	85.484	ENSPPAG00000032253	CNOT6	100	85.484	Pan_paniscus
ENSIPUG00000019831	cnot6a	100	86.225	ENSPPRG00000011912	CNOT6	100	86.225	Panthera_pardus
ENSIPUG00000019831	cnot6a	100	86.225	ENSPTIG00000016794	CNOT6	100	86.225	Panthera_tigris_altaica
ENSIPUG00000019831	cnot6a	100	85.484	ENSPTRG00000017636	CNOT6	100	85.484	Pan_troglodytes
ENSIPUG00000019831	cnot6a	100	85.484	ENSPANG00000016191	CNOT6	100	85.484	Papio_anubis
ENSIPUG00000019831	cnot6a	100	89.247	ENSPKIG00000021368	cnot6b	100	89.247	Paramormyrops_kingsleyae
ENSIPUG00000019831	cnot6a	98	86.789	ENSPSIG00000017307	CNOT6	100	86.789	Pelodiscus_sinensis
ENSIPUG00000019831	cnot6a	100	89.785	ENSPMGG00000011238	cnot6b	100	89.785	Periophthalmus_magnuspinnatus
ENSIPUG00000019831	cnot6a	100	84.050	ENSPEMG00000000627	Cnot6	100	84.050	Peromyscus_maniculatus_bairdii
ENSIPUG00000019831	cnot6a	100	86.201	ENSPCIG00000020319	CNOT6	99	86.201	Phascolarctos_cinereus
ENSIPUG00000019831	cnot6a	100	88.909	ENSPFOG00000006291	cnot6b	100	88.909	Poecilia_formosa
ENSIPUG00000019831	cnot6a	100	85.842	ENSPLAG00000008266	cnot6b	100	85.842	Poecilia_latipinna
ENSIPUG00000019831	cnot6a	100	89.088	ENSPMEG00000009091	cnot6b	100	89.088	Poecilia_mexicana
ENSIPUG00000019831	cnot6a	100	88.351	ENSPREG00000003713	cnot6b	100	88.351	Poecilia_reticulata
ENSIPUG00000019831	cnot6a	100	85.484	ENSPPYG00000016137	CNOT6	100	85.484	Pongo_abelii
ENSIPUG00000019831	cnot6a	71	82.022	ENSPCAG00000005599	-	71	82.022	Procavia_capensis
ENSIPUG00000019831	cnot6a	100	79.928	ENSPCOG00000017359	CNOT6	100	80.645	Propithecus_coquereli
ENSIPUG00000019831	cnot6a	100	81.720	ENSPVAG00000003069	CNOT6	100	81.720	Pteropus_vampyrus
ENSIPUG00000019831	cnot6a	100	89.088	ENSPNYG00000000321	cnot6b	100	89.088	Pundamilia_nyererei
ENSIPUG00000019831	cnot6a	100	95.691	ENSPNAG00000029586	cnot6a	100	95.691	Pygocentrus_nattereri
ENSIPUG00000019831	cnot6a	100	88.889	ENSPNAG00000028816	cnot6b	100	88.889	Pygocentrus_nattereri
ENSIPUG00000019831	cnot6a	100	84.050	ENSRNOG00000054891	Cnot6	100	84.050	Rattus_norvegicus
ENSIPUG00000019831	cnot6a	100	85.484	ENSRBIG00000004309	CNOT6	100	85.484	Rhinopithecus_bieti
ENSIPUG00000019831	cnot6a	100	85.484	ENSRROG00000035378	CNOT6	100	85.484	Rhinopithecus_roxellana
ENSIPUG00000019831	cnot6a	100	85.484	ENSSBOG00000030494	CNOT6	100	85.484	Saimiri_boliviensis_boliviensis
ENSIPUG00000019831	cnot6a	100	86.201	ENSSHAG00000017436	CNOT6	100	86.201	Sarcophilus_harrisii
ENSIPUG00000019831	cnot6a	100	91.219	ENSSFOG00015022383	cnot6a	96	91.219	Scleropages_formosus
ENSIPUG00000019831	cnot6a	100	90.681	ENSSFOG00015015133	CNOT6	100	90.681	Scleropages_formosus
ENSIPUG00000019831	cnot6a	100	88.909	ENSSMAG00000003084	cnot6b	100	88.909	Scophthalmus_maximus
ENSIPUG00000019831	cnot6a	100	90.340	ENSSDUG00000004151	cnot6b	100	90.340	Seriola_dumerili
ENSIPUG00000019831	cnot6a	100	90.340	ENSSLDG00000004448	cnot6b	100	90.340	Seriola_lalandi_dorsalis
ENSIPUG00000019831	cnot6a	64	68.245	ENSSARG00000012650	-	100	68.245	Sorex_araneus
ENSIPUG00000019831	cnot6a	100	86.559	ENSSPUG00000007893	CNOT6	100	86.559	Sphenodon_punctatus
ENSIPUG00000019831	cnot6a	100	90.519	ENSSPAG00000000149	cnot6b	100	90.519	Stegastes_partitus
ENSIPUG00000019831	cnot6a	100	85.663	ENSSSCG00000014009	CNOT6	100	85.663	Sus_scrofa
ENSIPUG00000019831	cnot6a	100	86.355	ENSTGUG00000001119	CNOT6	100	86.355	Taeniopygia_guttata
ENSIPUG00000019831	cnot6a	100	87.276	ENSTRUG00000002818	cnot6b	100	87.276	Takifugu_rubripes
ENSIPUG00000019831	cnot6a	100	87.814	ENSTNIG00000004443	cnot6b	99	87.814	Tetraodon_nigroviridis
ENSIPUG00000019831	cnot6a	66	88.281	ENSTBEG00000017094	-	75	88.281	Tupaia_belangeri
ENSIPUG00000019831	cnot6a	100	85.484	ENSTTRG00000009363	CNOT6	100	85.484	Tursiops_truncatus
ENSIPUG00000019831	cnot6a	77	83.721	ENSUAMG00000004579	CNOT6	99	74.950	Ursus_americanus
ENSIPUG00000019831	cnot6a	100	81.709	ENSUMAG00000024577	CNOT6	100	81.709	Ursus_maritimus
ENSIPUG00000019831	cnot6a	83	89.189	ENSVPAG00000003593	CNOT6	83	89.189	Vicugna_pacos
ENSIPUG00000019831	cnot6a	100	85.842	ENSVVUG00000026940	CNOT6	100	85.842	Vulpes_vulpes
ENSIPUG00000019831	cnot6a	100	86.201	ENSXCOG00000003360	cnot6b	100	86.201	Xiphophorus_couchianus
ENSIPUG00000019831	cnot6a	100	89.088	ENSXMAG00000008730	cnot6b	100	89.088	Xiphophorus_maculatus