EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000020165 (Gene tree)
Gene ID: 108269235
Gene Symbol: npm1b
Alias: npm4
Full Name: nucleophosmin-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 30182 bases
Position: chr8:8163535-8193716
Accession: 108269235
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000029842	Nucleoplasmin	PF03066.15	7.7e-36	1	1
ENSIPUP00000029858	Nucleoplasmin	PF03066.15	2.7e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000031061	-	2331	-	ENSIPUP00000029858	286 (aa)	-	-
ENSIPUT00000031045	-	2414	XM_017474975	ENSIPUP00000029842	300 (aa)	XP_017330464	A0A2D0RKK3

Gene Model

Click here to download ENSIPUG00000020165's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000020165's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000020165	npm1b	97	41.311	ENSIPUG00000019452	npm1	98	41.137

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000020165	npm1b	99	61.111	ENSAPOG00000004268	npm1b	99	60.458	Acanthochromis_polyacanthus
ENSIPUG00000020165	npm1b	99	63.787	ENSAOCG00000012549	npm1b	99	63.123	Amphiprion_ocellaris
ENSIPUG00000020165	npm1b	99	62.667	ENSAPEG00000000868	npm1b	99	61.333	Amphiprion_percula
ENSIPUG00000020165	npm1b	99	59.801	ENSATEG00000006254	npm1b	99	61.639	Anabas_testudineus
ENSIPUG00000020165	npm1b	96	44.330	ENSACAG00000015626	-	96	44.330	Anolis_carolinensis
ENSIPUG00000020165	npm1b	100	78.405	ENSAMXG00000042148	npm1b	100	79.070	Astyanax_mexicanus
ENSIPUG00000020165	npm1b	72	36.111	ENSCAFG00000023359	-	58	38.961	Canis_familiaris
ENSIPUG00000020165	npm1b	96	43.878	ENSCPBG00000021221	-	58	43.729	Chrysemys_picta_bellii
ENSIPUG00000020165	npm1b	99	57.843	ENSCSEG00000004530	npm1b	99	59.935	Cynoglossus_semilaevis
ENSIPUG00000020165	npm1b	99	57.143	ENSCVAG00000013016	npm1b	99	56.478	Cyprinodon_variegatus
ENSIPUG00000020165	npm1b	100	73.754	ENSDARG00000037675	npm1b	100	74.086	Danio_rerio
ENSIPUG00000020165	npm1b	99	62.903	ENSELUG00000022123	npm1b	98	62.258	Esox_lucius
ENSIPUG00000020165	npm1b	95	45.704	ENSFALG00000003320	-	94	45.704	Ficedula_albicollis
ENSIPUG00000020165	npm1b	99	60.197	ENSFHEG00000020794	npm1b	99	59.868	Fundulus_heteroclitus
ENSIPUG00000020165	npm1b	99	58.746	ENSGMOG00000002689	npm1b	100	58.497	Gadus_morhua
ENSIPUG00000020165	npm1b	96	45.918	ENSGALG00000002197	-	69	45.918	Gallus_gallus
ENSIPUG00000020165	npm1b	99	55.000	ENSGAFG00000017709	npm1b	99	55.667	Gambusia_affinis
ENSIPUG00000020165	npm1b	99	57.667	ENSGACG00000016706	npm1b	100	61.238	Gasterosteus_aculeatus
ENSIPUG00000020165	npm1b	96	44.898	ENSGAGG00000020250	-	96	44.898	Gopherus_agassizii
ENSIPUG00000020165	npm1b	99	61.462	ENSHBUG00000019903	npm1b	94	61.130	Haplochromis_burtoni
ENSIPUG00000020165	npm1b	99	54.902	ENSHCOG00000003895	npm1b	99	58.553	Hippocampus_comes
ENSIPUG00000020165	npm1b	100	60.000	ENSKMAG00000008260	npm1b	100	59.333	Kryptolebias_marmoratus
ENSIPUG00000020165	npm1b	97	35.862	ENSLACG00000013460	-	96	35.862	Latimeria_chalumnae
ENSIPUG00000020165	npm1b	92	45.302	ENSLACG00000001779	-	100	44.710	Latimeria_chalumnae
ENSIPUG00000020165	npm1b	94	49.831	ENSLOCG00000001942	npm1b	99	50.847	Lepisosteus_oculatus
ENSIPUG00000020165	npm1b	75	58.824	ENSMAMG00000015335	npm1b	98	58.824	Mastacembelus_armatus
ENSIPUG00000020165	npm1b	94	44.599	ENSMGAG00000001591	-	100	44.599	Meleagris_gallopavo
ENSIPUG00000020165	npm1b	85	59.109	ENSMALG00000015383	npm1b	98	60.494	Monopterus_albus
ENSIPUG00000020165	npm1b	99	58.140	ENSONIG00000001397	npm1b	98	59.667	Oreochromis_niloticus
ENSIPUG00000020165	npm1b	96	55.862	ENSOMEG00000003414	npm1b	95	55.017	Oryzias_melastigma
ENSIPUG00000020165	npm1b	99	59.164	ENSPKIG00000020050	npm1b	99	59.486	Paramormyrops_kingsleyae
ENSIPUG00000020165	npm1b	97	43.144	ENSPSIG00000011204	-	92	43.051	Pelodiscus_sinensis
ENSIPUG00000020165	npm1b	99	57.807	ENSPFOG00000018357	npm1b	99	57.143	Poecilia_formosa
ENSIPUG00000020165	npm1b	100	82.060	ENSPNAG00000005498	npm1b	100	81.063	Pygocentrus_nattereri
ENSIPUG00000020165	npm1b	99	57.792	ENSSFOG00015005064	npm1b	99	55.844	Scleropages_formosus
ENSIPUG00000020165	npm1b	99	56.678	ENSSMAG00000008088	npm1b	99	58.766	Scophthalmus_maximus
ENSIPUG00000020165	npm1b	99	61.889	ENSSDUG00000007726	npm1b	99	61.333	Seriola_dumerili
ENSIPUG00000020165	npm1b	99	61.564	ENSSLDG00000021396	npm1b	99	61.000	Seriola_lalandi_dorsalis
ENSIPUG00000020165	npm1b	51	50.000	ENSSPUG00000015604	-	78	50.000	Sphenodon_punctatus
ENSIPUG00000020165	npm1b	99	58.940	ENSSPAG00000011152	npm1b	99	61.921	Stegastes_partitus
ENSIPUG00000020165	npm1b	94	42.612	ENSTGUG00000014970	-	100	42.612	Taeniopygia_guttata
ENSIPUG00000020165	npm1b	99	57.667	ENSTRUG00000008105	npm1b	94	57.667	Takifugu_rubripes
ENSIPUG00000020165	npm1b	99	56.623	ENSTNIG00000013057	npm1b	99	55.629	Tetraodon_nigroviridis
ENSIPUG00000020165	npm1b	97	45.608	ENSXETG00000008403	npm1	95	43.919	Xenopus_tropicalis
ENSIPUG00000020165	npm1b	99	57.807	ENSXMAG00000001986	npm1b	99	58.472	Xiphophorus_maculatus