EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000020313 (Gene tree)
Gene ID: -
Gene Symbol: ppargc1a
Alias: PGC1|gb:dq017637|ppargc1al
Full Name: PPARG coactivator 1 alpha
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 41490 bases
Position: chr7:14058297-14099786
Accession: 108267918
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000030088	RRM_1	PF00076.22	6e-06	1	1
ENSIPUP00000030071	RRM_1	PF00076.22	6.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000031283	-	7150	XM_017472435	ENSIPUP00000030071	1157 (aa)	XP_017327924	-
ENSIPUT00000031302	-	6955	XM_017472438	ENSIPUP00000030088	1092 (aa)	XP_017327927	-

Gene Model

Click here to download ENSIPUG00000020313's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000020313's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000020313	ppargc1a	77	54.175	ENSAPOG00000018632	ppargc1a	95	94.737	Acanthochromis_polyacanthus
ENSIPUG00000020313	ppargc1a	60	93.421	ENSACIG00000009732	ppargc1a	91	93.421	Amphilophus_citrinellus
ENSIPUG00000020313	ppargc1a	60	94.737	ENSAOCG00000006754	ppargc1a	95	94.737	Amphiprion_ocellaris
ENSIPUG00000020313	ppargc1a	67	94.737	ENSATEG00000016702	ppargc1a	92	94.737	Anabas_testudineus
ENSIPUG00000020313	ppargc1a	51	70.435	ENSAPLG00000005303	PPARGC1A	96	70.435	Anas_platyrhynchos
ENSIPUG00000020313	ppargc1a	67	88.158	ENSACAG00000000741	PPARGC1A	88	88.158	Anolis_carolinensis
ENSIPUG00000020313	ppargc1a	60	94.737	ENSACLG00000001002	ppargc1a	92	94.737	Astatotilapia_calliptera
ENSIPUG00000020313	ppargc1a	70	96.708	ENSAMXG00000002461	ppargc1a	98	96.476	Astyanax_mexicanus
ENSIPUG00000020313	ppargc1a	66	87.097	ENSCJAG00000013024	PPARGC1A	86	87.097	Callithrix_jacchus
ENSIPUG00000020313	ppargc1a	60	83.333	ENSCCAG00000024681	PPARGC1A	96	69.828	Cebus_capucinus
ENSIPUG00000020313	ppargc1a	53	52.239	ENSCPBG00000007891	PPARGC1B	53	52.239	Chrysemys_picta_bellii
ENSIPUG00000020313	ppargc1a	77	54.391	ENSCSEG00000006884	ppargc1a	95	94.737	Cynoglossus_semilaevis
ENSIPUG00000020313	ppargc1a	69	72.650	ENSCVAG00000016547	ppargc1a	91	72.650	Cyprinodon_variegatus
ENSIPUG00000020313	ppargc1a	69	89.655	ENSDARG00000067829	ppargc1a	92	89.655	Danio_rerio
ENSIPUG00000020313	ppargc1a	59	87.097	ENSDNOG00000041106	PPARGC1A	96	70.870	Dasypus_novemcinctus
ENSIPUG00000020313	ppargc1a	66	88.333	ENSEEUG00000009219	PPARGC1A	87	88.333	Erinaceus_europaeus
ENSIPUG00000020313	ppargc1a	99	96.053	ENSELUG00000017027	ppargc1a	95	96.053	Esox_lucius
ENSIPUG00000020313	ppargc1a	61	87.302	ENSFALG00000009211	PPARGC1A	95	70.507	Ficedula_albicollis
ENSIPUG00000020313	ppargc1a	59	96.053	ENSFHEG00000021990	ppargc1a	95	96.053	Fundulus_heteroclitus
ENSIPUG00000020313	ppargc1a	51	71.304	ENSGALG00000042851	PPARGC1A	96	71.304	Gallus_gallus
ENSIPUG00000020313	ppargc1a	59	97.368	ENSGAFG00000015514	ppargc1a	95	97.368	Gambusia_affinis
ENSIPUG00000020313	ppargc1a	67	84.783	ENSGAGG00000007043	PPARGC1A	91	84.783	Gopherus_agassizii
ENSIPUG00000020313	ppargc1a	53	42.927	ENSGGOG00000009810	PPARGC1A	88	83.333	Gorilla_gorilla
ENSIPUG00000020313	ppargc1a	60	94.737	ENSHBUG00000005269	ppargc1a	95	94.737	Haplochromis_burtoni
ENSIPUG00000020313	ppargc1a	69	85.470	ENSHCOG00000014886	ppargc1a	92	85.470	Hippocampus_comes
ENSIPUG00000020313	ppargc1a	67	39.524	ENSLACG00000011232	PPARGC1B	54	53.020	Latimeria_chalumnae
ENSIPUG00000020313	ppargc1a	59	89.610	ENSLACG00000014054	PPARGC1A	95	73.611	Latimeria_chalumnae
ENSIPUG00000020313	ppargc1a	70	84.211	ENSLAFG00000012981	PPARGC1A	92	84.211	Loxodonta_africana
ENSIPUG00000020313	ppargc1a	67	83.333	ENSMFAG00000000534	PPARGC1A	88	83.333	Macaca_fascicularis
ENSIPUG00000020313	ppargc1a	67	83.333	ENSMNEG00000028682	PPARGC1A	88	83.333	Macaca_nemestrina
ENSIPUG00000020313	ppargc1a	53	42.649	ENSMLEG00000034233	PPARGC1A	88	83.333	Mandrillus_leucophaeus
ENSIPUG00000020313	ppargc1a	77	52.437	ENSMZEG00005001739	ppargc1a	95	94.737	Maylandia_zebra
ENSIPUG00000020313	ppargc1a	51	70.435	ENSMGAG00000012485	PPARGC1A	88	84.211	Meleagris_gallopavo
ENSIPUG00000020313	ppargc1a	51	68.966	ENSMICG00000015390	PPARGC1A	99	68.966	Microcebus_murinus
ENSIPUG00000020313	ppargc1a	59	93.421	ENSMMOG00000011847	ppargc1a	85	93.421	Mola_mola
ENSIPUG00000020313	ppargc1a	69	80.263	ENSNGAG00000015090	Ppargc1a	91	80.263	Nannospalax_galili
ENSIPUG00000020313	ppargc1a	60	94.737	ENSNBRG00000023403	ppargc1a	91	94.737	Neolamprologus_brichardi
ENSIPUG00000020313	ppargc1a	67	83.333	ENSNLEG00000016760	PPARGC1A	88	83.333	Nomascus_leucogenys
ENSIPUG00000020313	ppargc1a	64	76.364	ENSOANG00000006680	PPARGC1A	96	74.783	Ornithorhynchus_anatinus
ENSIPUG00000020313	ppargc1a	50	85.597	ENSORLG00000004788	ppargc1a	95	94.737	Oryzias_latipes
ENSIPUG00000020313	ppargc1a	77	51.852	ENSORLG00020014690	ppargc1a	95	94.737	Oryzias_latipes_hni
ENSIPUG00000020313	ppargc1a	50	85.185	ENSORLG00015012206	ppargc1a	95	94.737	Oryzias_latipes_hsok
ENSIPUG00000020313	ppargc1a	60	94.737	ENSOMEG00000000670	ppargc1a	92	94.737	Oryzias_melastigma
ENSIPUG00000020313	ppargc1a	60	82.051	ENSOGAG00000014559	PPARGC1A	96	68.534	Otolemur_garnettii
ENSIPUG00000020313	ppargc1a	91	93.443	ENSPKIG00000002531	ppargc1a	91	93.443	Paramormyrops_kingsleyae
ENSIPUG00000020313	ppargc1a	70	85.526	ENSPSIG00000011790	PPARGC1A	91	85.526	Pelodiscus_sinensis
ENSIPUG00000020313	ppargc1a	54	48.366	ENSPSIG00000008358	PPARGC1B	54	47.403	Pelodiscus_sinensis
ENSIPUG00000020313	ppargc1a	60	85.526	ENSPCIG00000015835	PPARGC1A	96	73.043	Phascolarctos_cinereus
ENSIPUG00000020313	ppargc1a	77	51.680	ENSPMEG00000000720	ppargc1a	95	97.368	Poecilia_mexicana
ENSIPUG00000020313	ppargc1a	62	84.211	ENSPCAG00000016308	PPARGC1A	100	69.565	Procavia_capensis
ENSIPUG00000020313	ppargc1a	60	82.051	ENSPCOG00000022858	PPARGC1A	96	68.966	Propithecus_coquereli
ENSIPUG00000020313	ppargc1a	60	94.737	ENSPNYG00000006846	ppargc1a	95	94.737	Pundamilia_nyererei
ENSIPUG00000020313	ppargc1a	70	96.708	ENSPNAG00000010393	ppargc1a	99	95.473	Pygocentrus_nattereri
ENSIPUG00000020313	ppargc1a	60	83.333	ENSSBOG00000006423	PPARGC1A	96	69.828	Saimiri_boliviensis_boliviensis
ENSIPUG00000020313	ppargc1a	60	85.526	ENSSHAG00000010033	PPARGC1A	92	72.609	Sarcophilus_harrisii
ENSIPUG00000020313	ppargc1a	70	70.782	ENSSFOG00015018522	ppargc1a	94	70.782	Scleropages_formosus
ENSIPUG00000020313	ppargc1a	99	94.737	ENSSMAG00000011571	ppargc1a	95	94.737	Scophthalmus_maximus
ENSIPUG00000020313	ppargc1a	67	94.737	ENSSLDG00000006987	ppargc1a	86	94.737	Seriola_lalandi_dorsalis
ENSIPUG00000020313	ppargc1a	57	81.579	ENSSARG00000000575	PPARGC1A	88	81.579	Sorex_araneus
ENSIPUG00000020313	ppargc1a	62	88.158	ENSSPUG00000013556	PPARGC1A	96	72.174	Sphenodon_punctatus
ENSIPUG00000020313	ppargc1a	60	94.737	ENSSPAG00000023514	ppargc1a	92	94.737	Stegastes_partitus
ENSIPUG00000020313	ppargc1a	69	86.842	ENSTGUG00000009487	PPARGC1A	88	86.842	Taeniopygia_guttata
ENSIPUG00000020313	ppargc1a	63	75.882	ENSTRUG00000007210	ppargc1a	85	75.882	Takifugu_rubripes
ENSIPUG00000020313	ppargc1a	60	85.526	ENSXETG00000020468	ppargc1a	96	70.435	Xenopus_tropicalis
ENSIPUG00000020313	ppargc1a	77	52.621	ENSXMAG00000007748	ppargc1a	95	97.368	Xiphophorus_maculatus