EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000020421 (Gene tree)
Gene ID: 108256953
Gene Symbol: pum1
Alias: fb96a03|si:ch211-285e16.1|wu:fb96a03|wu:fb96a08|zgc:63671
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 12952 bases
Position: chr24:7662330-7675281
Accession: 108256953
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000030237	PUF	PF00806.19	4.8e-69	1	8
ENSIPUP00000030237	PUF	PF00806.19	4.8e-69	2	8
ENSIPUP00000030237	PUF	PF00806.19	4.8e-69	3	8
ENSIPUP00000030237	PUF	PF00806.19	4.8e-69	4	8
ENSIPUP00000030237	PUF	PF00806.19	4.8e-69	5	8
ENSIPUP00000030237	PUF	PF00806.19	4.8e-69	6	8
ENSIPUP00000030237	PUF	PF00806.19	4.8e-69	7	8
ENSIPUP00000030237	PUF	PF00806.19	4.8e-69	8	8
ENSIPUP00000030267	PUF	PF00806.19	9.7e-50	1	5
ENSIPUP00000030267	PUF	PF00806.19	9.7e-50	2	5
ENSIPUP00000030267	PUF	PF00806.19	9.7e-50	3	5
ENSIPUP00000030267	PUF	PF00806.19	9.7e-50	4	5
ENSIPUP00000030267	PUF	PF00806.19	9.7e-50	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000031484	-	2823	-	ENSIPUP00000030267	940 (aa)	-	-
ENSIPUT00000031454	-	5102	XM_017454265	ENSIPUP00000030237	1159 (aa)	XP_017309754	A0A2D0PUP3

Gene Model

Click here to download ENSIPUG00000020421's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000020421's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000020421	pum1	93	92.029	ENSG00000134644	PUM1	98	92.029	Homo_sapiens
ENSIPUG00000020421	pum1	100	81.213	ENSAPOG00000021632	pum1	100	95.422	Acanthochromis_polyacanthus
ENSIPUG00000020421	pum1	100	78.008	ENSAMEG00000017656	PUM1	97	77.140	Ailuropoda_melanoleuca
ENSIPUG00000020421	pum1	100	81.118	ENSACIG00000021013	pum1	100	81.626	Amphilophus_citrinellus
ENSIPUG00000020421	pum1	100	81.213	ENSAOCG00000003944	pum1	100	95.422	Amphiprion_ocellaris
ENSIPUG00000020421	pum1	100	81.213	ENSAPEG00000014550	pum1	100	95.422	Amphiprion_percula
ENSIPUG00000020421	pum1	100	81.045	ENSATEG00000016004	pum1	100	80.708	Anabas_testudineus
ENSIPUG00000020421	pum1	100	78.738	ENSAPLG00000009351	PUM1	100	77.805	Anas_platyrhynchos
ENSIPUG00000020421	pum1	100	77.787	ENSACAG00000000682	PUM1	98	77.667	Anolis_carolinensis
ENSIPUG00000020421	pum1	93	91.787	ENSANAG00000027865	PUM1	100	91.787	Aotus_nancymaae
ENSIPUG00000020421	pum1	100	76.386	ENSACLG00000019354	pum1	100	82.206	Astatotilapia_calliptera
ENSIPUG00000020421	pum1	100	96.204	ENSAMXG00000020607	pum1	96	96.204	Astyanax_mexicanus
ENSIPUG00000020421	pum1	93	92.512	ENSBTAG00000018979	PUM1	100	92.512	Bos_taurus
ENSIPUG00000020421	pum1	93	92.029	ENSCJAG00000006035	PUM1	100	92.029	Callithrix_jacchus
ENSIPUG00000020421	pum1	100	77.212	ENSCAFG00000011205	PUM1	100	76.525	Canis_familiaris
ENSIPUG00000020421	pum1	85	92.029	ENSCAFG00020024616	PUM1	98	82.882	Canis_lupus_dingo
ENSIPUG00000020421	pum1	93	92.029	ENSCHIG00000012952	PUM1	100	92.029	Capra_hircus
ENSIPUG00000020421	pum1	100	80.000	ENSTSYG00000008868	PUM1	100	82.850	Carlito_syrichta
ENSIPUG00000020421	pum1	100	77.741	ENSCPOG00000031613	PUM1	100	82.512	Cavia_porcellus
ENSIPUG00000020421	pum1	93	92.512	ENSCATG00000017991	PUM1	100	92.512	Cercocebus_atys
ENSIPUG00000020421	pum1	93	91.787	ENSCLAG00000007662	PUM1	100	91.787	Chinchilla_lanigera
ENSIPUG00000020421	pum1	100	76.955	ENSCSAG00000001028	PUM1	100	75.700	Chlorocebus_sabaeus
ENSIPUG00000020421	pum1	99	69.565	ENSCHOG00000010245	PUM1	93	67.525	Choloepus_hoffmanni
ENSIPUG00000020421	pum1	93	92.754	ENSCPBG00000009288	PUM1	100	92.754	Chrysemys_picta_bellii
ENSIPUG00000020421	pum1	93	92.029	ENSCANG00000042606	PUM1	100	92.029	Colobus_angolensis_palliatus
ENSIPUG00000020421	pum1	100	77.621	ENSCGRG00001024949	Pum1	100	82.244	Cricetulus_griseus_chok1gshd
ENSIPUG00000020421	pum1	100	77.621	ENSCGRG00000014197	Pum1	100	82.244	Cricetulus_griseus_crigri
ENSIPUG00000020421	pum1	91	81.279	ENSCSEG00000015981	pum1	100	82.113	Cynoglossus_semilaevis
ENSIPUG00000020421	pum1	100	80.539	ENSCVAG00000007043	pum1	100	80.623	Cyprinodon_variegatus
ENSIPUG00000020421	pum1	100	93.788	ENSDARG00000099256	pum1	100	93.788	Danio_rerio
ENSIPUG00000020421	pum1	100	78.073	ENSDNOG00000010939	PUM1	100	77.224	Dasypus_novemcinctus
ENSIPUG00000020421	pum1	84	91.787	ENSDORG00000001875	Pum1	100	91.787	Dipodomys_ordii
ENSIPUG00000020421	pum1	98	69.787	ENSETEG00000004355	PUM1	87	74.470	Echinops_telfairi
ENSIPUG00000020421	pum1	100	78.138	ENSEASG00005010813	PUM1	100	77.288	Equus_asinus_asinus
ENSIPUG00000020421	pum1	100	77.990	ENSECAG00000021369	PUM1	100	77.140	Equus_caballus
ENSIPUG00000020421	pum1	77	91.778	ENSEEUG00000003871	PUM1	74	91.778	Erinaceus_europaeus
ENSIPUG00000020421	pum1	100	81.643	ENSELUG00000002409	pum1	100	88.571	Esox_lucius
ENSIPUG00000020421	pum1	93	92.512	ENSFCAG00000010374	PUM1	100	82.882	Felis_catus
ENSIPUG00000020421	pum1	100	78.577	ENSFALG00000001214	PUM1	97	77.667	Ficedula_albicollis
ENSIPUG00000020421	pum1	100	77.741	ENSFDAG00000011319	PUM1	100	82.512	Fukomys_damarensis
ENSIPUG00000020421	pum1	100	73.499	ENSGMOG00000010491	pum1	92	78.072	Gadus_morhua
ENSIPUG00000020421	pum1	95	91.903	ENSGALG00000042598	PUM1	98	92.292	Gallus_gallus
ENSIPUG00000020421	pum1	100	80.876	ENSGAFG00000015617	pum1	100	94.940	Gambusia_affinis
ENSIPUG00000020421	pum1	99	80.356	ENSGACG00000005717	pum1	100	80.356	Gasterosteus_aculeatus
ENSIPUG00000020421	pum1	95	92.105	ENSGAGG00000001290	PUM1	98	92.500	Gopherus_agassizii
ENSIPUG00000020421	pum1	93	92.029	ENSGGOG00000011983	PUM1	100	92.029	Gorilla_gorilla
ENSIPUG00000020421	pum1	100	80.960	ENSHBUG00000018718	pum1	100	80.792	Haplochromis_burtoni
ENSIPUG00000020421	pum1	100	77.658	ENSHGLG00000013819	Pum1	100	82.389	Heterocephalus_glaber_female
ENSIPUG00000020421	pum1	100	77.658	ENSHGLG00100008621	Pum1	100	82.389	Heterocephalus_glaber_male
ENSIPUG00000020421	pum1	91	78.366	ENSHCOG00000005149	pum1	100	78.273	Hippocampus_comes
ENSIPUG00000020421	pum1	100	78.055	ENSSTOG00000010757	PUM1	100	82.759	Ictidomys_tridecemlineatus
ENSIPUG00000020421	pum1	100	78.055	ENSJJAG00000000530	Pum1	100	82.759	Jaculus_jaculus
ENSIPUG00000020421	pum1	100	80.876	ENSKMAG00000003481	pum1	100	81.382	Kryptolebias_marmoratus
ENSIPUG00000020421	pum1	100	80.270	ENSLBEG00000002527	pum1	100	80.523	Labrus_bergylta
ENSIPUG00000020421	pum1	100	76.886	ENSLACG00000017188	PUM1	99	75.498	Latimeria_chalumnae
ENSIPUG00000020421	pum1	100	83.472	ENSLOCG00000005210	pum1	99	82.707	Lepisosteus_oculatus
ENSIPUG00000020421	pum1	100	76.974	ENSLAFG00000003178	PUM1	100	77.038	Loxodonta_africana
ENSIPUG00000020421	pum1	93	92.512	ENSMFAG00000010291	PUM1	100	92.512	Macaca_fascicularis
ENSIPUG00000020421	pum1	93	92.029	ENSMMUG00000013520	PUM1	100	92.029	Macaca_mulatta
ENSIPUG00000020421	pum1	93	92.029	ENSMNEG00000034639	PUM1	100	92.029	Macaca_nemestrina
ENSIPUG00000020421	pum1	93	92.029	ENSMLEG00000038743	PUM1	100	92.029	Mandrillus_leucophaeus
ENSIPUG00000020421	pum1	100	80.960	ENSMAMG00000011606	pum1	100	81.285	Mastacembelus_armatus
ENSIPUG00000020421	pum1	100	80.960	ENSMZEG00005005834	pum1	100	80.792	Maylandia_zebra
ENSIPUG00000020421	pum1	100	78.637	ENSMGAG00000000724	PUM1	100	79.353	Meleagris_gallopavo
ENSIPUG00000020421	pum1	100	77.704	ENSMAUG00000022090	Pum1	100	82.099	Mesocricetus_auratus
ENSIPUG00000020421	pum1	93	92.271	ENSMICG00000007713	-	100	92.271	Microcebus_murinus
ENSIPUG00000020421	pum1	92	89.157	ENSMICG00000012213	-	100	89.157	Microcebus_murinus
ENSIPUG00000020421	pum1	100	77.889	ENSMOCG00000015463	Pum1	100	82.491	Microtus_ochrogaster
ENSIPUG00000020421	pum1	84	93.976	ENSMMOG00000019817	pum1	100	95.663	Mola_mola
ENSIPUG00000020421	pum1	100	77.344	ENSMODG00000017067	PUM1	100	77.159	Monodelphis_domestica
ENSIPUG00000020421	pum1	84	93.735	ENSMALG00000016399	pum1	100	95.422	Monopterus_albus
ENSIPUG00000020421	pum1	100	77.307	MGP_CAROLIEiJ_G0026549	Pum1	100	82.266	Mus_caroli
ENSIPUG00000020421	pum1	100	77.307	ENSMUSG00000028580	Pum1	100	82.143	Mus_musculus
ENSIPUG00000020421	pum1	100	77.224	MGP_PahariEiJ_G0028881	Pum1	100	82.143	Mus_pahari
ENSIPUG00000020421	pum1	100	77.307	MGP_SPRETEiJ_G0027529	Pum1	100	82.143	Mus_spretus
ENSIPUG00000020421	pum1	100	78.055	ENSMPUG00000015454	PUM1	100	77.205	Mustela_putorius_furo
ENSIPUG00000020421	pum1	100	77.824	ENSMLUG00000006490	PUM1	100	76.808	Myotis_lucifugus
ENSIPUG00000020421	pum1	100	77.972	ENSNGAG00000002378	Pum1	100	78.936	Nannospalax_galili
ENSIPUG00000020421	pum1	80	85.767	ENSNBRG00000010689	pum1	100	86.015	Neolamprologus_brichardi
ENSIPUG00000020421	pum1	93	88.889	ENSNLEG00000001151	PUM1	100	88.889	Nomascus_leucogenys
ENSIPUG00000020421	pum1	74	78.425	ENSMEUG00000000976	-	69	85.714	Notamacropus_eugenii
ENSIPUG00000020421	pum1	82	89.883	ENSOPRG00000001776	PUM1	70	90.574	Ochotona_princeps
ENSIPUG00000020421	pum1	100	77.805	ENSODEG00000003465	PUM1	100	82.635	Octodon_degus
ENSIPUG00000020421	pum1	100	81.129	ENSONIG00000002290	pum1	100	81.129	Oreochromis_niloticus
ENSIPUG00000020421	pum1	84	65.240	ENSOANG00000004902	-	100	65.373	Ornithorhynchus_anatinus
ENSIPUG00000020421	pum1	99	77.787	ENSOCUG00000008641	PUM1	99	76.936	Oryctolagus_cuniculus
ENSIPUG00000020421	pum1	100	80.672	ENSORLG00000011482	pum1	100	80.252	Oryzias_latipes
ENSIPUG00000020421	pum1	100	80.672	ENSORLG00020019461	pum1	100	80.084	Oryzias_latipes_hni
ENSIPUG00000020421	pum1	100	80.756	ENSORLG00015011375	pum1	100	80.168	Oryzias_latipes_hsok
ENSIPUG00000020421	pum1	84	95.181	ENSOMEG00000009312	pum1	100	95.181	Oryzias_melastigma
ENSIPUG00000020421	pum1	100	75.436	ENSOGAG00000011063	PUM1	100	75.000	Otolemur_garnettii
ENSIPUG00000020421	pum1	93	92.029	ENSOARG00000001899	PUM1	100	92.029	Ovis_aries
ENSIPUG00000020421	pum1	93	92.029	ENSPPAG00000044003	PUM1	100	92.029	Pan_paniscus
ENSIPUG00000020421	pum1	100	78.138	ENSPPRG00000001370	PUM1	100	82.882	Panthera_pardus
ENSIPUG00000020421	pum1	100	77.972	ENSPTIG00000010798	PUM1	100	82.635	Panthera_tigris_altaica
ENSIPUG00000020421	pum1	93	92.029	ENSPTRG00000000453	PUM1	100	92.029	Pan_troglodytes
ENSIPUG00000020421	pum1	93	92.512	ENSPANG00000016338	PUM1	100	92.512	Papio_anubis
ENSIPUG00000020421	pum1	93	93.237	ENSPKIG00000010578	pum1	100	79.215	Paramormyrops_kingsleyae
ENSIPUG00000020421	pum1	100	78.304	ENSPSIG00000014118	PUM1	100	77.704	Pelodiscus_sinensis
ENSIPUG00000020421	pum1	80	84.549	ENSPMGG00000005836	pum1	100	87.639	Periophthalmus_magnuspinnatus
ENSIPUG00000020421	pum1	100	77.704	ENSPEMG00000010009	Pum1	100	82.099	Peromyscus_maniculatus_bairdii
ENSIPUG00000020421	pum1	93	92.512	ENSPCIG00000014151	PUM1	100	92.512	Phascolarctos_cinereus
ENSIPUG00000020421	pum1	95	82.259	ENSPFOG00000007289	pum1	99	87.328	Poecilia_formosa
ENSIPUG00000020421	pum1	100	79.344	ENSPLAG00000007256	pum1	100	81.230	Poecilia_latipinna
ENSIPUG00000020421	pum1	100	76.627	ENSPMEG00000019543	pum1	99	81.659	Poecilia_mexicana
ENSIPUG00000020421	pum1	100	80.488	ENSPREG00000005195	pum1	100	86.148	Poecilia_reticulata
ENSIPUG00000020421	pum1	100	76.528	ENSPPYG00000001621	PUM1	100	75.693	Pongo_abelii
ENSIPUG00000020421	pum1	76	92.593	ENSPCAG00000001979	PUM1	74	92.593	Procavia_capensis
ENSIPUG00000020421	pum1	93	92.271	ENSPCOG00000004398	PUM1	100	92.271	Propithecus_coquereli
ENSIPUG00000020421	pum1	100	76.060	ENSPVAG00000005207	PUM1	97	75.208	Pteropus_vampyrus
ENSIPUG00000020421	pum1	100	81.045	ENSPNYG00000009518	pum1	100	85.542	Pundamilia_nyererei
ENSIPUG00000020421	pum1	100	96.549	ENSPNAG00000026728	pum1	100	96.585	Pygocentrus_nattereri
ENSIPUG00000020421	pum1	100	77.639	ENSRNOG00000011709	Pum1	100	76.789	Rattus_norvegicus
ENSIPUG00000020421	pum1	93	92.512	ENSRBIG00000042521	PUM1	100	92.512	Rhinopithecus_bieti
ENSIPUG00000020421	pum1	93	92.029	ENSRROG00000020156	PUM1	100	92.029	Rhinopithecus_roxellana
ENSIPUG00000020421	pum1	93	92.029	ENSSBOG00000032037	PUM1	100	92.029	Saimiri_boliviensis_boliviensis
ENSIPUG00000020421	pum1	100	77.261	ENSSHAG00000010918	PUM1	100	77.159	Sarcophilus_harrisii
ENSIPUG00000020421	pum1	100	80.960	ENSSMAG00000010918	pum1	100	95.422	Scophthalmus_maximus
ENSIPUG00000020421	pum1	100	81.213	ENSSDUG00000009021	pum1	100	81.213	Seriola_dumerili
ENSIPUG00000020421	pum1	95	81.335	ENSSLDG00000009667	pum1	100	81.752	Seriola_lalandi_dorsalis
ENSIPUG00000020421	pum1	92	86.275	ENSSARG00000003055	PUM1	91	79.578	Sorex_araneus
ENSIPUG00000020421	pum1	100	78.405	ENSSPUG00000006267	PUM1	100	77.704	Sphenodon_punctatus
ENSIPUG00000020421	pum1	100	81.213	ENSSPAG00000016636	pum1	100	95.422	Stegastes_partitus
ENSIPUG00000020421	pum1	99	90.891	ENSSSCG00000003591	PUM1	100	92.512	Sus_scrofa
ENSIPUG00000020421	pum1	100	81.129	ENSTRUG00000013121	pum1	100	86.015	Takifugu_rubripes
ENSIPUG00000020421	pum1	100	80.553	ENSTNIG00000016983	pum1	99	80.721	Tetraodon_nigroviridis
ENSIPUG00000020421	pum1	87	89.024	ENSTBEG00000013810	PUM1	89	89.024	Tupaia_belangeri
ENSIPUG00000020421	pum1	100	75.845	ENSTTRG00000007436	PUM1	89	79.564	Tursiops_truncatus
ENSIPUG00000020421	pum1	99	76.615	ENSUAMG00000018262	-	100	75.683	Ursus_americanus
ENSIPUG00000020421	pum1	93	92.512	ENSUMAG00000009211	PUM1	89	73.488	Ursus_maritimus
ENSIPUG00000020421	pum1	93	83.764	ENSVPAG00000005902	PUM1	92	83.251	Vicugna_pacos
ENSIPUG00000020421	pum1	93	92.512	ENSVVUG00000014631	PUM1	100	78.958	Vulpes_vulpes
ENSIPUG00000020421	pum1	100	74.958	ENSXETG00000012904	pum1	99	74.604	Xenopus_tropicalis
ENSIPUG00000020421	pum1	100	80.202	ENSXMAG00000002945	pum1	100	81.230	Xiphophorus_maculatus