EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000020607 (Gene tree)
Gene ID: 108265022
Gene Symbol: prdm16
Alias: -
Full Name: PR/SET domain 16
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 172940 bases
Position: chr5:8290830-8463769
Accession: 108265022
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000030579	zf-C2H2	PF00096.26	2.6e-48	1	8
ENSIPUP00000030579	zf-C2H2	PF00096.26	2.6e-48	2	8
ENSIPUP00000030579	zf-C2H2	PF00096.26	2.6e-48	3	8
ENSIPUP00000030579	zf-C2H2	PF00096.26	2.6e-48	4	8
ENSIPUP00000030579	zf-C2H2	PF00096.26	2.6e-48	5	8
ENSIPUP00000030579	zf-C2H2	PF00096.26	2.6e-48	6	8
ENSIPUP00000030579	zf-C2H2	PF00096.26	2.6e-48	7	8
ENSIPUP00000030579	zf-C2H2	PF00096.26	2.6e-48	8	8
ENSIPUP00000030550	zf-C2H2	PF00096.26	1.3e-47	1	8
ENSIPUP00000030550	zf-C2H2	PF00096.26	1.3e-47	2	8
ENSIPUP00000030550	zf-C2H2	PF00096.26	1.3e-47	3	8
ENSIPUP00000030550	zf-C2H2	PF00096.26	1.3e-47	4	8
ENSIPUP00000030550	zf-C2H2	PF00096.26	1.3e-47	5	8
ENSIPUP00000030550	zf-C2H2	PF00096.26	1.3e-47	6	8
ENSIPUP00000030550	zf-C2H2	PF00096.26	1.3e-47	7	8
ENSIPUP00000030550	zf-C2H2	PF00096.26	1.3e-47	8	8
ENSIPUP00000030530	zf-C2H2	PF00096.26	1.5e-46	1	8
ENSIPUP00000030530	zf-C2H2	PF00096.26	1.5e-46	2	8
ENSIPUP00000030530	zf-C2H2	PF00096.26	1.5e-46	3	8
ENSIPUP00000030530	zf-C2H2	PF00096.26	1.5e-46	4	8
ENSIPUP00000030530	zf-C2H2	PF00096.26	1.5e-46	5	8
ENSIPUP00000030530	zf-C2H2	PF00096.26	1.5e-46	6	8
ENSIPUP00000030530	zf-C2H2	PF00096.26	1.5e-46	7	8
ENSIPUP00000030530	zf-C2H2	PF00096.26	1.5e-46	8	8
ENSIPUP00000030570	zf-C2H2	PF00096.26	1e-42	1	7
ENSIPUP00000030570	zf-C2H2	PF00096.26	1e-42	2	7
ENSIPUP00000030570	zf-C2H2	PF00096.26	1e-42	3	7
ENSIPUP00000030570	zf-C2H2	PF00096.26	1e-42	4	7
ENSIPUP00000030570	zf-C2H2	PF00096.26	1e-42	5	7
ENSIPUP00000030570	zf-C2H2	PF00096.26	1e-42	6	7
ENSIPUP00000030570	zf-C2H2	PF00096.26	1e-42	7	7
ENSIPUP00000030570	zf-met	PF12874.7	9.6e-05	1	1
ENSIPUP00000030579	zf-met	PF12874.7	0.00037	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000031797	-	3483	-	ENSIPUP00000030570	1160 (aa)	-	-
ENSIPUT00000031759	-	7607	XM_017467078	ENSIPUP00000030530	1303 (aa)	XP_017322567	A0A2D0QVW8
ENSIPUT00000031779	-	7565	XM_017467081	ENSIPUP00000030550	1289 (aa)	XP_017322570	-
ENSIPUT00000031810	-	7195	XM_017467084	ENSIPUP00000030579	1125 (aa)	XP_017322573	-

Gene Model

Click here to download ENSIPUG00000020607's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000020607's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000020607	prdm16	100	91.208	ENSAMXG00000014024	si:ch211-263k4.2	100	91.388	Astyanax_mexicanus
ENSIPUG00000020607	prdm16	82	87.768	ENSDARG00000078324	si:ch211-263k4.2	100	87.876	Danio_rerio
ENSIPUG00000020607	prdm16	100	76.493	ENSLOCG00000005336	si:ch211-263k4.2	100	78.197	Lepisosteus_oculatus
ENSIPUG00000020607	prdm16	99	75.334	ENSPKIG00000013811	si:ch211-263k4.2	99	78.228	Paramormyrops_kingsleyae
ENSIPUG00000020607	prdm16	99	86.739	ENSPNAG00000027070	si:ch211-263k4.2	100	91.973	Pygocentrus_nattereri
ENSIPUG00000020607	prdm16	98	72.649	ENSSFOG00015010518	si:ch211-263k4.2	100	72.217	Scleropages_formosus