EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000020857 (Gene tree)
Gene ID: 108257720
Gene Symbol: cpsf2
Alias: zgc:92484
Full Name: cleavage and polyadenylation specific factor 2
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 13222 bases
Position: chr25:15124477-15137698
Accession: 108257720
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000030926	Beta-Casp	PF10996.8	2.8e-20	1	1
ENSIPUP00000030926	Lactamase_B	PF00753.27	1.1e-05	1	1
ENSIPUP00000030926	RMMBL	PF07521.12	1.1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000032165	-	3520	XM_017455682	ENSIPUP00000030926	787 (aa)	XP_017311171	A0A2D0Q0G2

Gene Model

Click here to download ENSIPUG00000020857's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000020857's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000020857	cpsf2	100	85.642	ENSG00000165934	CPSF2	100	88.750	Homo_sapiens
ENSIPUG00000020857	cpsf2	100	90.748	ENSAPOG00000001242	cpsf2	100	90.748	Acanthochromis_polyacanthus
ENSIPUG00000020857	cpsf2	100	90.506	ENSACIG00000009331	cpsf2	100	90.506	Amphilophus_citrinellus
ENSIPUG00000020857	cpsf2	100	90.494	ENSAOCG00000014095	cpsf2	100	90.494	Amphiprion_ocellaris
ENSIPUG00000020857	cpsf2	100	90.494	ENSAPEG00000009158	cpsf2	100	90.494	Amphiprion_percula
ENSIPUG00000020857	cpsf2	96	90.000	ENSATEG00000017644	cpsf2	99	88.963	Anabas_testudineus
ENSIPUG00000020857	cpsf2	100	85.678	ENSAPLG00000006330	CPSF2	100	85.678	Anas_platyrhynchos
ENSIPUG00000020857	cpsf2	100	85.769	ENSACAG00000009245	CPSF2	100	85.769	Anolis_carolinensis
ENSIPUG00000020857	cpsf2	100	85.769	ENSANAG00000022915	CPSF2	100	85.769	Aotus_nancymaae
ENSIPUG00000020857	cpsf2	100	93.393	ENSAMXG00000018696	cpsf2	100	93.393	Astyanax_mexicanus
ENSIPUG00000020857	cpsf2	100	85.769	ENSBTAG00000010227	CPSF2	100	85.769	Bos_taurus
ENSIPUG00000020857	cpsf2	100	42.339	WBGene00017313	cpsf-2	100	42.267	Caenorhabditis_elegans
ENSIPUG00000020857	cpsf2	100	85.769	ENSCJAG00000018069	CPSF2	100	85.769	Callithrix_jacchus
ENSIPUG00000020857	cpsf2	100	85.642	ENSCAFG00000010909	CPSF2	100	85.642	Canis_familiaris
ENSIPUG00000020857	cpsf2	100	85.642	ENSCAFG00020020670	CPSF2	100	85.642	Canis_lupus_dingo
ENSIPUG00000020857	cpsf2	100	85.769	ENSCHIG00000023848	CPSF2	100	85.769	Capra_hircus
ENSIPUG00000020857	cpsf2	100	85.515	ENSTSYG00000009036	CPSF2	100	85.515	Carlito_syrichta
ENSIPUG00000020857	cpsf2	100	85.769	ENSCPOG00000010899	CPSF2	100	85.769	Cavia_porcellus
ENSIPUG00000020857	cpsf2	100	85.769	ENSCCAG00000028088	CPSF2	100	85.769	Cebus_capucinus
ENSIPUG00000020857	cpsf2	100	85.769	ENSCATG00000030132	CPSF2	100	85.769	Cercocebus_atys
ENSIPUG00000020857	cpsf2	100	85.769	ENSCLAG00000012404	CPSF2	100	85.769	Chinchilla_lanigera
ENSIPUG00000020857	cpsf2	100	85.769	ENSCSAG00000011300	CPSF2	100	85.769	Chlorocebus_sabaeus
ENSIPUG00000020857	cpsf2	100	80.051	ENSCHOG00000012904	CPSF2	100	80.051	Choloepus_hoffmanni
ENSIPUG00000020857	cpsf2	100	86.023	ENSCPBG00000008766	CPSF2	97	86.023	Chrysemys_picta_bellii
ENSIPUG00000020857	cpsf2	100	53.598	ENSCING00000007881	-	100	52.978	Ciona_intestinalis
ENSIPUG00000020857	cpsf2	94	85.772	ENSCANG00000041651	CPSF2	100	85.753	Colobus_angolensis_palliatus
ENSIPUG00000020857	cpsf2	100	85.133	ENSCGRG00001006901	Cpsf2	100	85.133	Cricetulus_griseus_chok1gshd
ENSIPUG00000020857	cpsf2	100	85.133	ENSCGRG00000012416	Cpsf2	100	85.133	Cricetulus_griseus_crigri
ENSIPUG00000020857	cpsf2	100	89.861	ENSCSEG00000004116	cpsf2	100	89.861	Cynoglossus_semilaevis
ENSIPUG00000020857	cpsf2	100	89.354	ENSCVAG00000000095	cpsf2	100	89.480	Cyprinodon_variegatus
ENSIPUG00000020857	cpsf2	100	90.127	ENSDARG00000028971	cpsf2	100	90.127	Danio_rerio
ENSIPUG00000020857	cpsf2	100	85.769	ENSDNOG00000042757	CPSF2	100	85.769	Dasypus_novemcinctus
ENSIPUG00000020857	cpsf2	100	85.769	ENSDORG00000013709	Cpsf2	100	85.769	Dipodomys_ordii
ENSIPUG00000020857	cpsf2	100	53.580	FBgn0027873	Cpsf100	100	53.218	Drosophila_melanogaster
ENSIPUG00000020857	cpsf2	100	78.426	ENSETEG00000012123	CPSF2	100	78.426	Echinops_telfairi
ENSIPUG00000020857	cpsf2	52	78.240	ENSEBUG00000012098	cpsf2	93	78.240	Eptatretus_burgeri
ENSIPUG00000020857	cpsf2	89	90.444	ENSEASG00005021193	CPSF2	100	90.444	Equus_asinus_asinus
ENSIPUG00000020857	cpsf2	100	85.642	ENSECAG00000023935	CPSF2	100	85.642	Equus_caballus
ENSIPUG00000020857	cpsf2	100	89.084	ENSELUG00000008442	cpsf2	100	89.084	Esox_lucius
ENSIPUG00000020857	cpsf2	100	85.642	ENSFCAG00000007886	CPSF2	100	85.642	Felis_catus
ENSIPUG00000020857	cpsf2	100	85.769	ENSFALG00000002412	CPSF2	100	85.769	Ficedula_albicollis
ENSIPUG00000020857	cpsf2	100	85.642	ENSFDAG00000006327	CPSF2	100	85.642	Fukomys_damarensis
ENSIPUG00000020857	cpsf2	96	87.843	ENSFHEG00000015465	cpsf2	98	88.235	Fundulus_heteroclitus
ENSIPUG00000020857	cpsf2	100	87.909	ENSGMOG00000008761	cpsf2	100	87.909	Gadus_morhua
ENSIPUG00000020857	cpsf2	100	85.769	ENSGALG00000010783	CPSF2	100	86.277	Gallus_gallus
ENSIPUG00000020857	cpsf2	100	89.354	ENSGAFG00000001407	cpsf2	100	89.354	Gambusia_affinis
ENSIPUG00000020857	cpsf2	100	90.114	ENSGACG00000008418	cpsf2	100	90.114	Gasterosteus_aculeatus
ENSIPUG00000020857	cpsf2	100	85.896	ENSGAGG00000008287	CPSF2	100	85.896	Gopherus_agassizii
ENSIPUG00000020857	cpsf2	100	85.642	ENSGGOG00000011799	CPSF2	100	85.642	Gorilla_gorilla
ENSIPUG00000020857	cpsf2	100	89.861	ENSHBUG00000023466	cpsf2	100	89.861	Haplochromis_burtoni
ENSIPUG00000020857	cpsf2	100	85.769	ENSHGLG00000018311	CPSF2	100	85.769	Heterocephalus_glaber_female
ENSIPUG00000020857	cpsf2	100	85.769	ENSHGLG00100016460	CPSF2	100	85.769	Heterocephalus_glaber_male
ENSIPUG00000020857	cpsf2	100	88.720	ENSHCOG00000019527	cpsf2	98	88.720	Hippocampus_comes
ENSIPUG00000020857	cpsf2	100	85.769	ENSSTOG00000009528	CPSF2	100	85.769	Ictidomys_tridecemlineatus
ENSIPUG00000020857	cpsf2	100	85.642	ENSJJAG00000017925	Cpsf2	100	85.642	Jaculus_jaculus
ENSIPUG00000020857	cpsf2	100	88.213	ENSKMAG00000019429	cpsf2	100	88.213	Kryptolebias_marmoratus
ENSIPUG00000020857	cpsf2	95	88.904	ENSLBEG00000011585	cpsf2	100	89.037	Labrus_bergylta
ENSIPUG00000020857	cpsf2	100	83.863	ENSLACG00000019024	CPSF2	100	84.498	Latimeria_chalumnae
ENSIPUG00000020857	cpsf2	100	89.480	ENSLOCG00000014102	cpsf2	100	89.480	Lepisosteus_oculatus
ENSIPUG00000020857	cpsf2	100	85.425	ENSLAFG00000004891	CPSF2	100	85.425	Loxodonta_africana
ENSIPUG00000020857	cpsf2	100	85.769	ENSMFAG00000041212	CPSF2	100	85.769	Macaca_fascicularis
ENSIPUG00000020857	cpsf2	100	85.769	ENSMMUG00000000699	CPSF2	100	85.769	Macaca_mulatta
ENSIPUG00000020857	cpsf2	100	85.769	ENSMNEG00000031584	CPSF2	100	85.769	Macaca_nemestrina
ENSIPUG00000020857	cpsf2	100	85.769	ENSMLEG00000029394	CPSF2	100	85.769	Mandrillus_leucophaeus
ENSIPUG00000020857	cpsf2	100	90.368	ENSMAMG00000004235	cpsf2	100	90.368	Mastacembelus_armatus
ENSIPUG00000020857	cpsf2	100	89.987	ENSMZEG00005001769	cpsf2	100	89.987	Maylandia_zebra
ENSIPUG00000020857	cpsf2	100	85.533	ENSMGAG00000013122	CPSF2	100	86.041	Meleagris_gallopavo
ENSIPUG00000020857	cpsf2	100	85.133	ENSMAUG00000015160	Cpsf2	100	85.133	Mesocricetus_auratus
ENSIPUG00000020857	cpsf2	100	85.769	ENSMICG00000016441	CPSF2	100	85.769	Microcebus_murinus
ENSIPUG00000020857	cpsf2	100	85.133	ENSMOCG00000015372	Cpsf2	100	85.133	Microtus_ochrogaster
ENSIPUG00000020857	cpsf2	100	85.425	ENSMMOG00000015590	cpsf2	100	85.425	Mola_mola
ENSIPUG00000020857	cpsf2	100	86.023	ENSMODG00000002042	CPSF2	100	86.023	Monodelphis_domestica
ENSIPUG00000020857	cpsf2	100	86.819	ENSMALG00000022275	cpsf2	100	86.819	Monopterus_albus
ENSIPUG00000020857	cpsf2	100	85.133	ENSMUSG00000041781	Cpsf2	100	85.133	Mus_musculus
ENSIPUG00000020857	cpsf2	100	85.006	MGP_PahariEiJ_G0029791	Cpsf2	100	85.006	Mus_pahari
ENSIPUG00000020857	cpsf2	100	85.133	MGP_SPRETEiJ_G0018877	Cpsf2	100	85.133	Mus_spretus
ENSIPUG00000020857	cpsf2	100	85.769	ENSMPUG00000007617	CPSF2	98	85.769	Mustela_putorius_furo
ENSIPUG00000020857	cpsf2	100	85.515	ENSMLUG00000005570	CPSF2	100	85.515	Myotis_lucifugus
ENSIPUG00000020857	cpsf2	100	85.515	ENSNGAG00000020312	Cpsf2	100	85.515	Nannospalax_galili
ENSIPUG00000020857	cpsf2	100	90.241	ENSNBRG00000022402	cpsf2	100	90.241	Neolamprologus_brichardi
ENSIPUG00000020857	cpsf2	100	84.879	ENSNLEG00000017132	CPSF2	100	84.879	Nomascus_leucogenys
ENSIPUG00000020857	cpsf2	91	93.528	ENSMEUG00000008138	CPSF2	91	93.528	Notamacropus_eugenii
ENSIPUG00000020857	cpsf2	86	88.833	ENSOPRG00000008484	-	92	88.833	Ochotona_princeps
ENSIPUG00000020857	cpsf2	100	85.642	ENSODEG00000008682	CPSF2	100	85.642	Octodon_degus
ENSIPUG00000020857	cpsf2	100	90.748	ENSONIG00000005901	cpsf2	100	90.748	Oreochromis_niloticus
ENSIPUG00000020857	cpsf2	100	85.896	ENSOANG00000003822	CPSF2	100	85.896	Ornithorhynchus_anatinus
ENSIPUG00000020857	cpsf2	100	85.642	ENSOCUG00000005713	CPSF2	100	85.642	Oryctolagus_cuniculus
ENSIPUG00000020857	cpsf2	100	84.411	ENSORLG00000011628	cpsf2	100	84.411	Oryzias_latipes
ENSIPUG00000020857	cpsf2	100	89.987	ENSORLG00020016980	cpsf2	100	89.987	Oryzias_latipes_hni
ENSIPUG00000020857	cpsf2	100	89.987	ENSORLG00015011910	cpsf2	100	89.987	Oryzias_latipes_hsok
ENSIPUG00000020857	cpsf2	100	89.734	ENSOMEG00000022876	cpsf2	100	89.734	Oryzias_melastigma
ENSIPUG00000020857	cpsf2	100	82.763	ENSOARG00000012889	CPSF2	100	82.763	Ovis_aries
ENSIPUG00000020857	cpsf2	100	85.642	ENSPPAG00000039666	CPSF2	100	85.642	Pan_paniscus
ENSIPUG00000020857	cpsf2	99	85.623	ENSPPRG00000010869	CPSF2	100	85.623	Panthera_pardus
ENSIPUG00000020857	cpsf2	100	85.642	ENSPTIG00000021202	CPSF2	100	85.642	Panthera_tigris_altaica
ENSIPUG00000020857	cpsf2	100	85.642	ENSPTRG00000006651	CPSF2	100	85.642	Pan_troglodytes
ENSIPUG00000020857	cpsf2	100	85.769	ENSPANG00000017417	CPSF2	100	85.769	Papio_anubis
ENSIPUG00000020857	cpsf2	100	84.498	ENSPKIG00000021453	cpsf2	100	84.498	Paramormyrops_kingsleyae
ENSIPUG00000020857	cpsf2	100	85.896	ENSPSIG00000006289	CPSF2	100	85.896	Pelodiscus_sinensis
ENSIPUG00000020857	cpsf2	76	84.859	ENSPMGG00000002511	cpsf2	99	84.859	Periophthalmus_magnuspinnatus
ENSIPUG00000020857	cpsf2	100	85.260	ENSPEMG00000007917	Cpsf2	100	85.260	Peromyscus_maniculatus_bairdii
ENSIPUG00000020857	cpsf2	100	74.497	ENSPMAG00000006205	cpsf2	100	74.497	Petromyzon_marinus
ENSIPUG00000020857	cpsf2	100	86.023	ENSPCIG00000011393	CPSF2	100	86.023	Phascolarctos_cinereus
ENSIPUG00000020857	cpsf2	100	89.480	ENSPFOG00000018648	cpsf2	100	89.480	Poecilia_formosa
ENSIPUG00000020857	cpsf2	100	89.480	ENSPLAG00000019199	cpsf2	99	89.480	Poecilia_latipinna
ENSIPUG00000020857	cpsf2	96	89.605	ENSPMEG00000012100	cpsf2	100	89.037	Poecilia_mexicana
ENSIPUG00000020857	cpsf2	100	89.100	ENSPREG00000008960	cpsf2	100	89.100	Poecilia_reticulata
ENSIPUG00000020857	cpsf2	64	81.637	ENSPPYG00000029685	-	100	81.637	Pongo_abelii
ENSIPUG00000020857	cpsf2	100	85.515	ENSPCAG00000012477	CPSF2	100	85.515	Procavia_capensis
ENSIPUG00000020857	cpsf2	100	85.769	ENSPCOG00000026387	CPSF2	100	85.769	Propithecus_coquereli
ENSIPUG00000020857	cpsf2	65	91.327	ENSPVAG00000004223	CPSF2	65	91.327	Pteropus_vampyrus
ENSIPUG00000020857	cpsf2	100	89.873	ENSPNYG00000023356	cpsf2	100	89.873	Pundamilia_nyererei
ENSIPUG00000020857	cpsf2	100	95.044	ENSPNAG00000001849	cpsf2	100	95.044	Pygocentrus_nattereri
ENSIPUG00000020857	cpsf2	100	85.260	ENSRNOG00000005733	Cpsf2	100	85.260	Rattus_norvegicus
ENSIPUG00000020857	cpsf2	100	85.769	ENSRBIG00000044792	CPSF2	100	85.769	Rhinopithecus_bieti
ENSIPUG00000020857	cpsf2	100	85.769	ENSRROG00000034875	CPSF2	100	85.769	Rhinopithecus_roxellana
ENSIPUG00000020857	cpsf2	100	85.769	ENSSBOG00000024571	CPSF2	100	85.769	Saimiri_boliviensis_boliviensis
ENSIPUG00000020857	cpsf2	100	85.896	ENSSHAG00000010458	CPSF2	100	85.896	Sarcophilus_harrisii
ENSIPUG00000020857	cpsf2	100	91.105	ENSSFOG00015002117	cpsf2	100	91.105	Scleropages_formosus
ENSIPUG00000020857	cpsf2	100	89.861	ENSSMAG00000002001	cpsf2	100	89.861	Scophthalmus_maximus
ENSIPUG00000020857	cpsf2	100	91.255	ENSSDUG00000004084	cpsf2	100	91.255	Seriola_dumerili
ENSIPUG00000020857	cpsf2	100	90.748	ENSSLDG00000024330	cpsf2	100	90.748	Seriola_lalandi_dorsalis
ENSIPUG00000020857	cpsf2	58	94.059	ENSSARG00000009784	-	63	94.059	Sorex_araneus
ENSIPUG00000020857	cpsf2	100	85.896	ENSSPUG00000013485	CPSF2	100	85.896	Sphenodon_punctatus
ENSIPUG00000020857	cpsf2	100	90.494	ENSSPAG00000013284	cpsf2	100	90.494	Stegastes_partitus
ENSIPUG00000020857	cpsf2	100	85.642	ENSSSCG00000002447	CPSF2	100	85.642	Sus_scrofa
ENSIPUG00000020857	cpsf2	100	85.896	ENSTGUG00000012571	-	100	85.896	Taeniopygia_guttata
ENSIPUG00000020857	cpsf2	100	89.734	ENSTRUG00000003742	cpsf2	100	89.734	Takifugu_rubripes
ENSIPUG00000020857	cpsf2	100	88.243	ENSTNIG00000012228	cpsf2	100	89.254	Tetraodon_nigroviridis
ENSIPUG00000020857	cpsf2	91	83.285	ENSTBEG00000004530	CPSF2	94	83.285	Tupaia_belangeri
ENSIPUG00000020857	cpsf2	88	87.500	ENSTTRG00000008697	CPSF2	88	87.500	Tursiops_truncatus
ENSIPUG00000020857	cpsf2	100	85.769	ENSUAMG00000028071	CPSF2	100	85.769	Ursus_americanus
ENSIPUG00000020857	cpsf2	100	85.769	ENSUMAG00000005029	CPSF2	100	85.769	Ursus_maritimus
ENSIPUG00000020857	cpsf2	99	85.623	ENSVPAG00000003503	CPSF2	100	85.623	Vicugna_pacos
ENSIPUG00000020857	cpsf2	100	85.642	ENSVVUG00000024642	CPSF2	100	85.642	Vulpes_vulpes
ENSIPUG00000020857	cpsf2	100	84.117	ENSXETG00000010289	cpsf2	100	84.117	Xenopus_tropicalis
ENSIPUG00000020857	cpsf2	100	89.480	ENSXCOG00000001764	cpsf2	100	89.480	Xiphophorus_couchianus
ENSIPUG00000020857	cpsf2	100	89.734	ENSXMAG00000017048	cpsf2	100	89.734	Xiphophorus_maculatus