EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000021703 (Gene tree)
Gene ID: 108266436
Gene Symbol: rif1
Alias: fc38c03|si:dkey-89p3.2|wu:fc38c03
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 16742 bases
Position: chr6:11056884-11073625
Accession: 108266436
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000032505	Rif1_N	PF12231.8	5.2e-81	1	1
ENSIPUP00000032540	Rif1_N	PF12231.8	5.2e-81	1	1
ENSIPUP00000032595	Rif1_N	PF12231.8	5.2e-81	1	1
ENSIPUP00000032616	Rif1_N	PF12231.8	1e-80	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000033884	-	7215	-	ENSIPUP00000032595	2404 (aa)	-	-
ENSIPUT00000033905	-	7176	-	ENSIPUP00000032616	2391 (aa)	-	-
ENSIPUT00000033789	-	7589	XM_017469754	ENSIPUP00000032505	2423 (aa)	XP_017325243	A0A2D0R3U2
ENSIPUT00000033826	-	7464	XM_017469753	ENSIPUP00000032540	2423 (aa)	XP_017325242	A0A2D0R3U2

Gene Model

Click here to download ENSIPUG00000021703's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000021703's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000021703	rif1	63	52.606	ENSG00000080345	RIF1	97	56.053	Homo_sapiens
ENSIPUG00000021703	rif1	65	56.640	ENSAPOG00000011073	rif1	60	57.607	Acanthochromis_polyacanthus
ENSIPUG00000021703	rif1	64	51.867	ENSAMEG00000008461	RIF1	63	51.799	Ailuropoda_melanoleuca
ENSIPUG00000021703	rif1	70	62.612	ENSACIG00000017765	rif1	72	64.944	Amphilophus_citrinellus
ENSIPUG00000021703	rif1	78	59.055	ENSAOCG00000017231	rif1	76	59.055	Amphiprion_ocellaris
ENSIPUG00000021703	rif1	60	67.128	ENSAPEG00000013228	rif1	63	64.072	Amphiprion_percula
ENSIPUG00000021703	rif1	85	62.466	ENSATEG00000022887	rif1	78	62.466	Anabas_testudineus
ENSIPUG00000021703	rif1	82	51.997	ENSAPLG00000007092	RIF1	88	52.149	Anas_platyrhynchos
ENSIPUG00000021703	rif1	52	50.974	ENSACAG00000003714	RIF1	52	51.397	Anolis_carolinensis
ENSIPUG00000021703	rif1	64	52.492	ENSANAG00000024840	RIF1	62	52.427	Aotus_nancymaae
ENSIPUG00000021703	rif1	99	66.253	ENSAMXG00000010910	rif1	99	65.986	Astyanax_mexicanus
ENSIPUG00000021703	rif1	59	50.450	ENSBTAG00000021020	RIF1	63	51.097	Bos_taurus
ENSIPUG00000021703	rif1	50	52.814	ENSCJAG00000003138	RIF1	50	52.994	Callithrix_jacchus
ENSIPUG00000021703	rif1	53	49.885	ENSCAFG00020016401	RIF1	50	51.459	Canis_lupus_dingo
ENSIPUG00000021703	rif1	50	52.534	ENSCHIG00000020327	RIF1	50	52.470	Capra_hircus
ENSIPUG00000021703	rif1	56	42.541	ENSCAPG00000008957	RIF1	65	43.296	Cavia_aperea
ENSIPUG00000021703	rif1	64	50.122	ENSCPOG00000037898	RIF1	65	50.040	Cavia_porcellus
ENSIPUG00000021703	rif1	63	51.768	ENSCCAG00000024760	RIF1	61	51.768	Cebus_capucinus
ENSIPUG00000021703	rif1	63	52.851	ENSCATG00000033353	RIF1	62	53.032	Cercocebus_atys
ENSIPUG00000021703	rif1	63	52.438	ENSCSAG00000016089	RIF1	62	53.032	Chlorocebus_sabaeus
ENSIPUG00000021703	rif1	68	54.244	ENSCPBG00000025885	RIF1	68	52.965	Chrysemys_picta_bellii
ENSIPUG00000021703	rif1	59	59.031	ENSCANG00000028962	RIF1	61	59.031	Colobus_angolensis_palliatus
ENSIPUG00000021703	rif1	64	49.601	ENSCGRG00001024589	Rif1	64	49.879	Cricetulus_griseus_chok1gshd
ENSIPUG00000021703	rif1	63	51.093	ENSCGRG00000010713	Rif1	64	51.637	Cricetulus_griseus_crigri
ENSIPUG00000021703	rif1	70	73.387	ENSCSEG00000003945	rif1	73	73.387	Cynoglossus_semilaevis
ENSIPUG00000021703	rif1	62	55.135	ENSCVAG00000022479	rif1	62	54.587	Cyprinodon_variegatus
ENSIPUG00000021703	rif1	99	57.137	ENSDARG00000062650	rif1	99	57.063	Danio_rerio
ENSIPUG00000021703	rif1	64	51.270	ENSDNOG00000011194	RIF1	61	51.356	Dasypus_novemcinctus
ENSIPUG00000021703	rif1	64	48.387	ENSETEG00000012421	RIF1	63	48.387	Echinops_telfairi
ENSIPUG00000021703	rif1	57	64.458	ENSEASG00005023434	RIF1	57	64.458	Equus_asinus_asinus
ENSIPUG00000021703	rif1	64	52.869	ENSECAG00000012679	RIF1	71	52.760	Equus_caballus
ENSIPUG00000021703	rif1	69	67.159	ENSELUG00000006826	rif1	68	65.489	Esox_lucius
ENSIPUG00000021703	rif1	53	50.458	ENSFCAG00000029742	RIF1	50	52.080	Felis_catus
ENSIPUG00000021703	rif1	58	53.903	ENSFALG00000013874	RIF1	91	54.294	Ficedula_albicollis
ENSIPUG00000021703	rif1	65	52.181	ENSFDAG00000006538	RIF1	64	52.297	Fukomys_damarensis
ENSIPUG00000021703	rif1	76	56.234	ENSFHEG00000013721	rif1	85	56.321	Fundulus_heteroclitus
ENSIPUG00000021703	rif1	65	59.859	ENSGMOG00000003517	rif1	96	59.859	Gadus_morhua
ENSIPUG00000021703	rif1	58	53.105	ENSGALG00000012484	RIF1	70	53.394	Gallus_gallus
ENSIPUG00000021703	rif1	83	53.955	ENSGAFG00000017196	rif1	76	63.031	Gambusia_affinis
ENSIPUG00000021703	rif1	50	62.815	ENSGACG00000008579	rif1	63	57.153	Gasterosteus_aculeatus
ENSIPUG00000021703	rif1	65	54.034	ENSGAGG00000012595	RIF1	71	54.016	Gopherus_agassizii
ENSIPUG00000021703	rif1	81	58.605	ENSHBUG00000007125	rif1	67	56.722	Haplochromis_burtoni
ENSIPUG00000021703	rif1	59	52.640	ENSHGLG00100009807	RIF1	62	52.791	Heterocephalus_glaber_male
ENSIPUG00000021703	rif1	70	61.027	ENSHCOG00000015943	rif1	59	61.526	Hippocampus_comes
ENSIPUG00000021703	rif1	50	50.040	ENSJJAG00000023000	Rif1	50	50.200	Jaculus_jaculus
ENSIPUG00000021703	rif1	75	55.888	ENSKMAG00000002852	rif1	69	61.213	Kryptolebias_marmoratus
ENSIPUG00000021703	rif1	74	62.832	ENSLBEG00000023196	rif1	69	62.832	Labrus_bergylta
ENSIPUG00000021703	rif1	65	56.352	ENSLACG00000005425	RIF1	66	57.143	Latimeria_chalumnae
ENSIPUG00000021703	rif1	76	65.465	ENSLOCG00000002657	rif1	83	66.066	Lepisosteus_oculatus
ENSIPUG00000021703	rif1	50	52.167	ENSLAFG00000009796	RIF1	50	52.100	Loxodonta_africana
ENSIPUG00000021703	rif1	50	52.851	ENSMLEG00000042945	RIF1	50	53.032	Mandrillus_leucophaeus
ENSIPUG00000021703	rif1	89	54.829	ENSMAMG00000001745	rif1	51	64.843	Mastacembelus_armatus
ENSIPUG00000021703	rif1	76	60.109	ENSMZEG00005020920	rif1	89	60.109	Maylandia_zebra
ENSIPUG00000021703	rif1	63	54.143	ENSMGAG00000012732	RIF1	73	54.501	Meleagris_gallopavo
ENSIPUG00000021703	rif1	50	52.423	ENSMICG00000046127	RIF1	50	53.312	Microcebus_murinus
ENSIPUG00000021703	rif1	78	57.182	ENSMMOG00000006519	rif1	66	62.930	Mola_mola
ENSIPUG00000021703	rif1	66	53.439	ENSMODG00000003703	RIF1	66	53.643	Monodelphis_domestica
ENSIPUG00000021703	rif1	75	64.545	ENSMALG00000016759	rif1	74	64.545	Monopterus_albus
ENSIPUG00000021703	rif1	63	52.581	MGP_CAROLIEiJ_G0023555	Rif1	51	52.435	Mus_caroli
ENSIPUG00000021703	rif1	63	49.355	MGP_PahariEiJ_G0025006	Rif1	62	50.637	Mus_pahari
ENSIPUG00000021703	rif1	56	49.051	ENSMLUG00000003376	RIF1	62	49.149	Myotis_lucifugus
ENSIPUG00000021703	rif1	65	51.518	ENSNGAG00000009268	Rif1	52	51.608	Nannospalax_galili
ENSIPUG00000021703	rif1	72	63.848	ENSNBRG00000014257	rif1	90	63.848	Neolamprologus_brichardi
ENSIPUG00000021703	rif1	50	50.520	ENSODEG00000003950	RIF1	50	50.880	Octodon_degus
ENSIPUG00000021703	rif1	64	61.701	ENSONIG00000013657	rif1	67	65.696	Oreochromis_niloticus
ENSIPUG00000021703	rif1	54	56.900	ENSOANG00000006078	-	55	56.900	Ornithorhynchus_anatinus
ENSIPUG00000021703	rif1	51	51.752	ENSOCUG00000017435	RIF1	50	51.685	Oryctolagus_cuniculus
ENSIPUG00000021703	rif1	74	60.606	ENSORLG00020001302	rif1	67	61.912	Oryzias_latipes_hni
ENSIPUG00000021703	rif1	64	62.229	ENSORLG00015000009	rif1	67	62.358	Oryzias_latipes_hsok
ENSIPUG00000021703	rif1	63	62.337	ENSOMEG00000021513	rif1	67	62.377	Oryzias_melastigma
ENSIPUG00000021703	rif1	50	52.244	ENSOARG00000008930	RIF1	50	52.153	Ovis_aries
ENSIPUG00000021703	rif1	50	52.369	ENSPPAG00000023754	RIF1	50	52.546	Pan_paniscus
ENSIPUG00000021703	rif1	53	50.572	ENSPPRG00000003618	RIF1	50	51.822	Panthera_pardus
ENSIPUG00000021703	rif1	50	52.450	ENSPTRG00000012534	RIF1	50	52.627	Pan_troglodytes
ENSIPUG00000021703	rif1	50	52.851	ENSPANG00000008525	RIF1	62	53.032	Papio_anubis
ENSIPUG00000021703	rif1	90	70.206	ENSPKIG00000004267	rif1	77	70.206	Paramormyrops_kingsleyae
ENSIPUG00000021703	rif1	75	61.465	ENSPMGG00000016141	rif1	98	52.767	Periophthalmus_magnuspinnatus
ENSIPUG00000021703	rif1	73	48.428	ENSPEMG00000000446	Rif1	50	52.099	Peromyscus_maniculatus_bairdii
ENSIPUG00000021703	rif1	65	53.323	ENSPCIG00000009185	RIF1	65	53.365	Phascolarctos_cinereus
ENSIPUG00000021703	rif1	79	57.031	ENSPFOG00000017804	rif1	78	57.834	Poecilia_formosa
ENSIPUG00000021703	rif1	68	56.748	ENSPFOG00000000554	-	76	56.799	Poecilia_formosa
ENSIPUG00000021703	rif1	75	57.445	ENSPLAG00000017945	rif1	73	63.534	Poecilia_latipinna
ENSIPUG00000021703	rif1	65	55.818	ENSPMEG00000006897	-	56	55.674	Poecilia_mexicana
ENSIPUG00000021703	rif1	75	57.687	ENSPREG00000018052	rif1	72	63.061	Poecilia_reticulata
ENSIPUG00000021703	rif1	50	52.205	ENSPCOG00000027888	RIF1	50	52.674	Propithecus_coquereli
ENSIPUG00000021703	rif1	55	59.138	ENSPVAG00000014276	RIF1	56	59.290	Pteropus_vampyrus
ENSIPUG00000021703	rif1	76	59.858	ENSPNYG00000012940	rif1	94	53.561	Pundamilia_nyererei
ENSIPUG00000021703	rif1	99	69.824	ENSPNAG00000016685	rif1	99	69.278	Pygocentrus_nattereri
ENSIPUG00000021703	rif1	62	47.975	ENSRNOG00000054901	Rif1	63	49.684	Rattus_norvegicus
ENSIPUG00000021703	rif1	60	56.977	ENSSBOG00000029530	RIF1	61	56.410	Saimiri_boliviensis_boliviensis
ENSIPUG00000021703	rif1	63	52.438	ENSSHAG00000018552	RIF1	64	52.373	Sarcophilus_harrisii
ENSIPUG00000021703	rif1	77	68.485	ENSSFOG00015021539	rif1	71	68.485	Scleropages_formosus
ENSIPUG00000021703	rif1	74	66.667	ENSSMAG00000011704	rif1	70	66.667	Scophthalmus_maximus
ENSIPUG00000021703	rif1	77	62.500	ENSSDUG00000015632	rif1	88	63.733	Seriola_dumerili
ENSIPUG00000021703	rif1	75	59.149	ENSSLDG00000019531	rif1	78	58.942	Seriola_lalandi_dorsalis
ENSIPUG00000021703	rif1	82	52.887	ENSSPUG00000003062	RIF1	68	53.135	Sphenodon_punctatus
ENSIPUG00000021703	rif1	58	65.663	ENSSPAG00000018359	rif1	80	65.489	Stegastes_partitus
ENSIPUG00000021703	rif1	52	50.775	ENSSSCG00000016395	RIF1	50	52.342	Sus_scrofa
ENSIPUG00000021703	rif1	78	58.203	ENSTRUG00000015808	rif1	85	56.539	Takifugu_rubripes
ENSIPUG00000021703	rif1	71	63.497	ENSTNIG00000011538	rif1	89	63.497	Tetraodon_nigroviridis
ENSIPUG00000021703	rif1	59	54.508	ENSTBEG00000016082	RIF1	58	54.375	Tupaia_belangeri
ENSIPUG00000021703	rif1	50	51.929	ENSTTRG00000011190	RIF1	62	51.942	Tursiops_truncatus
ENSIPUG00000021703	rif1	54	50.604	ENSUAMG00000026385	RIF1	58	50.909	Ursus_americanus
ENSIPUG00000021703	rif1	64	51.652	ENSUMAG00000000337	RIF1	62	51.582	Ursus_maritimus
ENSIPUG00000021703	rif1	64	51.493	ENSVPAG00000002162	RIF1	62	51.419	Vicugna_pacos
ENSIPUG00000021703	rif1	53	50.076	ENSVVUG00000011293	RIF1	50	51.660	Vulpes_vulpes
ENSIPUG00000021703	rif1	55	48.782	ENSXETG00000004530	rif1	52	51.086	Xenopus_tropicalis
ENSIPUG00000021703	rif1	75	54.594	ENSXMAG00000000506	rif1	82	54.639	Xiphophorus_maculatus