EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000022365 (Gene tree)
Gene ID: 108256680
Gene Symbol: rbm42
Alias: mgc10433l|zgc:109907
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 8308 bases
Position: chr23:14043164-14051471
Accession: 108256680
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000033271	RRM_1	PF00076.22	1.5e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000034579	-	2085	XM_017453792	ENSIPUP00000033271	414 (aa)	XP_017309281	A0A2D0PV23

Gene Model

Click here to download ENSIPUG00000022365's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000022365's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000022365	rbm42	99	72.512	ENSAPOG00000015109	rbm42	100	73.634	Acanthochromis_polyacanthus
ENSIPUG00000022365	rbm42	99	69.378	ENSACIG00000010771	rbm42	100	66.207	Amphilophus_citrinellus
ENSIPUG00000022365	rbm42	99	72.512	ENSAOCG00000008873	rbm42	100	73.460	Amphiprion_ocellaris
ENSIPUG00000022365	rbm42	99	72.512	ENSAPEG00000012051	rbm42	99	73.460	Amphiprion_percula
ENSIPUG00000022365	rbm42	99	72.076	ENSATEG00000000536	rbm42	100	73.333	Anabas_testudineus
ENSIPUG00000022365	rbm42	99	73.381	ENSACLG00000004988	rbm42	100	73.141	Astatotilapia_calliptera
ENSIPUG00000022365	rbm42	100	89.639	ENSAMXG00000016545	rbm42	100	89.855	Astyanax_mexicanus
ENSIPUG00000022365	rbm42	97	64.965	ENSCSEG00000010248	rbm42	100	65.972	Cynoglossus_semilaevis
ENSIPUG00000022365	rbm42	99	69.451	ENSCVAG00000015589	rbm42	100	69.070	Cyprinodon_variegatus
ENSIPUG00000022365	rbm42	99	79.710	ENSDARG00000039910	rbm42	100	80.918	Danio_rerio
ENSIPUG00000022365	rbm42	99	79.524	ENSELUG00000022403	rbm42	100	79.048	Esox_lucius
ENSIPUG00000022365	rbm42	53	81.166	ENSFHEG00000006764	rbm42	83	76.707	Fundulus_heteroclitus
ENSIPUG00000022365	rbm42	99	69.690	ENSGMOG00000012660	rbm42	100	71.667	Gadus_morhua
ENSIPUG00000022365	rbm42	75	70.347	ENSGAFG00000009059	rbm42	100	65.465	Gambusia_affinis
ENSIPUG00000022365	rbm42	99	68.496	ENSGACG00000004170	rbm42	100	69.690	Gasterosteus_aculeatus
ENSIPUG00000022365	rbm42	99	73.381	ENSHBUG00000011141	rbm42	100	73.141	Haplochromis_burtoni
ENSIPUG00000022365	rbm42	99	69.524	ENSHCOG00000021214	rbm42	100	68.957	Hippocampus_comes
ENSIPUG00000022365	rbm42	91	65.803	ENSKMAG00000015287	rbm42	100	62.469	Kryptolebias_marmoratus
ENSIPUG00000022365	rbm42	84	66.120	ENSLBEG00000004578	-	96	71.067	Labrus_bergylta
ENSIPUG00000022365	rbm42	99	68.372	ENSLBEG00000017547	rbm42	100	72.619	Labrus_bergylta
ENSIPUG00000022365	rbm42	99	76.190	ENSLOCG00000003368	rbm42	100	77.143	Lepisosteus_oculatus
ENSIPUG00000022365	rbm42	99	71.838	ENSMAMG00000006708	rbm42	100	71.090	Mastacembelus_armatus
ENSIPUG00000022365	rbm42	99	73.381	ENSMZEG00005025234	rbm42	100	73.141	Maylandia_zebra
ENSIPUG00000022365	rbm42	91	70.866	ENSMALG00000015720	rbm42	100	71.654	Monopterus_albus
ENSIPUG00000022365	rbm42	99	73.810	ENSONIG00000008029	rbm42	100	73.223	Oreochromis_niloticus
ENSIPUG00000022365	rbm42	99	59.485	ENSORLG00020022507	rbm42	100	59.535	Oryzias_latipes_hni
ENSIPUG00000022365	rbm42	99	70.192	ENSORLG00015000659	rbm42	100	67.281	Oryzias_latipes_hsok
ENSIPUG00000022365	rbm42	53	82.432	ENSOMEG00000014332	rbm42	84	82.063	Oryzias_melastigma
ENSIPUG00000022365	rbm42	99	82.850	ENSPKIG00000015165	rbm42	100	82.850	Paramormyrops_kingsleyae
ENSIPUG00000022365	rbm42	73	80.214	ENSPMGG00000003569	rbm42	100	94.286	Periophthalmus_magnuspinnatus
ENSIPUG00000022365	rbm42	52	57.848	ENSPMAG00000008633	rbm42	100	49.485	Petromyzon_marinus
ENSIPUG00000022365	rbm42	99	69.928	ENSPFOG00000007701	rbm42	100	70.952	Poecilia_formosa
ENSIPUG00000022365	rbm42	99	69.928	ENSPLAG00000009405	rbm42	100	70.952	Poecilia_latipinna
ENSIPUG00000022365	rbm42	99	69.690	ENSPMEG00000010375	rbm42	100	70.714	Poecilia_mexicana
ENSIPUG00000022365	rbm42	99	69.928	ENSPREG00000018102	rbm42	100	70.952	Poecilia_reticulata
ENSIPUG00000022365	rbm42	99	73.317	ENSPNYG00000014460	rbm42	100	72.727	Pundamilia_nyererei
ENSIPUG00000022365	rbm42	99	87.923	ENSPNAG00000009961	rbm42	100	87.923	Pygocentrus_nattereri
ENSIPUG00000022365	rbm42	99	79.097	ENSSFOG00015019227	rbm42	100	80.523	Scleropages_formosus
ENSIPUG00000022365	rbm42	99	72.143	ENSSMAG00000011935	rbm42	100	71.667	Scophthalmus_maximus
ENSIPUG00000022365	rbm42	99	73.872	ENSSDUG00000004033	rbm42	100	75.355	Seriola_dumerili
ENSIPUG00000022365	rbm42	99	66.986	ENSSLDG00000009918	rbm42	100	94.366	Seriola_lalandi_dorsalis
ENSIPUG00000022365	rbm42	99	72.143	ENSSPAG00000019871	rbm42	100	73.159	Stegastes_partitus
ENSIPUG00000022365	rbm42	99	67.386	ENSTRUG00000024586	-	76	63.014	Takifugu_rubripes
ENSIPUG00000022365	rbm42	99	57.461	ENSTNIG00000011669	rbm42	100	60.129	Tetraodon_nigroviridis
ENSIPUG00000022365	rbm42	99	56.208	ENSXETG00000017599	rbm42	100	57.047	Xenopus_tropicalis
ENSIPUG00000022365	rbm42	99	70.167	ENSXMAG00000012827	rbm42	100	67.431	Xiphophorus_maculatus