EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000022440 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 5776 bases
Position: chr15:4502593-4508368
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000033384	RRM_1	PF00076.22	2.4e-34	1	2
ENSIPUP00000033384	RRM_1	PF00076.22	2.4e-34	2	2
ENSIPUP00000033392	RRM_1	PF00076.22	7.5e-31	1	2
ENSIPUP00000033392	RRM_1	PF00076.22	7.5e-31	2	2
ENSIPUP00000033402	RRM_1	PF00076.22	1.5e-23	1	2
ENSIPUP00000033402	RRM_1	PF00076.22	1.5e-23	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000034711	-	744	-	ENSIPUP00000033402	247 (aa)	-	-
ENSIPUT00000034701	-	702	-	ENSIPUP00000033392	233 (aa)	-	-
ENSIPUT00000034693	-	816	-	ENSIPUP00000033384	271 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000022440's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000022440's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000022440	-	83	30.357	ENSIPUG00000004992	tardbp	60	31.395
ENSIPUG00000022440	-	88	38.235	ENSIPUG00000003732	msi2b	52	42.391
ENSIPUG00000022440	-	80	37.838	ENSIPUG00000006899	dazap1	58	37.838
ENSIPUG00000022440	-	71	59.639	ENSIPUG00000001991	-	76	60.112
ENSIPUG00000022440	-	79	81.967	ENSIPUG00000019815	RO32	54	82.778
ENSIPUG00000022440	-	70	38.272	ENSIPUG00000020220	hnrnpab	56	38.095
ENSIPUG00000022440	-	92	37.200	ENSIPUG00000021097	msi2a	61	39.560
ENSIPUG00000022440	-	55	47.368	ENSIPUG00000007089	RBM3	63	49.296
ENSIPUG00000022440	-	75	79.310	ENSIPUG00000002023	hnrnpa1a	75	79.444
ENSIPUG00000022440	-	79	95.135	ENSIPUG00000022432	hnrnpa1b	69	96.000
ENSIPUG00000022440	-	72	38.667	ENSIPUG00000024951	hnrnpdl	60	38.667
ENSIPUG00000022440	-	70	41.358	ENSIPUG00000024954	hnrnpd	60	40.838
ENSIPUG00000022440	-	72	41.379	ENSIPUG00000001976	msi1	56	37.791

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000022440	-	74	84.393	ENSAPOG00000019369	-	59	84.021	Acanthochromis_polyacanthus
ENSIPUG00000022440	-	72	57.229	ENSACIG00000021815	-	90	56.216	Amphilophus_citrinellus
ENSIPUG00000022440	-	74	84.393	ENSAOCG00000005289	-	58	84.021	Amphiprion_ocellaris
ENSIPUG00000022440	-	74	84.393	ENSAPEG00000004179	-	58	84.021	Amphiprion_percula
ENSIPUG00000022440	-	70	60.274	ENSATEG00000003423	-	75	60.377	Anabas_testudineus
ENSIPUG00000022440	-	74	82.659	ENSATEG00000022918	hnrnpa1a	89	84.127	Anabas_testudineus
ENSIPUG00000022440	-	83	55.488	ENSACAG00000017109	-	64	54.438	Anolis_carolinensis
ENSIPUG00000022440	-	72	85.030	ENSACLG00000006940	-	56	85.561	Astatotilapia_calliptera
ENSIPUG00000022440	-	70	59.146	ENSAMXG00000037730	-	55	56.989	Astyanax_mexicanus
ENSIPUG00000022440	-	73	88.757	ENSAMXG00000006296	hnrnpa1a	51	87.302	Astyanax_mexicanus
ENSIPUG00000022440	-	75	80.571	ENSCSEG00000007589	hnrnpa1a	70	83.069	Cynoglossus_semilaevis
ENSIPUG00000022440	-	70	55.280	ENSCSEG00000014051	-	71	55.747	Cynoglossus_semilaevis
ENSIPUG00000022440	-	71	85.542	ENSCVAG00000012637	hnrnpa1a	57	84.021	Cyprinodon_variegatus
ENSIPUG00000022440	-	73	77.647	ENSDARG00000011020	hnrnpa1a	51	76.263	Danio_rerio
ENSIPUG00000022440	-	76	53.039	ENSDORG00000026425	-	51	56.983	Dipodomys_ordii
ENSIPUG00000022440	-	74	82.081	ENSELUG00000007372	-	53	83.598	Esox_lucius
ENSIPUG00000022440	-	73	82.249	ENSGMOG00000017950	hnrnpa1a	50	83.243	Gadus_morhua
ENSIPUG00000022440	-	70	60.123	ENSGMOG00000020353	-	92	59.887	Gadus_morhua
ENSIPUG00000022440	-	74	84.393	ENSGAFG00000007751	-	57	84.021	Gambusia_affinis
ENSIPUG00000022440	-	72	57.055	ENSGAFG00000016803	-	56	54.839	Gambusia_affinis
ENSIPUG00000022440	-	72	83.234	ENSGACG00000009435	-	50	81.538	Gasterosteus_aculeatus
ENSIPUG00000022440	-	72	85.030	ENSHBUG00000005647	hnrnpa1a	56	85.561	Haplochromis_burtoni
ENSIPUG00000022440	-	71	86.145	ENSKMAG00000020859	-	59	83.333	Kryptolebias_marmoratus
ENSIPUG00000022440	-	72	83.832	ENSLBEG00000010010	hnrnpa1a	59	78.049	Labrus_bergylta
ENSIPUG00000022440	-	77	71.351	ENSMFAG00000028351	-	56	70.312	Macaca_fascicularis
ENSIPUG00000022440	-	75	82.857	ENSMAMG00000007606	-	58	82.653	Mastacembelus_armatus
ENSIPUG00000022440	-	72	85.030	ENSMZEG00005027173	hnrnpa1a	56	85.561	Maylandia_zebra
ENSIPUG00000022440	-	74	81.977	ENSMMOG00000008251	hnrnpa1a	80	81.959	Mola_mola
ENSIPUG00000022440	-	75	82.857	ENSMALG00000014091	hnrnpa1a	57	82.653	Monopterus_albus
ENSIPUG00000022440	-	72	57.055	ENSMALG00000008886	-	85	57.143	Monopterus_albus
ENSIPUG00000022440	-	82	54.974	ENSNBRG00000014469	-	82	59.659	Neolamprologus_brichardi
ENSIPUG00000022440	-	72	85.030	ENSNBRG00000018441	-	56	85.561	Neolamprologus_brichardi
ENSIPUG00000022440	-	78	54.335	ENSORLG00000029240	-	94	53.374	Oryzias_latipes
ENSIPUG00000022440	-	71	86.061	ENSORLG00000008001	-	59	84.021	Oryzias_latipes
ENSIPUG00000022440	-	71	86.061	ENSORLG00020006582	hnrnpa1a	87	84.492	Oryzias_latipes_hni
ENSIPUG00000022440	-	74	52.761	ENSORLG00020022498	-	89	53.757	Oryzias_latipes_hni
ENSIPUG00000022440	-	72	52.273	ENSORLG00020006043	-	61	52.273	Oryzias_latipes_hni
ENSIPUG00000022440	-	72	85.030	ENSORLG00015022294	-	59	84.021	Oryzias_latipes_hsok
ENSIPUG00000022440	-	72	85.030	ENSOMEG00000015959	-	59	84.021	Oryzias_melastigma
ENSIPUG00000022440	-	75	81.188	ENSPMGG00000011804	hnrnpa1a	74	81.281	Periophthalmus_magnuspinnatus
ENSIPUG00000022440	-	82	50.711	ENSPMGG00000016392	-	98	50.711	Periophthalmus_magnuspinnatus
ENSIPUG00000022440	-	74	84.393	ENSPFOG00000001825	-	57	84.021	Poecilia_formosa
ENSIPUG00000022440	-	74	84.393	ENSPMEG00000002425	-	57	84.021	Poecilia_mexicana
ENSIPUG00000022440	-	70	59.509	ENSPNYG00000020729	-	90	59.659	Pundamilia_nyererei
ENSIPUG00000022440	-	74	77.907	ENSPNAG00000007752	hnrnpa1a	77	78.756	Pygocentrus_nattereri
ENSIPUG00000022440	-	76	89.266	ENSPNAG00000021630	-	60	89.266	Pygocentrus_nattereri
ENSIPUG00000022440	-	72	82.635	ENSSMAG00000004641	hnrnpa1a	69	76.777	Scophthalmus_maximus
ENSIPUG00000022440	-	70	56.442	ENSSMAG00000010246	-	82	53.757	Scophthalmus_maximus
ENSIPUG00000022440	-	70	58.170	ENSSMAG00000010279	-	93	58.434	Scophthalmus_maximus
ENSIPUG00000022440	-	86	74.500	ENSSDUG00000013908	hnrnpa1a	86	84.783	Seriola_dumerili
ENSIPUG00000022440	-	76	55.191	ENSSDUG00000002431	-	92	55.670	Seriola_dumerili
ENSIPUG00000022440	-	74	83.815	ENSSLDG00000003718	hnrnpa1a	82	83.815	Seriola_lalandi_dorsalis
ENSIPUG00000022440	-	76	83.051	ENSSPAG00000018518	-	60	83.673	Stegastes_partitus
ENSIPUG00000022440	-	76	78.771	ENSTRUG00000020491	-	61	79.000	Takifugu_rubripes
ENSIPUG00000022440	-	70	60.976	ENSTNIG00000007398	-	68	61.017	Tetraodon_nigroviridis
ENSIPUG00000022440	-	73	84.615	ENSXCOG00000009001	-	84	84.021	Xiphophorus_couchianus
ENSIPUG00000022440	-	74	84.393	ENSXMAG00000008076	-	57	84.021	Xiphophorus_maculatus