EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000022767 (Gene tree)
Gene ID: 108272950
Gene Symbol: tnrc6c2
Alias: si:dkey-10p5.9
Full Name: trinucleotide repeat-containing gene 6C protein-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 12686 bases
Position: chr12:11700771-11713456
Accession: 108272950
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000033885	Ago_hook	PF10427.9	4.5e-05	1	1
ENSIPUP00000033885	RRM_1	PF00076.22	5.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000035214	-	4658	XM_017481842	ENSIPUP00000033885	1486 (aa)	XP_017337331	A0A2D0S4H1

Gene Model

Click here to download ENSIPUG00000022767's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000022767's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000022767	tnrc6c2	100	54.395	ENSIPUG00000000818	tnrc6c1	90	55.494
ENSIPUG00000022767	tnrc6c2	59	34.551	ENSIPUG00000001515	tnrc6b	55	34.226

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000022767	tnrc6c2	100	52.550	ENSAOCG00000017648	tnrc6c2	87	54.762	Amphiprion_ocellaris
ENSIPUG00000022767	tnrc6c2	99	51.035	ENSATEG00000003656	tnrc6c2	100	53.407	Anabas_testudineus
ENSIPUG00000022767	tnrc6c2	100	52.270	ENSACLG00000006469	tnrc6c2	88	54.339	Astatotilapia_calliptera
ENSIPUG00000022767	tnrc6c2	100	68.048	ENSAMXG00000009579	tnrc6c2	100	68.981	Astyanax_mexicanus
ENSIPUG00000022767	tnrc6c2	99	61.037	ENSDARG00000103851	tnrc6c2	100	60.949	Danio_rerio
ENSIPUG00000022767	tnrc6c2	95	45.810	ENSELUG00000008149	-	94	47.721	Esox_lucius
ENSIPUG00000022767	tnrc6c2	100	49.591	ENSELUG00000007206	tnrc6c2	100	51.235	Esox_lucius
ENSIPUG00000022767	tnrc6c2	100	52.980	ENSFHEG00000003901	tnrc6c2	100	54.310	Fundulus_heteroclitus
ENSIPUG00000022767	tnrc6c2	100	49.940	ENSGACG00000019401	tnrc6c2	90	51.090	Gasterosteus_aculeatus
ENSIPUG00000022767	tnrc6c2	100	52.330	ENSHBUG00000018310	tnrc6c2	88	54.399	Haplochromis_burtoni
ENSIPUG00000022767	tnrc6c2	100	50.767	ENSHCOG00000017802	tnrc6c2	87	52.070	Hippocampus_comes
ENSIPUG00000022767	tnrc6c2	99	53.393	ENSMAMG00000001718	tnrc6c2	100	55.616	Mastacembelus_armatus
ENSIPUG00000022767	tnrc6c2	100	52.330	ENSMZEG00005023905	tnrc6c2	88	54.399	Maylandia_zebra
ENSIPUG00000022767	tnrc6c2	99	52.476	ENSMALG00000020932	tnrc6c2	100	54.741	Monopterus_albus
ENSIPUG00000022767	tnrc6c2	99	51.325	ENSNBRG00000000452	tnrc6c2	100	53.127	Neolamprologus_brichardi
ENSIPUG00000022767	tnrc6c2	93	52.553	ENSONIG00000018123	tnrc6c2	99	54.322	Oreochromis_niloticus
ENSIPUG00000022767	tnrc6c2	100	52.058	ENSORLG00000003327	tnrc6c2	87	53.563	Oryzias_latipes
ENSIPUG00000022767	tnrc6c2	100	51.903	ENSORLG00020010730	tnrc6c2	87	53.353	Oryzias_latipes_hni
ENSIPUG00000022767	tnrc6c2	100	52.372	ENSORLG00015009232	tnrc6c2	87	53.502	Oryzias_latipes_hsok
ENSIPUG00000022767	tnrc6c2	100	52.232	ENSOMEG00000017952	tnrc6c2	87	53.619	Oryzias_melastigma
ENSIPUG00000022767	tnrc6c2	99	47.790	ENSPFOG00000011590	tnrc6c2	90	48.789	Poecilia_formosa
ENSIPUG00000022767	tnrc6c2	99	50.983	ENSPLAG00000006992	tnrc6c2	100	52.746	Poecilia_latipinna
ENSIPUG00000022767	tnrc6c2	100	52.622	ENSPMEG00000012946	tnrc6c2	100	52.508	Poecilia_mexicana
ENSIPUG00000022767	tnrc6c2	99	51.446	ENSPREG00000015823	tnrc6c2	100	53.077	Poecilia_reticulata
ENSIPUG00000022767	tnrc6c2	99	52.418	ENSPNYG00000002582	tnrc6c2	100	54.306	Pundamilia_nyererei
ENSIPUG00000022767	tnrc6c2	100	69.853	ENSPNAG00000026838	tnrc6c2	100	70.772	Pygocentrus_nattereri
ENSIPUG00000022767	tnrc6c2	99	52.151	ENSSMAG00000015145	tnrc6c2	100	53.832	Scophthalmus_maximus
ENSIPUG00000022767	tnrc6c2	99	53.317	ENSSDUG00000020741	tnrc6c2	100	55.769	Seriola_dumerili
ENSIPUG00000022767	tnrc6c2	99	53.198	ENSSLDG00000002077	tnrc6c2	100	55.649	Seriola_lalandi_dorsalis
ENSIPUG00000022767	tnrc6c2	100	52.872	ENSSPAG00000013052	tnrc6c2	87	54.513	Stegastes_partitus
ENSIPUG00000022767	tnrc6c2	92	59.368	ENSTNIG00000004178	tnrc6c2	92	59.477	Tetraodon_nigroviridis
ENSIPUG00000022767	tnrc6c2	99	50.713	ENSXCOG00000013252	tnrc6c2	100	52.335	Xiphophorus_couchianus
ENSIPUG00000022767	tnrc6c2	99	52.231	ENSXMAG00000006739	tnrc6c2	100	54.134	Xiphophorus_maculatus