EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000023060 (Gene tree)
Gene ID: 108258173
Gene Symbol: rnaseh1
Alias: zgc:91971
Full Name: ribonuclease H1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 9846 bases
Position: chr25:17616597-17626442
Accession: 108258173
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000034354	RNase_H	PF00075.24	2.1e-44	1	1
ENSIPUP00000034348	RNase_H	PF00075.24	2.5e-44	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000035697	-	5741	XM_017456638	ENSIPUP00000034354	258 (aa)	XP_017312127	A0A2D0Q058
ENSIPUT00000035690	-	5836	XM_017456637	ENSIPUP00000034348	279 (aa)	XP_017312126	W5UCL2

Gene Model

Click here to download ENSIPUG00000023060's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03030	DNA replication	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000023060's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000023060	rnaseh1	97	56.371	ENSG00000171865	RNASEH1	91	56.371	Homo_sapiens
ENSIPUG00000023060	rnaseh1	98	62.362	ENSAPOG00000000412	rnaseh1	98	60.678	Acanthochromis_polyacanthus
ENSIPUG00000023060	rnaseh1	98	56.202	ENSAMEG00000018433	RNASEH1	99	54.035	Ailuropoda_melanoleuca
ENSIPUG00000023060	rnaseh1	98	64.394	ENSACIG00000014666	rnaseh1	96	61.458	Amphilophus_citrinellus
ENSIPUG00000023060	rnaseh1	98	62.593	ENSAOCG00000015210	rnaseh1	97	60.884	Amphiprion_ocellaris
ENSIPUG00000023060	rnaseh1	98	62.963	ENSAPEG00000014104	rnaseh1	97	61.224	Amphiprion_percula
ENSIPUG00000023060	rnaseh1	98	61.852	ENSATEG00000000598	rnaseh1	95	61.852	Anabas_testudineus
ENSIPUG00000023060	rnaseh1	92	54.826	ENSAPLG00000001961	RNASEH1	100	54.826	Anas_platyrhynchos
ENSIPUG00000023060	rnaseh1	97	50.508	ENSACAG00000016857	rnaseh1	91	50.508	Anolis_carolinensis
ENSIPUG00000023060	rnaseh1	97	58.301	ENSANAG00000024055	RNASEH1	91	58.301	Aotus_nancymaae
ENSIPUG00000023060	rnaseh1	98	59.636	ENSACLG00000006741	rnaseh1	96	57.525	Astatotilapia_calliptera
ENSIPUG00000023060	rnaseh1	99	63.177	ENSAMXG00000042940	rnaseh1	98	63.177	Astyanax_mexicanus
ENSIPUG00000023060	rnaseh1	97	59.144	ENSBTAG00000016235	RNASEH1	92	59.144	Bos_taurus
ENSIPUG00000023060	rnaseh1	98	39.844	WBGene00004382	rnh-1.0	97	39.844	Caenorhabditis_elegans
ENSIPUG00000023060	rnaseh1	97	57.414	ENSCJAG00000035450	RNASEH1	91	57.414	Callithrix_jacchus
ENSIPUG00000023060	rnaseh1	98	57.364	ENSCAFG00000003259	RNASEH1	98	54.804	Canis_familiaris
ENSIPUG00000023060	rnaseh1	58	68.456	ENSCAFG00020004994	RNASEH1	96	68.456	Canis_lupus_dingo
ENSIPUG00000023060	rnaseh1	97	57.529	ENSCHIG00000022264	-	99	54.386	Capra_hircus
ENSIPUG00000023060	rnaseh1	88	45.148	ENSCHIG00000022230	-	99	45.148	Capra_hircus
ENSIPUG00000023060	rnaseh1	97	58.015	ENSTSYG00000012926	RNASEH1	90	58.015	Carlito_syrichta
ENSIPUG00000023060	rnaseh1	90	62.500	ENSCAPG00000004813	RNASEH1	99	62.500	Cavia_aperea
ENSIPUG00000023060	rnaseh1	97	62.016	ENSCPOG00000022278	Rnaseh1	87	62.016	Cavia_porcellus
ENSIPUG00000023060	rnaseh1	97	57.854	ENSCCAG00000038017	RNASEH1	91	57.854	Cebus_capucinus
ENSIPUG00000023060	rnaseh1	97	57.308	ENSCATG00000016515	-	96	55.636	Cercocebus_atys
ENSIPUG00000023060	rnaseh1	98	51.953	ENSCATG00000016818	-	91	51.953	Cercocebus_atys
ENSIPUG00000023060	rnaseh1	96	61.024	ENSCLAG00000002440	RNASEH1	89	61.024	Chinchilla_lanigera
ENSIPUG00000023060	rnaseh1	97	55.985	ENSCSAG00000006943	RNASEH1	97	54.348	Chlorocebus_sabaeus
ENSIPUG00000023060	rnaseh1	59	67.974	ENSCHOG00000008547	RNASEH1	75	67.974	Choloepus_hoffmanni
ENSIPUG00000023060	rnaseh1	97	54.815	ENSCPBG00000021620	RNASEH1	99	54.647	Chrysemys_picta_bellii
ENSIPUG00000023060	rnaseh1	97	40.659	ENSCING00000014054	-	96	39.860	Ciona_intestinalis
ENSIPUG00000023060	rnaseh1	81	37.118	ENSCSAVG00000000009	-	96	37.118	Ciona_savignyi
ENSIPUG00000023060	rnaseh1	97	56.154	ENSCANG00000037763	RNASEH1	97	54.513	Colobus_angolensis_palliatus
ENSIPUG00000023060	rnaseh1	96	59.216	ENSCGRG00001008950	Rnaseh1	93	57.401	Cricetulus_griseus_chok1gshd
ENSIPUG00000023060	rnaseh1	96	59.216	ENSCGRG00000006029	Rnaseh1	93	57.401	Cricetulus_griseus_crigri
ENSIPUG00000023060	rnaseh1	98	61.811	ENSCSEG00000005741	rnaseh1	95	59.011	Cynoglossus_semilaevis
ENSIPUG00000023060	rnaseh1	98	62.222	ENSCVAG00000018717	rnaseh1	97	59.184	Cyprinodon_variegatus
ENSIPUG00000023060	rnaseh1	99	65.328	ENSDARG00000042571	rnaseh1	99	65.328	Danio_rerio
ENSIPUG00000023060	rnaseh1	97	56.923	ENSDNOG00000016056	RNASEH1	90	56.923	Dasypus_novemcinctus
ENSIPUG00000023060	rnaseh1	96	55.512	ENSDORG00000000704	Rnaseh1	95	55.147	Dipodomys_ordii
ENSIPUG00000023060	rnaseh1	96	37.500	FBgn0023171	rnh1	92	37.500	Drosophila_melanogaster
ENSIPUG00000023060	rnaseh1	99	52.962	ENSETEG00000012674	RNASEH1	99	52.962	Echinops_telfairi
ENSIPUG00000023060	rnaseh1	96	46.367	ENSEBUG00000008898	rnaseh1	98	46.367	Eptatretus_burgeri
ENSIPUG00000023060	rnaseh1	97	46.875	ENSEBUG00000006116	rnaseh1	79	46.875	Eptatretus_burgeri
ENSIPUG00000023060	rnaseh1	98	57.308	ENSEASG00005022200	RNASEH1	98	55.401	Equus_asinus_asinus
ENSIPUG00000023060	rnaseh1	98	57.308	ENSECAG00000020695	RNASEH1	98	55.401	Equus_caballus
ENSIPUG00000023060	rnaseh1	98	63.603	ENSELUG00000010112	rnaseh1	99	61.824	Esox_lucius
ENSIPUG00000023060	rnaseh1	99	53.716	ENSFCAG00000025832	RNASEH1	99	53.716	Felis_catus
ENSIPUG00000023060	rnaseh1	99	54.610	ENSFALG00000002069	RNASEH1	95	54.610	Ficedula_albicollis
ENSIPUG00000023060	rnaseh1	96	59.843	ENSFDAG00000002035	RNASEH1	79	59.843	Fukomys_damarensis
ENSIPUG00000023060	rnaseh1	51	75.510	ENSFHEG00000019613	rnaseh1	65	75.510	Fundulus_heteroclitus
ENSIPUG00000023060	rnaseh1	99	62.548	ENSGMOG00000013818	rnaseh1	99	60.000	Gadus_morhua
ENSIPUG00000023060	rnaseh1	100	55.914	ENSGALG00000016389	RNASEH1	95	55.914	Gallus_gallus
ENSIPUG00000023060	rnaseh1	99	61.679	ENSGAFG00000001776	rnaseh1	100	58.389	Gambusia_affinis
ENSIPUG00000023060	rnaseh1	98	61.654	ENSGACG00000011935	rnaseh1	98	59.589	Gasterosteus_aculeatus
ENSIPUG00000023060	rnaseh1	97	56.089	ENSGAGG00000009150	RNASEH1	62	55.720	Gopherus_agassizii
ENSIPUG00000023060	rnaseh1	97	54.613	ENSGGOG00000034822	RNASEH1	91	54.613	Gorilla_gorilla
ENSIPUG00000023060	rnaseh1	98	59.636	ENSHBUG00000004666	rnaseh1	96	57.525	Haplochromis_burtoni
ENSIPUG00000023060	rnaseh1	96	61.417	ENSHGLG00000002585	Rnaseh1	91	57.295	Heterocephalus_glaber_female
ENSIPUG00000023060	rnaseh1	96	61.417	ENSHGLG00100005105	Rnaseh1	91	57.295	Heterocephalus_glaber_male
ENSIPUG00000023060	rnaseh1	98	59.926	ENSHCOG00000012329	rnaseh1	98	58.054	Hippocampus_comes
ENSIPUG00000023060	rnaseh1	97	59.302	ENSSTOG00000012774	RNASEH1	92	59.302	Ictidomys_tridecemlineatus
ENSIPUG00000023060	rnaseh1	87	57.511	ENSJJAG00000020238	Rnaseh1	96	55.253	Jaculus_jaculus
ENSIPUG00000023060	rnaseh1	94	50.000	ENSJJAG00000008994	-	89	50.000	Jaculus_jaculus
ENSIPUG00000023060	rnaseh1	97	54.231	ENSJJAG00000021481	-	93	53.069	Jaculus_jaculus
ENSIPUG00000023060	rnaseh1	98	61.278	ENSKMAG00000001373	rnaseh1	90	61.278	Kryptolebias_marmoratus
ENSIPUG00000023060	rnaseh1	98	62.595	ENSLBEG00000004480	rnaseh1	97	62.595	Labrus_bergylta
ENSIPUG00000023060	rnaseh1	99	54.093	ENSLACG00000007100	RNASEH1	91	54.093	Latimeria_chalumnae
ENSIPUG00000023060	rnaseh1	98	60.219	ENSLOCG00000017212	rnaseh1	99	61.679	Lepisosteus_oculatus
ENSIPUG00000023060	rnaseh1	97	56.154	ENSLAFG00000015091	RNASEH1	99	53.472	Loxodonta_africana
ENSIPUG00000023060	rnaseh1	97	54.150	ENSMFAG00000002323	-	95	52.399	Macaca_fascicularis
ENSIPUG00000023060	rnaseh1	96	57.031	ENSMFAG00000000063	-	95	55.311	Macaca_fascicularis
ENSIPUG00000023060	rnaseh1	97	54.150	ENSMMUG00000019280	-	92	53.232	Macaca_mulatta
ENSIPUG00000023060	rnaseh1	96	57.422	ENSMNEG00000040183	-	95	55.678	Macaca_nemestrina
ENSIPUG00000023060	rnaseh1	97	51.938	ENSMNEG00000029676	-	92	51.119	Macaca_nemestrina
ENSIPUG00000023060	rnaseh1	89	57.384	ENSMLEG00000039352	-	98	57.384	Mandrillus_leucophaeus
ENSIPUG00000023060	rnaseh1	97	55.952	ENSMLEG00000028662	-	92	54.962	Mandrillus_leucophaeus
ENSIPUG00000023060	rnaseh1	98	61.852	ENSMAMG00000019725	rnaseh1	95	61.852	Mastacembelus_armatus
ENSIPUG00000023060	rnaseh1	98	59.636	ENSMZEG00005013006	rnaseh1	96	57.525	Maylandia_zebra
ENSIPUG00000023060	rnaseh1	86	55.918	ENSMGAG00000013979	RNASEH1	99	55.918	Meleagris_gallopavo
ENSIPUG00000023060	rnaseh1	97	57.795	ENSMAUG00000014957	Rnaseh1	94	56.071	Mesocricetus_auratus
ENSIPUG00000023060	rnaseh1	97	60.465	ENSMICG00000033156	RNASEH1	99	57.544	Microcebus_murinus
ENSIPUG00000023060	rnaseh1	97	56.767	ENSMOCG00000015522	Rnaseh1	99	54.209	Microtus_ochrogaster
ENSIPUG00000023060	rnaseh1	99	61.710	ENSMMOG00000015902	rnaseh1	97	60.274	Mola_mola
ENSIPUG00000023060	rnaseh1	97	58.594	ENSMODG00000014491	-	90	58.594	Monodelphis_domestica
ENSIPUG00000023060	rnaseh1	85	51.770	ENSMODG00000028814	-	92	52.212	Monodelphis_domestica
ENSIPUG00000023060	rnaseh1	98	60.870	ENSMALG00000010565	rnaseh1	97	57.040	Monopterus_albus
ENSIPUG00000023060	rnaseh1	97	59.470	MGP_CAROLIEiJ_G0017660	Rnaseh1	95	57.692	Mus_caroli
ENSIPUG00000023060	rnaseh1	97	59.470	ENSMUSG00000020630	Rnaseh1	95	57.692	Mus_musculus
ENSIPUG00000023060	rnaseh1	97	58.301	MGP_PahariEiJ_G0029418	Rnaseh1	94	58.007	Mus_pahari
ENSIPUG00000023060	rnaseh1	97	58.935	MGP_SPRETEiJ_G0018502	Rnaseh1	95	57.193	Mus_spretus
ENSIPUG00000023060	rnaseh1	60	67.097	ENSMPUG00000012984	RNASEH1	75	67.097	Mustela_putorius_furo
ENSIPUG00000023060	rnaseh1	97	56.604	ENSNGAG00000015966	Rnaseh1	89	55.357	Nannospalax_galili
ENSIPUG00000023060	rnaseh1	98	59.636	ENSNBRG00000008739	rnaseh1	96	57.525	Neolamprologus_brichardi
ENSIPUG00000023060	rnaseh1	90	51.915	ENSNLEG00000000059	-	90	51.915	Nomascus_leucogenys
ENSIPUG00000023060	rnaseh1	96	49.416	ENSNLEG00000015400	RNASEH1	89	48.872	Nomascus_leucogenys
ENSIPUG00000023060	rnaseh1	97	38.889	ENSMEUG00000003610	-	90	38.889	Notamacropus_eugenii
ENSIPUG00000023060	rnaseh1	97	56.489	ENSOPRG00000005072	RNASEH1	90	56.489	Ochotona_princeps
ENSIPUG00000023060	rnaseh1	96	60.474	ENSODEG00000000235	Rnaseh1	86	60.474	Octodon_degus
ENSIPUG00000023060	rnaseh1	98	60.000	ENSONIG00000018697	rnaseh1	99	60.000	Oreochromis_niloticus
ENSIPUG00000023060	rnaseh1	97	58.077	ENSOCUG00000006117	RNASEH1	94	56.318	Oryctolagus_cuniculus
ENSIPUG00000023060	rnaseh1	98	60.000	ENSORLG00000018127	rnaseh1	96	61.654	Oryzias_latipes
ENSIPUG00000023060	rnaseh1	98	60.000	ENSORLG00020013660	rnaseh1	97	58.621	Oryzias_latipes_hni
ENSIPUG00000023060	rnaseh1	98	59.623	ENSORLG00015011338	rnaseh1	97	58.276	Oryzias_latipes_hsok
ENSIPUG00000023060	rnaseh1	88	61.250	ENSOMEG00000004710	rnaseh1	99	58.712	Oryzias_melastigma
ENSIPUG00000023060	rnaseh1	96	58.846	ENSOGAG00000017176	RNASEH1	98	55.749	Otolemur_garnettii
ENSIPUG00000023060	rnaseh1	99	47.959	ENSOARG00000005386	RNASEH1	99	47.959	Ovis_aries
ENSIPUG00000023060	rnaseh1	97	56.371	ENSPPAG00000034221	RNASEH1	91	56.371	Pan_paniscus
ENSIPUG00000023060	rnaseh1	99	53.378	ENSPPRG00000015513	RNASEH1	99	53.378	Panthera_pardus
ENSIPUG00000023060	rnaseh1	90	54.800	ENSPTIG00000019034	RNASEH1	84	54.800	Panthera_tigris_altaica
ENSIPUG00000023060	rnaseh1	97	56.371	ENSPTRG00000011614	RNASEH1	91	56.371	Pan_troglodytes
ENSIPUG00000023060	rnaseh1	88	51.667	ENSPTRG00000043403	-	94	50.397	Pan_troglodytes
ENSIPUG00000023060	rnaseh1	97	55.985	ENSPANG00000000443	RNASEH1	97	57.322	Papio_anubis
ENSIPUG00000023060	rnaseh1	97	53.175	ENSPANG00000018246	-	92	52.290	Papio_anubis
ENSIPUG00000023060	rnaseh1	99	58.824	ENSPKIG00000003146	rnaseh1	99	59.851	Paramormyrops_kingsleyae
ENSIPUG00000023060	rnaseh1	97	55.390	ENSPSIG00000002937	RNASEH1	99	55.390	Pelodiscus_sinensis
ENSIPUG00000023060	rnaseh1	97	62.000	ENSPMGG00000017463	rnaseh1	99	59.489	Periophthalmus_magnuspinnatus
ENSIPUG00000023060	rnaseh1	97	56.923	ENSPEMG00000022465	-	91	57.308	Peromyscus_maniculatus_bairdii
ENSIPUG00000023060	rnaseh1	58	39.073	ENSPCIG00000026047	-	85	39.073	Phascolarctos_cinereus
ENSIPUG00000023060	rnaseh1	97	57.031	ENSPCIG00000023334	-	99	54.577	Phascolarctos_cinereus
ENSIPUG00000023060	rnaseh1	98	61.679	ENSPFOG00000002841	rnaseh1	100	58.725	Poecilia_formosa
ENSIPUG00000023060	rnaseh1	65	52.880	ENSPLAG00000021349	-	77	52.880	Poecilia_latipinna
ENSIPUG00000023060	rnaseh1	98	61.679	ENSPMEG00000016826	rnaseh1	100	58.725	Poecilia_mexicana
ENSIPUG00000023060	rnaseh1	98	59.712	ENSPREG00000012197	rnaseh1	100	56.623	Poecilia_reticulata
ENSIPUG00000023060	rnaseh1	97	47.012	ENSPPYG00000025873	RNASEH1	89	47.012	Pongo_abelii
ENSIPUG00000023060	rnaseh1	88	50.638	ENSPPYG00000008067	-	90	50.638	Pongo_abelii
ENSIPUG00000023060	rnaseh1	97	57.915	ENSPCAG00000002500	RNASEH1	99	55.401	Procavia_capensis
ENSIPUG00000023060	rnaseh1	97	53.876	ENSPCOG00000019444	RNASEH1	99	51.579	Propithecus_coquereli
ENSIPUG00000023060	rnaseh1	97	58.687	ENSPVAG00000002070	RNASEH1	99	56.643	Pteropus_vampyrus
ENSIPUG00000023060	rnaseh1	98	59.273	ENSPNYG00000001292	rnaseh1	96	57.191	Pundamilia_nyererei
ENSIPUG00000023060	rnaseh1	99	72.348	ENSPNAG00000022344	rnaseh1	99	71.579	Pygocentrus_nattereri
ENSIPUG00000023060	rnaseh1	97	58.301	ENSRNOG00000008584	Rnaseh1	94	57.143	Rattus_norvegicus
ENSIPUG00000023060	rnaseh1	97	56.923	ENSRBIG00000034222	RNASEH1	96	55.235	Rhinopithecus_bieti
ENSIPUG00000023060	rnaseh1	97	56.923	ENSRROG00000041761	RNASEH1	96	55.235	Rhinopithecus_roxellana
ENSIPUG00000023060	rnaseh1	99	42.188	YMR234W	-	87	42.188	Saccharomyces_cerevisiae
ENSIPUG00000023060	rnaseh1	96	59.144	ENSSBOG00000025411	RNASEH1	89	59.144	Saimiri_boliviensis_boliviensis
ENSIPUG00000023060	rnaseh1	98	61.776	ENSSHAG00000013051	RNASEH1	98	59.011	Sarcophilus_harrisii
ENSIPUG00000023060	rnaseh1	98	60.547	ENSSFOG00015002709	rnaseh1	99	59.286	Scleropages_formosus
ENSIPUG00000023060	rnaseh1	98	62.454	ENSSMAG00000007586	rnaseh1	97	61.092	Scophthalmus_maximus
ENSIPUG00000023060	rnaseh1	98	62.963	ENSSDUG00000008217	rnaseh1	95	62.963	Seriola_dumerili
ENSIPUG00000023060	rnaseh1	90	63.306	ENSSLDG00000000442	rnaseh1	94	62.151	Seriola_lalandi_dorsalis
ENSIPUG00000023060	rnaseh1	99	52.899	ENSSPUG00000006644	RNASEH1	99	51.515	Sphenodon_punctatus
ENSIPUG00000023060	rnaseh1	98	62.222	ENSSPAG00000009353	rnaseh1	97	60.544	Stegastes_partitus
ENSIPUG00000023060	rnaseh1	97	58.271	ENSSSCG00000025305	RNASEH1	99	55.631	Sus_scrofa
ENSIPUG00000023060	rnaseh1	98	53.214	ENSTGUG00000012980	RNASEH1	94	53.214	Taeniopygia_guttata
ENSIPUG00000023060	rnaseh1	98	60.517	ENSTRUG00000015774	rnaseh1	97	60.517	Takifugu_rubripes
ENSIPUG00000023060	rnaseh1	99	62.825	ENSTNIG00000010715	rnaseh1	97	62.825	Tetraodon_nigroviridis
ENSIPUG00000023060	rnaseh1	98	52.830	ENSTTRG00000001615	RNASEH1	91	52.830	Tursiops_truncatus
ENSIPUG00000023060	rnaseh1	71	59.459	ENSUAMG00000018254	RNASEH1	94	59.459	Ursus_americanus
ENSIPUG00000023060	rnaseh1	86	46.800	ENSUMAG00000003941	RNASEH1	83	46.800	Ursus_maritimus
ENSIPUG00000023060	rnaseh1	99	46.316	ENSVPAG00000011589	RNASEH1	99	46.316	Vicugna_pacos
ENSIPUG00000023060	rnaseh1	98	57.364	ENSVVUG00000008633	RNASEH1	88	54.804	Vulpes_vulpes
ENSIPUG00000023060	rnaseh1	96	43.320	ENSXETG00000030371	-	99	43.320	Xenopus_tropicalis
ENSIPUG00000023060	rnaseh1	97	54.815	ENSXETG00000001212	rnaseh1	91	54.815	Xenopus_tropicalis
ENSIPUG00000023060	rnaseh1	99	59.559	ENSXMAG00000002357	rnaseh1	100	56.419	Xiphophorus_maculatus