EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000023072 (Gene tree)
Gene ID: 108255592
Gene Symbol: gatc
Alias: si:rp71-1c23.3
Full Name: glutamyl-tRNA amidotransferase subunit C
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 17299 bases
Position: chr22:18358776-18376074
Accession: 108255592
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000034364	Glu-tRNAGln	PF02686.15	2.2e-08	1	1
ENSIPUP00000034362	Glu-tRNAGln	PF02686.15	2.7e-08	1	1
ENSIPUP00000034366	Glu-tRNAGln	PF02686.15	2.7e-08	1	1
ENSIPUP00000034370	Glu-tRNAGln	PF02686.15	2.7e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000035709	-	1709	-	ENSIPUP00000034366	215 (aa)	-	A0A2D0PMD0
ENSIPUT00000035713	-	2937	XM_017451675	ENSIPUP00000034370	215 (aa)	XP_017307164	A0A2D0PMD0
ENSIPUT00000035705	-	1959	-	ENSIPUP00000034362	215 (aa)	-	A0A2D0PMD0
ENSIPUT00000035707	-	957	-	ENSIPUP00000034364	198 (aa)	-	A0A2D0PQ02

Gene Model

Click here to download ENSIPUG00000023072's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu00970	Aminoacyl-tRNA biosynthesis	KEGG
ipu01100	Metabolic pathways	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000023072's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000023072	gatc	51	65.000	ENSG00000257218	GATC	100	72.340	Homo_sapiens
ENSIPUG00000023072	gatc	62	57.364	ENSAMEG00000013298	-	74	66.000	Ailuropoda_melanoleuca
ENSIPUG00000023072	gatc	58	70.175	ENSACIG00000016853	gatc	82	70.175	Amphilophus_citrinellus
ENSIPUG00000023072	gatc	58	77.600	ENSAOCG00000014641	gatc	100	77.600	Amphiprion_ocellaris
ENSIPUG00000023072	gatc	60	78.295	ENSAPEG00000023411	gatc	66	78.295	Amphiprion_percula
ENSIPUG00000023072	gatc	64	63.780	ENSACAG00000002868	-	90	62.205	Anolis_carolinensis
ENSIPUG00000023072	gatc	51	66.000	ENSANAG00000034389	-	91	50.000	Aotus_nancymaae
ENSIPUG00000023072	gatc	76	62.428	ENSACLG00000026251	gatc	90	61.272	Astatotilapia_calliptera
ENSIPUG00000023072	gatc	84	72.432	ENSAMXG00000004252	gatc	81	72.432	Astyanax_mexicanus
ENSIPUG00000023072	gatc	51	65.000	ENSBTAG00000012791	GATC	74	65.000	Bos_taurus
ENSIPUG00000023072	gatc	57	37.500	WBGene00013433	Y66D12A.7	67	39.316	Caenorhabditis_elegans
ENSIPUG00000023072	gatc	51	66.000	ENSCJAG00000001183	-	55	66.000	Callithrix_jacchus
ENSIPUG00000023072	gatc	62	57.364	ENSCAFG00000010311	-	74	68.000	Canis_familiaris
ENSIPUG00000023072	gatc	62	57.364	ENSCAFG00020020606	-	74	68.000	Canis_lupus_dingo
ENSIPUG00000023072	gatc	54	63.208	ENSCHIG00000019423	-	78	63.208	Capra_hircus
ENSIPUG00000023072	gatc	51	66.000	ENSTSYG00000006845	-	79	63.303	Carlito_syrichta
ENSIPUG00000023072	gatc	51	66.000	ENSCCAG00000022235	-	74	66.000	Cebus_capucinus
ENSIPUG00000023072	gatc	51	65.000	ENSCATG00000038807	GATC	74	65.000	Cercocebus_atys
ENSIPUG00000023072	gatc	51	66.000	ENSCSAG00000002259	GATC	74	66.000	Chlorocebus_sabaeus
ENSIPUG00000023072	gatc	51	67.000	ENSCHOG00000009235	-	74	67.000	Choloepus_hoffmanni
ENSIPUG00000023072	gatc	72	59.281	ENSCPBG00000011342	-	89	59.281	Chrysemys_picta_bellii
ENSIPUG00000023072	gatc	51	64.356	ENSCANG00000031071	GATC	74	64.356	Colobus_angolensis_palliatus
ENSIPUG00000023072	gatc	51	64.356	ENSCGRG00001019220	-	65	64.356	Cricetulus_griseus_chok1gshd
ENSIPUG00000023072	gatc	51	60.396	ENSCGRG00001005508	-	50	60.396	Cricetulus_griseus_chok1gshd
ENSIPUG00000023072	gatc	51	59.406	ENSCGRG00000019471	GATC	50	59.406	Cricetulus_griseus_crigri
ENSIPUG00000023072	gatc	51	64.356	ENSCGRG00000004184	-	65	64.356	Cricetulus_griseus_crigri
ENSIPUG00000023072	gatc	56	68.182	ENSCSEG00000016618	-	64	68.182	Cynoglossus_semilaevis
ENSIPUG00000023072	gatc	59	73.228	ENSCSEG00000007798	gatc	64	73.228	Cynoglossus_semilaevis
ENSIPUG00000023072	gatc	66	77.305	ENSCVAG00000004364	gatc	68	81.395	Cyprinodon_variegatus
ENSIPUG00000023072	gatc	79	69.364	ENSDARG00000056855	gatc	94	68.786	Danio_rerio
ENSIPUG00000023072	gatc	50	68.687	ENSDNOG00000012593	-	62	62.069	Dasypus_novemcinctus
ENSIPUG00000023072	gatc	53	42.017	FBgn0064115	GatC	76	42.373	Drosophila_melanogaster
ENSIPUG00000023072	gatc	62	49.180	ENSETEG00000002604	-	77	52.381	Echinops_telfairi
ENSIPUG00000023072	gatc	66	56.489	ENSECAG00000011118	-	85	58.197	Equus_caballus
ENSIPUG00000023072	gatc	62	53.543	ENSEEUG00000011638	-	94	53.543	Erinaceus_europaeus
ENSIPUG00000023072	gatc	64	65.116	ENSELUG00000012608	gatc	94	65.116	Esox_lucius
ENSIPUG00000023072	gatc	59	59.322	ENSFCAG00000038718	-	74	67.000	Felis_catus
ENSIPUG00000023072	gatc	70	58.156	ENSFALG00000007564	-	78	66.387	Ficedula_albicollis
ENSIPUG00000023072	gatc	64	58.730	ENSFDAG00000018720	-	80	63.636	Fukomys_damarensis
ENSIPUG00000023072	gatc	93	56.915	ENSFHEG00000014992	GATC	69	80.620	Fundulus_heteroclitus
ENSIPUG00000023072	gatc	66	66.197	ENSGMOG00000008742	gatc	79	69.767	Gadus_morhua
ENSIPUG00000023072	gatc	54	66.981	ENSGALG00000007195	-	79	64.865	Gallus_gallus
ENSIPUG00000023072	gatc	59	71.654	ENSGAFG00000012801	gatc	70	79.091	Gambusia_affinis
ENSIPUG00000023072	gatc	60	75.385	ENSGACG00000008973	gatc	66	75.194	Gasterosteus_aculeatus
ENSIPUG00000023072	gatc	72	59.627	ENSGAGG00000016018	-	70	69.531	Gopherus_agassizii
ENSIPUG00000023072	gatc	76	63.584	ENSHBUG00000006827	gatc	90	62.428	Haplochromis_burtoni
ENSIPUG00000023072	gatc	53	64.423	ENSHGLG00000011394	GATC	76	64.423	Heterocephalus_glaber_female
ENSIPUG00000023072	gatc	53	62.500	ENSHGLG00100018850	-	76	62.500	Heterocephalus_glaber_male
ENSIPUG00000023072	gatc	60	77.344	ENSHCOG00000009209	gatc	100	77.344	Hippocampus_comes
ENSIPUG00000023072	gatc	62	58.197	ENSSTOG00000025740	-	65	65.000	Ictidomys_tridecemlineatus
ENSIPUG00000023072	gatc	62	57.258	ENSJJAG00000000369	Gatc	61	68.750	Jaculus_jaculus
ENSIPUG00000023072	gatc	60	71.318	ENSKMAG00000016476	gatc	99	71.318	Kryptolebias_marmoratus
ENSIPUG00000023072	gatc	60	72.093	ENSLBEG00000007603	gatc	71	72.093	Labrus_bergylta
ENSIPUG00000023072	gatc	80	52.201	ENSLACG00000018239	-	66	65.625	Latimeria_chalumnae
ENSIPUG00000023072	gatc	79	63.905	ENSLOCG00000004056	gatc	91	63.905	Lepisosteus_oculatus
ENSIPUG00000023072	gatc	51	65.000	ENSMFAG00000034197	GATC	74	65.000	Macaca_fascicularis
ENSIPUG00000023072	gatc	51	65.000	ENSMMUG00000046665	GATC	74	65.000	Macaca_mulatta
ENSIPUG00000023072	gatc	51	65.000	ENSMNEG00000034653	GATC	74	65.000	Macaca_nemestrina
ENSIPUG00000023072	gatc	51	66.000	ENSMLEG00000039862	GATC	74	66.000	Mandrillus_leucophaeus
ENSIPUG00000023072	gatc	60	80.000	ENSMAMG00000015851	gatc	71	79.845	Mastacembelus_armatus
ENSIPUG00000023072	gatc	76	63.006	ENSMZEG00005016072	gatc	90	61.850	Maylandia_zebra
ENSIPUG00000023072	gatc	65	60.156	ENSMGAG00000008733	-	100	67.925	Meleagris_gallopavo
ENSIPUG00000023072	gatc	51	65.347	ENSMAUG00000012756	Gatc	65	65.347	Mesocricetus_auratus
ENSIPUG00000023072	gatc	51	69.000	ENSMICG00000008669	-	74	69.000	Microcebus_murinus
ENSIPUG00000023072	gatc	56	70.000	ENSMMOG00000017695	gatc	92	70.000	Mola_mola
ENSIPUG00000023072	gatc	52	63.107	ENSMODG00000003152	-	78	64.078	Monodelphis_domestica
ENSIPUG00000023072	gatc	64	57.480	ENSMPUG00000003183	-	74	67.000	Mustela_putorius_furo
ENSIPUG00000023072	gatc	76	63.584	ENSNBRG00000007810	gatc	90	62.428	Neolamprologus_brichardi
ENSIPUG00000023072	gatc	62	56.557	ENSNLEG00000015651	GATC	78	63.208	Nomascus_leucogenys
ENSIPUG00000023072	gatc	51	63.000	ENSMEUG00000004064	-	86	60.748	Notamacropus_eugenii
ENSIPUG00000023072	gatc	61	60.000	ENSOPRG00000004226	-	74	68.317	Ochotona_princeps
ENSIPUG00000023072	gatc	61	73.881	ENSONIG00000013444	gatc	90	74.809	Oreochromis_niloticus
ENSIPUG00000023072	gatc	65	56.589	ENSOCUG00000009867	-	76	66.990	Oryctolagus_cuniculus
ENSIPUG00000023072	gatc	56	77.477	ENSORLG00000007156	gatc	100	76.860	Oryzias_latipes
ENSIPUG00000023072	gatc	60	75.194	ENSORLG00020014991	gatc	69	75.194	Oryzias_latipes_hni
ENSIPUG00000023072	gatc	60	75.194	ENSORLG00015003450	gatc	69	75.194	Oryzias_latipes_hsok
ENSIPUG00000023072	gatc	99	52.792	ENSOMEG00000002280	gatc	69	75.969	Oryzias_melastigma
ENSIPUG00000023072	gatc	53	64.423	ENSOGAG00000003850	-	95	64.423	Otolemur_garnettii
ENSIPUG00000023072	gatc	62	55.814	ENSOARG00000012338	-	89	60.870	Ovis_aries
ENSIPUG00000023072	gatc	51	65.000	ENSPPAG00000029164	GATC	74	65.000	Pan_paniscus
ENSIPUG00000023072	gatc	51	66.000	ENSPPRG00000000929	-	74	66.000	Panthera_pardus
ENSIPUG00000023072	gatc	51	66.000	ENSPTIG00000009889	-	74	66.000	Panthera_tigris_altaica
ENSIPUG00000023072	gatc	51	65.000	ENSPTRG00000049887	GATC	74	65.000	Pan_troglodytes
ENSIPUG00000023072	gatc	51	64.000	ENSPANG00000033975	GATC	74	64.000	Papio_anubis
ENSIPUG00000023072	gatc	80	60.000	ENSPKIG00000024856	gatc	66	73.643	Paramormyrops_kingsleyae
ENSIPUG00000023072	gatc	54	69.159	ENSPSIG00000011112	-	98	67.826	Pelodiscus_sinensis
ENSIPUG00000023072	gatc	76	64.238	ENSPMGG00000018829	gatc	80	78.571	Periophthalmus_magnuspinnatus
ENSIPUG00000023072	gatc	59	55.085	ENSPCIG00000025999	-	60	63.441	Phascolarctos_cinereus
ENSIPUG00000023072	gatc	72	69.677	ENSPFOG00000011603	gatc	70	79.070	Poecilia_formosa
ENSIPUG00000023072	gatc	72	69.032	ENSPLAG00000002471	gatc	70	78.295	Poecilia_latipinna
ENSIPUG00000023072	gatc	72	69.032	ENSPMEG00000020958	gatc	70	78.295	Poecilia_mexicana
ENSIPUG00000023072	gatc	56	80.180	ENSPREG00000022256	gatc	75	80.180	Poecilia_reticulata
ENSIPUG00000023072	gatc	53	63.462	ENSPPYG00000005030	GATC	76	63.462	Pongo_abelii
ENSIPUG00000023072	gatc	62	59.016	ENSPCAG00000013864	-	90	59.016	Procavia_capensis
ENSIPUG00000023072	gatc	53	59.615	ENSPCOG00000015558	-	69	66.292	Propithecus_coquereli
ENSIPUG00000023072	gatc	62	61.475	ENSPVAG00000002228	-	71	69.792	Pteropus_vampyrus
ENSIPUG00000023072	gatc	76	63.006	ENSPNYG00000016015	gatc	90	61.850	Pundamilia_nyererei
ENSIPUG00000023072	gatc	100	64.444	ENSPNAG00000001239	gatc	100	64.444	Pygocentrus_nattereri
ENSIPUG00000023072	gatc	51	66.000	ENSRBIG00000033363	GATC	74	66.000	Rhinopithecus_bieti
ENSIPUG00000023072	gatc	51	66.000	ENSRROG00000042802	GATC	74	66.000	Rhinopithecus_roxellana
ENSIPUG00000023072	gatc	51	64.000	ENSSBOG00000033750	-	74	64.000	Saimiri_boliviensis_boliviensis
ENSIPUG00000023072	gatc	54	62.264	ENSSHAG00000005745	-	100	62.264	Sarcophilus_harrisii
ENSIPUG00000023072	gatc	58	76.316	ENSSFOG00015002508	gatc	82	72.093	Scleropages_formosus
ENSIPUG00000023072	gatc	84	64.481	ENSSMAG00000014280	gatc	72	77.519	Scophthalmus_maximus
ENSIPUG00000023072	gatc	60	75.969	ENSSDUG00000012206	gatc	66	75.969	Seriola_dumerili
ENSIPUG00000023072	gatc	60	75.969	ENSSLDG00000025159	gatc	65	75.969	Seriola_lalandi_dorsalis
ENSIPUG00000023072	gatc	69	57.718	ENSSPUG00000015693	-	73	70.297	Sphenodon_punctatus
ENSIPUG00000023072	gatc	66	75.887	ENSSPAG00000011860	gatc	68	79.845	Stegastes_partitus
ENSIPUG00000023072	gatc	57	58.929	ENSSSCG00000032747	-	70	66.667	Sus_scrofa
ENSIPUG00000023072	gatc	54	71.963	ENSTGUG00000009561	-	99	71.963	Taeniopygia_guttata
ENSIPUG00000023072	gatc	60	77.692	ENSTRUG00000021596	gatc	65	77.519	Takifugu_rubripes
ENSIPUG00000023072	gatc	60	76.923	ENSTNIG00000015879	gatc	62	76.744	Tetraodon_nigroviridis
ENSIPUG00000023072	gatc	51	68.000	ENSTTRG00000000144	GATC	74	68.000	Tursiops_truncatus
ENSIPUG00000023072	gatc	62	58.140	ENSUAMG00000015523	-	74	67.000	Ursus_americanus
ENSIPUG00000023072	gatc	59	60.169	ENSVVUG00000021055	-	74	68.000	Vulpes_vulpes
ENSIPUG00000023072	gatc	61	74.380	ENSXCOG00000017087	gatc	82	79.464	Xiphophorus_couchianus
ENSIPUG00000023072	gatc	83	58.084	ENSXMAG00000018267	gatc	90	58.084	Xiphophorus_maculatus