EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000023230 (Gene tree)
Gene ID: 108277702
Gene Symbol: prpf8
Alias: id:ibd1257|ik:tdsubc_2a9|im:7141966|tdsubc_2a9|wu:fb37c02|wu:fb73e06|xx:tdsubc_2a9|zgc:56504
Full Name: pre-mRNA processing factor 8
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 17469 bases
Position: chr17:11421584-11439052
Accession: 108277702
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000034607	RRM_4	PF10598.9	3.8e-48	1	1
ENSIPUP00000034607	U5_2-snRNA_bdg	PF10597.9	8.3e-74	1	1
ENSIPUP00000034607	PRO8NT	PF08082.11	6.8e-87	1	1
ENSIPUP00000034607	U6-snRNA_bdg	PF10596.9	2e-89	1	1
ENSIPUP00000034607	PROCN	PF08083.11	2.1e-235	1	1
ENSIPUP00000034607	PRP8_domainIV	PF12134.8	4.9e-130	1	1
ENSIPUP00000034607	PROCT	PF08084.11	3e-53	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000035967	-	9107	XM_017490530	ENSIPUP00000034607	2338 (aa)	XP_017346019	A0A2D0STK3

Gene Model

Click here to download ENSIPUG00000023230's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000023230's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000023230	prpf8	100	97.605	ENSG00000174231	PRPF8	100	97.605	Homo_sapiens
ENSIPUG00000023230	prpf8	100	99.016	ENSAPOG00000010079	prpf8	100	99.016	Acanthochromis_polyacanthus
ENSIPUG00000023230	prpf8	100	97.605	ENSAMEG00000007940	PRPF8	100	97.605	Ailuropoda_melanoleuca
ENSIPUG00000023230	prpf8	100	96.900	ENSACIG00000018280	prpf8	100	96.900	Amphilophus_citrinellus
ENSIPUG00000023230	prpf8	100	98.973	ENSAOCG00000010725	prpf8	100	98.973	Amphiprion_ocellaris
ENSIPUG00000023230	prpf8	100	98.973	ENSAPEG00000014397	prpf8	100	98.973	Amphiprion_percula
ENSIPUG00000023230	prpf8	100	98.332	ENSATEG00000010062	prpf8	100	98.332	Anabas_testudineus
ENSIPUG00000023230	prpf8	96	98.087	ENSAPLG00000010357	PRPF8	100	98.087	Anas_platyrhynchos
ENSIPUG00000023230	prpf8	83	95.979	ENSACAG00000014784	PRPF8	99	95.979	Anolis_carolinensis
ENSIPUG00000023230	prpf8	100	97.605	ENSANAG00000032629	PRPF8	100	97.605	Aotus_nancymaae
ENSIPUG00000023230	prpf8	100	98.298	ENSACLG00000020858	prpf8	100	98.298	Astatotilapia_calliptera
ENSIPUG00000023230	prpf8	100	99.230	ENSAMXG00000020291	prpf8	100	99.230	Astyanax_mexicanus
ENSIPUG00000023230	prpf8	100	97.605	ENSBTAG00000011488	PRPF8	100	97.605	Bos_taurus
ENSIPUG00000023230	prpf8	99	86.412	WBGene00004187	prp-8	99	87.024	Caenorhabditis_elegans
ENSIPUG00000023230	prpf8	100	97.605	ENSCJAG00000001911	PRPF8	100	97.605	Callithrix_jacchus
ENSIPUG00000023230	prpf8	100	97.605	ENSCAFG00000019221	PRPF8	100	97.605	Canis_familiaris
ENSIPUG00000023230	prpf8	96	98.037	ENSCAFG00020009943	PRPF8	100	98.037	Canis_lupus_dingo
ENSIPUG00000023230	prpf8	100	97.605	ENSCHIG00000017499	PRPF8	100	97.605	Capra_hircus
ENSIPUG00000023230	prpf8	100	97.605	ENSTSYG00000014120	PRPF8	100	97.605	Carlito_syrichta
ENSIPUG00000023230	prpf8	96	95.813	ENSCAPG00000009459	PRPF8	99	95.813	Cavia_aperea
ENSIPUG00000023230	prpf8	100	97.605	ENSCPOG00000010379	PRPF8	100	97.605	Cavia_porcellus
ENSIPUG00000023230	prpf8	100	97.605	ENSCCAG00000031983	-	100	97.605	Cebus_capucinus
ENSIPUG00000023230	prpf8	100	97.605	ENSCATG00000038595	PRPF8	100	97.605	Cercocebus_atys
ENSIPUG00000023230	prpf8	100	97.605	ENSCLAG00000004388	PRPF8	100	97.605	Chinchilla_lanigera
ENSIPUG00000023230	prpf8	100	97.605	ENSCSAG00000013929	PRPF8	100	97.605	Chlorocebus_sabaeus
ENSIPUG00000023230	prpf8	81	97.333	ENSCHOG00000008590	PRPF8	88	97.333	Choloepus_hoffmanni
ENSIPUG00000023230	prpf8	100	97.648	ENSCPBG00000020409	PRPF8	100	97.648	Chrysemys_picta_bellii
ENSIPUG00000023230	prpf8	98	92.874	ENSCSAVG00000007825	-	100	91.237	Ciona_savignyi
ENSIPUG00000023230	prpf8	100	97.605	ENSCANG00000043088	PRPF8	100	97.605	Colobus_angolensis_palliatus
ENSIPUG00000023230	prpf8	73	99.409	ENSCGRG00000005129	Prpf8	100	99.409	Cricetulus_griseus_crigri
ENSIPUG00000023230	prpf8	100	98.974	ENSCSEG00000007905	prpf8	100	98.974	Cynoglossus_semilaevis
ENSIPUG00000023230	prpf8	100	98.847	ENSDARG00000026180	prpf8	100	98.847	Danio_rerio
ENSIPUG00000023230	prpf8	93	97.747	ENSDNOG00000018471	PRPF8	99	97.747	Dasypus_novemcinctus
ENSIPUG00000023230	prpf8	84	96.176	ENSDORG00000006185	Prpf8	96	96.176	Dipodomys_ordii
ENSIPUG00000023230	prpf8	99	91.481	FBgn0033688	Prp8	97	91.922	Drosophila_melanogaster
ENSIPUG00000023230	prpf8	100	92.344	ENSETEG00000017592	PRPF8	100	92.344	Echinops_telfairi
ENSIPUG00000023230	prpf8	99	93.133	ENSEBUG00000006548	prpf8	99	93.133	Eptatretus_burgeri
ENSIPUG00000023230	prpf8	100	97.605	ENSEASG00005009514	PRPF8	100	97.605	Equus_asinus_asinus
ENSIPUG00000023230	prpf8	97	98.066	ENSECAG00000021318	PRPF8	100	98.066	Equus_caballus
ENSIPUG00000023230	prpf8	67	98.519	ENSEEUG00000012120	-	67	98.519	Erinaceus_europaeus
ENSIPUG00000023230	prpf8	98	97.640	ENSELUG00000007120	prpf8	99	97.640	Esox_lucius
ENSIPUG00000023230	prpf8	100	97.605	ENSFCAG00000006297	PRPF8	100	97.605	Felis_catus
ENSIPUG00000023230	prpf8	100	97.733	ENSFALG00000006628	PRPF8	100	97.733	Ficedula_albicollis
ENSIPUG00000023230	prpf8	100	97.605	ENSFDAG00000004711	PRPF8	100	97.605	Fukomys_damarensis
ENSIPUG00000023230	prpf8	100	98.335	ENSFHEG00000021084	prpf8	100	98.335	Fundulus_heteroclitus
ENSIPUG00000023230	prpf8	100	96.658	ENSGMOG00000002028	prpf8	99	96.658	Gadus_morhua
ENSIPUG00000023230	prpf8	100	97.733	ENSGALG00000002943	PRPF8	100	97.733	Gallus_gallus
ENSIPUG00000023230	prpf8	99	98.498	ENSGAFG00000010337	prpf8	99	98.498	Gambusia_affinis
ENSIPUG00000023230	prpf8	100	98.631	ENSGACG00000008504	prpf8	100	98.631	Gasterosteus_aculeatus
ENSIPUG00000023230	prpf8	100	97.690	ENSGAGG00000008350	PRPF8	100	97.690	Gopherus_agassizii
ENSIPUG00000023230	prpf8	100	97.605	ENSGGOG00000005516	PRPF8	100	97.605	Gorilla_gorilla
ENSIPUG00000023230	prpf8	100	98.546	ENSHBUG00000016192	prpf8	100	98.546	Haplochromis_burtoni
ENSIPUG00000023230	prpf8	100	97.605	ENSHGLG00000012029	PRPF8	100	97.605	Heterocephalus_glaber_female
ENSIPUG00000023230	prpf8	100	97.605	ENSHGLG00100016494	PRPF8	100	97.605	Heterocephalus_glaber_male
ENSIPUG00000023230	prpf8	100	98.717	ENSHCOG00000016414	prpf8	100	98.717	Hippocampus_comes
ENSIPUG00000023230	prpf8	100	97.605	ENSSTOG00000005128	PRPF8	100	97.605	Ictidomys_tridecemlineatus
ENSIPUG00000023230	prpf8	100	95.466	ENSJJAG00000021159	Prpf8	100	95.466	Jaculus_jaculus
ENSIPUG00000023230	prpf8	99	98.669	ENSKMAG00000016118	prpf8	99	98.669	Kryptolebias_marmoratus
ENSIPUG00000023230	prpf8	100	98.931	ENSLBEG00000026903	prpf8	100	98.931	Labrus_bergylta
ENSIPUG00000023230	prpf8	95	95.491	ENSLACG00000010479	PRPF8	99	98.116	Latimeria_chalumnae
ENSIPUG00000023230	prpf8	99	98.418	ENSLOCG00000005409	prpf8	99	98.418	Lepisosteus_oculatus
ENSIPUG00000023230	prpf8	100	97.605	ENSLAFG00000015445	PRPF8	100	97.605	Loxodonta_africana
ENSIPUG00000023230	prpf8	100	97.605	ENSMFAG00000039995	PRPF8	100	97.605	Macaca_fascicularis
ENSIPUG00000023230	prpf8	100	97.605	ENSMMUG00000004820	PRPF8	100	97.605	Macaca_mulatta
ENSIPUG00000023230	prpf8	100	97.605	ENSMNEG00000035713	PRPF8	100	97.605	Macaca_nemestrina
ENSIPUG00000023230	prpf8	100	97.605	ENSMLEG00000037937	PRPF8	100	97.605	Mandrillus_leucophaeus
ENSIPUG00000023230	prpf8	100	98.931	ENSMAMG00000008919	prpf8	100	98.931	Mastacembelus_armatus
ENSIPUG00000023230	prpf8	100	98.298	ENSMZEG00005015073	prpf8	100	98.298	Maylandia_zebra
ENSIPUG00000023230	prpf8	100	97.733	ENSMGAG00000004769	PRPF8	100	97.733	Meleagris_gallopavo
ENSIPUG00000023230	prpf8	100	97.605	ENSMICG00000010320	PRPF8	100	97.605	Microcebus_murinus
ENSIPUG00000023230	prpf8	100	97.605	ENSMOCG00000016838	Prpf8	100	97.605	Microtus_ochrogaster
ENSIPUG00000023230	prpf8	100	98.460	ENSMMOG00000011887	prpf8	100	98.460	Mola_mola
ENSIPUG00000023230	prpf8	100	97.605	ENSMODG00000010480	PRPF8	100	97.605	Monodelphis_domestica
ENSIPUG00000023230	prpf8	97	98.170	ENSMALG00000003558	prpf8	100	98.170	Monopterus_albus
ENSIPUG00000023230	prpf8	100	97.562	MGP_CAROLIEiJ_G0016740	Prpf8	100	97.562	Mus_caroli
ENSIPUG00000023230	prpf8	100	97.562	ENSMUSG00000020850	Prpf8	100	97.562	Mus_musculus
ENSIPUG00000023230	prpf8	100	97.519	MGP_PahariEiJ_G0017877	Prpf8	100	97.519	Mus_pahari
ENSIPUG00000023230	prpf8	100	97.562	MGP_SPRETEiJ_G0017583	Prpf8	100	97.562	Mus_spretus
ENSIPUG00000023230	prpf8	100	97.605	ENSMPUG00000013227	PRPF8	100	97.605	Mustela_putorius_furo
ENSIPUG00000023230	prpf8	100	97.437	ENSMLUG00000002666	PRPF8	100	97.437	Myotis_lucifugus
ENSIPUG00000023230	prpf8	100	95.851	ENSNGAG00000005305	Prpf8	100	95.851	Nannospalax_galili
ENSIPUG00000023230	prpf8	100	98.340	ENSNBRG00000013127	prpf8	100	98.340	Neolamprologus_brichardi
ENSIPUG00000023230	prpf8	97	96.760	ENSNLEG00000000897	PRPF8	98	96.760	Nomascus_leucogenys
ENSIPUG00000023230	prpf8	98	96.219	ENSMEUG00000015999	PRPF8	100	96.219	Notamacropus_eugenii
ENSIPUG00000023230	prpf8	100	95.851	ENSOPRG00000003102	PRPF8	100	95.595	Ochotona_princeps
ENSIPUG00000023230	prpf8	100	97.605	ENSODEG00000008468	PRPF8	100	97.605	Octodon_degus
ENSIPUG00000023230	prpf8	100	98.298	ENSONIG00000008153	prpf8	100	98.298	Oreochromis_niloticus
ENSIPUG00000023230	prpf8	82	99.346	ENSOANG00000004250	PRPF8	97	99.346	Ornithorhynchus_anatinus
ENSIPUG00000023230	prpf8	100	97.605	ENSOCUG00000000081	PRPF8	100	97.605	Oryctolagus_cuniculus
ENSIPUG00000023230	prpf8	100	97.876	ENSORLG00000008036	prpf8	100	97.876	Oryzias_latipes
ENSIPUG00000023230	prpf8	100	97.834	ENSORLG00020021070	prpf8	100	97.834	Oryzias_latipes_hni
ENSIPUG00000023230	prpf8	100	97.876	ENSORLG00015002340	prpf8	100	97.876	Oryzias_latipes_hsok
ENSIPUG00000023230	prpf8	100	96.389	ENSOMEG00000016866	prpf8	100	96.389	Oryzias_melastigma
ENSIPUG00000023230	prpf8	100	97.480	ENSOARG00000013312	PRPF8	100	97.480	Ovis_aries
ENSIPUG00000023230	prpf8	100	97.605	ENSPPAG00000042753	PRPF8	100	97.605	Pan_paniscus
ENSIPUG00000023230	prpf8	100	97.605	ENSPPRG00000008746	PRPF8	100	97.605	Panthera_pardus
ENSIPUG00000023230	prpf8	100	97.519	ENSPTIG00000019200	PRPF8	100	97.519	Panthera_tigris_altaica
ENSIPUG00000023230	prpf8	100	97.605	ENSPTRG00000039576	PRPF8	100	97.605	Pan_troglodytes
ENSIPUG00000023230	prpf8	98	98.045	ENSPANG00000024607	PRPF8	98	98.045	Papio_anubis
ENSIPUG00000023230	prpf8	100	98.465	ENSPKIG00000011201	prpf8	100	98.465	Paramormyrops_kingsleyae
ENSIPUG00000023230	prpf8	100	97.605	ENSPSIG00000013393	PRPF8	100	97.605	Pelodiscus_sinensis
ENSIPUG00000023230	prpf8	100	97.605	ENSPEMG00000021699	Prpf8	100	97.605	Peromyscus_maniculatus_bairdii
ENSIPUG00000023230	prpf8	96	93.630	ENSPMAG00000005438	prpf8	100	93.675	Petromyzon_marinus
ENSIPUG00000023230	prpf8	100	97.605	ENSPCIG00000022603	PRPF8	100	98.037	Phascolarctos_cinereus
ENSIPUG00000023230	prpf8	100	97.880	ENSPFOG00000007005	prpf8	100	97.837	Poecilia_formosa
ENSIPUG00000023230	prpf8	100	97.092	ENSPLAG00000020777	prpf8	100	97.092	Poecilia_latipinna
ENSIPUG00000023230	prpf8	100	97.880	ENSPMEG00000004051	prpf8	100	97.837	Poecilia_mexicana
ENSIPUG00000023230	prpf8	100	98.589	ENSPREG00000021902	prpf8	100	98.589	Poecilia_reticulata
ENSIPUG00000023230	prpf8	100	97.605	ENSPPYG00000007777	PRPF8	100	97.605	Pongo_abelii
ENSIPUG00000023230	prpf8	90	97.030	ENSPCAG00000008938	PRPF8	90	97.030	Procavia_capensis
ENSIPUG00000023230	prpf8	100	97.605	ENSPCOG00000015182	PRPF8	100	97.605	Propithecus_coquereli
ENSIPUG00000023230	prpf8	93	98.448	ENSPVAG00000002134	PRPF8	93	98.448	Pteropus_vampyrus
ENSIPUG00000023230	prpf8	100	98.546	ENSPNYG00000016356	prpf8	100	98.546	Pundamilia_nyererei
ENSIPUG00000023230	prpf8	100	99.316	ENSPNAG00000009247	prpf8	100	99.316	Pygocentrus_nattereri
ENSIPUG00000023230	prpf8	100	97.562	ENSRNOG00000003495	Prpf8	100	97.562	Rattus_norvegicus
ENSIPUG00000023230	prpf8	100	97.605	ENSRBIG00000031219	PRPF8	100	97.605	Rhinopithecus_bieti
ENSIPUG00000023230	prpf8	100	97.605	ENSRROG00000038014	PRPF8	100	97.605	Rhinopithecus_roxellana
ENSIPUG00000023230	prpf8	99	62.516	YHR165C	PRP8	95	62.602	Saccharomyces_cerevisiae
ENSIPUG00000023230	prpf8	100	97.605	ENSSBOG00000029717	PRPF8	100	97.605	Saimiri_boliviensis_boliviensis
ENSIPUG00000023230	prpf8	100	97.562	ENSSHAG00000006167	PRPF8	100	97.562	Sarcophilus_harrisii
ENSIPUG00000023230	prpf8	100	98.463	ENSSFOG00015013905	prpf8	100	98.463	Scleropages_formosus
ENSIPUG00000023230	prpf8	100	98.888	ENSSMAG00000017736	prpf8	100	98.888	Scophthalmus_maximus
ENSIPUG00000023230	prpf8	100	98.973	ENSSDUG00000003029	prpf8	100	98.973	Seriola_dumerili
ENSIPUG00000023230	prpf8	68	99.499	ENSSLDG00000017096	prpf8	100	99.499	Seriola_lalandi_dorsalis
ENSIPUG00000023230	prpf8	87	94.481	ENSSARG00000002892	PRPF8	87	94.481	Sorex_araneus
ENSIPUG00000023230	prpf8	100	97.437	ENSSPUG00000007463	PRPF8	100	97.437	Sphenodon_punctatus
ENSIPUG00000023230	prpf8	100	98.417	ENSSPAG00000015639	prpf8	100	98.417	Stegastes_partitus
ENSIPUG00000023230	prpf8	100	97.605	ENSSSCG00000017817	PRPF8	100	97.605	Sus_scrofa
ENSIPUG00000023230	prpf8	52	98.604	ENSTGUG00000015597	-	95	98.604	Taeniopygia_guttata
ENSIPUG00000023230	prpf8	100	97.733	ENSTGUG00000005648	-	100	97.733	Taeniopygia_guttata
ENSIPUG00000023230	prpf8	100	98.631	ENSTRUG00000015906	prpf8	100	98.631	Takifugu_rubripes
ENSIPUG00000023230	prpf8	95	99.283	ENSTNIG00000003460	prpf8	99	99.283	Tetraodon_nigroviridis
ENSIPUG00000023230	prpf8	93	98.707	ENSTBEG00000006431	PRPF8	93	98.707	Tupaia_belangeri
ENSIPUG00000023230	prpf8	100	97.006	ENSTTRG00000006869	PRPF8	100	97.006	Tursiops_truncatus
ENSIPUG00000023230	prpf8	54	96.276	ENSUAMG00000015644	-	96	96.276	Ursus_americanus
ENSIPUG00000023230	prpf8	100	97.348	ENSUMAG00000009385	PRPF8	100	97.348	Ursus_maritimus
ENSIPUG00000023230	prpf8	71	97.931	ENSVPAG00000006063	-	71	97.931	Vicugna_pacos
ENSIPUG00000023230	prpf8	100	97.605	ENSVVUG00000021695	PRPF8	99	97.605	Vulpes_vulpes
ENSIPUG00000023230	prpf8	100	97.563	ENSXETG00000022259	prpf8	100	97.563	Xenopus_tropicalis
ENSIPUG00000023230	prpf8	100	98.419	ENSXCOG00000012775	prpf8	100	98.419	Xiphophorus_couchianus
ENSIPUG00000023230	prpf8	100	98.462	ENSXMAG00000008505	prpf8	100	98.462	Xiphophorus_maculatus