EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000023450 (Gene tree)
Gene ID: 108266451
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 6639 bases
Position: chr6:13266871-13273509
Accession: 108266451
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000034928	Smg4_UPF3	PF03467.15	2e-54	1	1
ENSIPUP00000034920	Smg4_UPF3	PF03467.15	2.2e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000036297	-	2483	XM_017469782	ENSIPUP00000034920	482 (aa)	XP_017325271	W5UFK8
ENSIPUT00000036305	-	2405	XM_017469783	ENSIPUP00000034928	456 (aa)	XP_017325272	A0A2D0R3U0

Gene Model

Click here to download ENSIPUG00000023450's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03013	RNA transport	KEGG
ipu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000023450's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000023450	upf3a	93	55.677	ENSG00000169062	UPF3A	96	55.677	Homo_sapiens
ENSIPUG00000023450	upf3a	94	49.891	ENSAPOG00000012775	upf3b	99	45.064	Acanthochromis_polyacanthus
ENSIPUG00000023450	upf3a	99	81.498	ENSAPOG00000013484	upf3a	98	81.678	Acanthochromis_polyacanthus
ENSIPUG00000023450	upf3a	86	59.611	ENSAMEG00000004259	UPF3A	89	59.611	Ailuropoda_melanoleuca
ENSIPUG00000023450	upf3a	99	76.939	ENSACIG00000020468	upf3a	99	77.101	Amphilophus_citrinellus
ENSIPUG00000023450	upf3a	84	49.176	ENSACIG00000013582	upf3b	91	50.797	Amphilophus_citrinellus
ENSIPUG00000023450	upf3a	100	81.210	ENSAOCG00000020784	upf3a	99	81.210	Amphiprion_ocellaris
ENSIPUG00000023450	upf3a	94	50.439	ENSAOCG00000000706	upf3b	99	50.636	Amphiprion_ocellaris
ENSIPUG00000023450	upf3a	61	61.246	ENSAPEG00000005545	upf3b	99	44.563	Amphiprion_percula
ENSIPUG00000023450	upf3a	100	81.210	ENSAPEG00000003519	upf3a	99	81.210	Amphiprion_percula
ENSIPUG00000023450	upf3a	93	49.247	ENSATEG00000018742	upf3b	95	44.516	Anabas_testudineus
ENSIPUG00000023450	upf3a	100	80.346	ENSATEG00000005843	upf3a	99	80.346	Anabas_testudineus
ENSIPUG00000023450	upf3a	89	64.678	ENSACAG00000001540	UPF3A	100	64.678	Anolis_carolinensis
ENSIPUG00000023450	upf3a	93	52.288	ENSANAG00000021713	UPF3A	96	52.079	Aotus_nancymaae
ENSIPUG00000023450	upf3a	85	48.068	ENSANAG00000025598	-	68	66.667	Aotus_nancymaae
ENSIPUG00000023450	upf3a	84	54.279	ENSANAG00000021894	-	77	70.909	Aotus_nancymaae
ENSIPUG00000023450	upf3a	99	77.848	ENSACLG00000026274	upf3a	98	78.013	Astatotilapia_calliptera
ENSIPUG00000023450	upf3a	100	89.419	ENSAMXG00000002608	upf3a	100	89.419	Astyanax_mexicanus
ENSIPUG00000023450	upf3a	91	54.713	ENSCJAG00000019102	UPF3A	96	54.066	Callithrix_jacchus
ENSIPUG00000023450	upf3a	84	54.279	ENSCJAG00000004975	UPF3B	77	70.303	Callithrix_jacchus
ENSIPUG00000023450	upf3a	93	54.923	ENSCAFG00000006504	UPF3A	98	54.923	Canis_familiaris
ENSIPUG00000023450	upf3a	86	45.803	ENSCAFG00020004074	UPF3B	72	66.279	Canis_lupus_dingo
ENSIPUG00000023450	upf3a	95	54.604	ENSCAFG00020014268	UPF3A	85	58.722	Canis_lupus_dingo
ENSIPUG00000023450	upf3a	84	56.818	ENSCHIG00000008682	UPF3A	79	56.250	Capra_hircus
ENSIPUG00000023450	upf3a	75	53.243	ENSTSYG00000001918	UPF3A	95	54.674	Carlito_syrichta
ENSIPUG00000023450	upf3a	84	53.808	ENSTSYG00000014690	UPF3B	76	65.882	Carlito_syrichta
ENSIPUG00000023450	upf3a	72	60.767	ENSCPOG00000006824	UPF3A	79	60.767	Cavia_porcellus
ENSIPUG00000023450	upf3a	82	39.221	ENSCCAG00000029813	-	52	59.494	Cebus_capucinus
ENSIPUG00000023450	upf3a	99	53.306	ENSCCAG00000018406	UPF3A	99	53.306	Cebus_capucinus
ENSIPUG00000023450	upf3a	93	55.902	ENSCATG00000029733	UPF3A	96	55.902	Cercocebus_atys
ENSIPUG00000023450	upf3a	84	49.878	ENSCATG00000017506	UPF3B	77	70.909	Cercocebus_atys
ENSIPUG00000023450	upf3a	93	55.098	ENSCSAG00000017388	UPF3A	96	55.098	Chlorocebus_sabaeus
ENSIPUG00000023450	upf3a	83	58.901	ENSCGRG00001017387	Upf3a	88	59.574	Cricetulus_griseus_chok1gshd
ENSIPUG00000023450	upf3a	83	58.901	ENSCGRG00000001468	Upf3a	88	59.574	Cricetulus_griseus_crigri
ENSIPUG00000023450	upf3a	100	78.261	ENSCSEG00000005106	upf3a	99	78.261	Cynoglossus_semilaevis
ENSIPUG00000023450	upf3a	82	55.250	ENSCSEG00000002046	upf3b	86	46.890	Cynoglossus_semilaevis
ENSIPUG00000023450	upf3a	99	78.728	ENSCVAG00000022333	upf3a	98	78.901	Cyprinodon_variegatus
ENSIPUG00000023450	upf3a	100	86.515	ENSDARG00000069297	upf3a	100	86.515	Danio_rerio
ENSIPUG00000023450	upf3a	85	59.564	ENSDNOG00000034391	UPF3A	93	59.223	Dasypus_novemcinctus
ENSIPUG00000023450	upf3a	92	53.793	ENSETEG00000010110	UPF3A	99	50.101	Echinops_telfairi
ENSIPUG00000023450	upf3a	93	56.264	ENSEASG00005021884	UPF3A	94	56.264	Equus_asinus_asinus
ENSIPUG00000023450	upf3a	84	49.127	ENSEASG00005012919	UPF3B	70	69.565	Equus_asinus_asinus
ENSIPUG00000023450	upf3a	84	49.127	ENSECAG00000016947	UPF3B	70	62.857	Equus_caballus
ENSIPUG00000023450	upf3a	91	58.161	ENSECAG00000017141	UPF3A	94	57.143	Equus_caballus
ENSIPUG00000023450	upf3a	100	80.645	ENSELUG00000011050	upf3a	100	80.645	Esox_lucius
ENSIPUG00000023450	upf3a	91	58.087	ENSFCAG00000014602	UPF3A	96	56.559	Felis_catus
ENSIPUG00000023450	upf3a	70	76.074	ENSGMOG00000019615	upf3a	100	73.371	Gadus_morhua
ENSIPUG00000023450	upf3a	100	78.402	ENSGAFG00000021170	upf3a	99	78.402	Gambusia_affinis
ENSIPUG00000023450	upf3a	81	52.882	ENSGACG00000017435	upf3b	95	43.290	Gasterosteus_aculeatus
ENSIPUG00000023450	upf3a	70	78.505	ENSGACG00000001972	upf3a	100	75.504	Gasterosteus_aculeatus
ENSIPUG00000023450	upf3a	93	55.556	ENSGGOG00000015428	UPF3A	99	53.608	Gorilla_gorilla
ENSIPUG00000023450	upf3a	92	45.921	ENSGGOG00000041219	-	96	43.202	Gorilla_gorilla
ENSIPUG00000023450	upf3a	84	48.724	ENSGGOG00000043074	-	85	45.585	Gorilla_gorilla
ENSIPUG00000023450	upf3a	99	80.921	ENSHBUG00000011325	upf3a	98	81.099	Haplochromis_burtoni
ENSIPUG00000023450	upf3a	83	44.471	ENSHBUG00000017393	upf3b	95	43.441	Haplochromis_burtoni
ENSIPUG00000023450	upf3a	76	57.102	ENSHGLG00000001544	UPF3A	83	57.102	Heterocephalus_glaber_female
ENSIPUG00000023450	upf3a	76	57.102	ENSHGLG00100013244	UPF3A	83	57.102	Heterocephalus_glaber_male
ENSIPUG00000023450	upf3a	99	73.187	ENSHCOG00000013985	upf3a	97	72.867	Hippocampus_comes
ENSIPUG00000023450	upf3a	93	49.889	ENSKMAG00000020300	upf3b	95	46.723	Kryptolebias_marmoratus
ENSIPUG00000023450	upf3a	100	79.310	ENSKMAG00000004381	upf3a	99	79.310	Kryptolebias_marmoratus
ENSIPUG00000023450	upf3a	100	75.817	ENSLBEG00000021570	upf3a	100	75.163	Labrus_bergylta
ENSIPUG00000023450	upf3a	66	45.504	ENSLACG00000006645	UPF3A	74	89.286	Latimeria_chalumnae
ENSIPUG00000023450	upf3a	99	76.509	ENSLOCG00000002665	upf3a	100	76.509	Lepisosteus_oculatus
ENSIPUG00000023450	upf3a	83	51.597	ENSLAFG00000023358	UPF3A	95	51.106	Loxodonta_africana
ENSIPUG00000023450	upf3a	93	55.011	ENSMFAG00000045016	UPF3A	96	54.167	Macaca_fascicularis
ENSIPUG00000023450	upf3a	84	52.644	ENSMFAG00000045414	UPF3B	77	70.909	Macaca_fascicularis
ENSIPUG00000023450	upf3a	91	55.814	ENSMMUG00000007449	UPF3A	96	55.455	Macaca_mulatta
ENSIPUG00000023450	upf3a	84	52.644	ENSMMUG00000020222	UPF3B	77	70.909	Macaca_mulatta
ENSIPUG00000023450	upf3a	84	52.644	ENSMNEG00000039794	UPF3B	77	70.909	Macaca_nemestrina
ENSIPUG00000023450	upf3a	83	60.105	ENSMNEG00000036402	UPF3A	79	60.105	Macaca_nemestrina
ENSIPUG00000023450	upf3a	84	49.878	ENSMLEG00000010999	UPF3B	77	70.909	Mandrillus_leucophaeus
ENSIPUG00000023450	upf3a	83	59.580	ENSMLEG00000014726	UPF3A	89	59.580	Mandrillus_leucophaeus
ENSIPUG00000023450	upf3a	99	76.907	ENSMAMG00000018364	upf3a	98	77.070	Mastacembelus_armatus
ENSIPUG00000023450	upf3a	99	77.848	ENSMZEG00005021571	upf3a	98	78.013	Maylandia_zebra
ENSIPUG00000023450	upf3a	85	66.667	ENSMGAG00000014837	UPF3A	99	66.667	Meleagris_gallopavo
ENSIPUG00000023450	upf3a	55	71.937	ENSMOCG00000000550	Upf3a	50	73.034	Microtus_ochrogaster
ENSIPUG00000023450	upf3a	99	76.483	ENSMMOG00000019751	upf3a	98	76.483	Mola_mola
ENSIPUG00000023450	upf3a	90	66.901	ENSMODG00000003159	UPF3A	99	67.371	Monodelphis_domestica
ENSIPUG00000023450	upf3a	82	59.788	MGP_CAROLIEiJ_G0030848	Upf3a	88	59.788	Mus_caroli
ENSIPUG00000023450	upf3a	82	59.259	ENSMUSG00000038398	Upf3a	88	59.259	Mus_musculus
ENSIPUG00000023450	upf3a	82	60.630	MGP_PahariEiJ_G0021311	Upf3a	88	60.630	Mus_pahari
ENSIPUG00000023450	upf3a	82	58.995	MGP_SPRETEiJ_G0031958	Upf3a	88	58.995	Mus_spretus
ENSIPUG00000023450	upf3a	95	55.556	ENSMPUG00000009139	UPF3A	96	55.556	Mustela_putorius_furo
ENSIPUG00000023450	upf3a	89	59.346	ENSMLUG00000015905	UPF3A	99	59.346	Myotis_lucifugus
ENSIPUG00000023450	upf3a	82	58.245	ENSNGAG00000019314	Upf3a	89	57.937	Nannospalax_galili
ENSIPUG00000023450	upf3a	99	80.702	ENSNBRG00000000828	upf3a	98	80.879	Neolamprologus_brichardi
ENSIPUG00000023450	upf3a	93	55.654	ENSNLEG00000007563	UPF3A	99	53.138	Nomascus_leucogenys
ENSIPUG00000023450	upf3a	99	80.786	ENSONIG00000006817	upf3a	98	80.963	Oreochromis_niloticus
ENSIPUG00000023450	upf3a	78	57.493	ENSOANG00000006985	-	96	56.989	Ornithorhynchus_anatinus
ENSIPUG00000023450	upf3a	100	75.161	ENSORLG00000010911	upf3a	99	75.161	Oryzias_latipes
ENSIPUG00000023450	upf3a	83	42.823	ENSORLG00020003758	upf3b	61	60.428	Oryzias_latipes_hni
ENSIPUG00000023450	upf3a	100	74.730	ENSORLG00020014317	upf3a	99	74.730	Oryzias_latipes_hni
ENSIPUG00000023450	upf3a	100	75.378	ENSORLG00015017339	upf3a	58	75.378	Oryzias_latipes_hsok
ENSIPUG00000023450	upf3a	100	76.242	ENSOMEG00000014425	upf3a	99	76.242	Oryzias_melastigma
ENSIPUG00000023450	upf3a	73	62.571	ENSOGAG00000004788	UPF3A	83	62.751	Otolemur_garnettii
ENSIPUG00000023450	upf3a	90	56.265	ENSOARG00000009004	UPF3A	88	56.738	Ovis_aries
ENSIPUG00000023450	upf3a	91	55.479	ENSPPAG00000042267	UPF3A	95	53.978	Pan_paniscus
ENSIPUG00000023450	upf3a	91	57.631	ENSPPRG00000025062	UPF3A	96	56.344	Panthera_pardus
ENSIPUG00000023450	upf3a	93	54.803	ENSPTRG00000006073	UPF3A	99	53.402	Pan_troglodytes
ENSIPUG00000023450	upf3a	83	48.168	ENSPTRG00000041835	-	87	44.503	Pan_troglodytes
ENSIPUG00000023450	upf3a	89	44.737	ENSPTRG00000051640	-	98	41.798	Pan_troglodytes
ENSIPUG00000023450	upf3a	83	48.974	ENSPTRG00000041187	-	87	45.641	Pan_troglodytes
ENSIPUG00000023450	upf3a	84	49.878	ENSPANG00000000900	UPF3B	77	70.909	Papio_anubis
ENSIPUG00000023450	upf3a	92	56.532	ENSPANG00000004346	UPF3A	95	56.532	Papio_anubis
ENSIPUG00000023450	upf3a	91	49.892	ENSPKIG00000019226	upf3b	93	67.105	Paramormyrops_kingsleyae
ENSIPUG00000023450	upf3a	100	75.000	ENSPKIG00000004422	upf3a	100	75.000	Paramormyrops_kingsleyae
ENSIPUG00000023450	upf3a	89	66.746	ENSPSIG00000007468	UPF3A	99	66.746	Pelodiscus_sinensis
ENSIPUG00000023450	upf3a	99	77.311	ENSPMGG00000012696	upf3a	98	77.311	Periophthalmus_magnuspinnatus
ENSIPUG00000023450	upf3a	82	59.733	ENSPEMG00000019968	-	88	59.733	Peromyscus_maniculatus_bairdii
ENSIPUG00000023450	upf3a	84	49.254	ENSPCIG00000028914	UPF3B	84	49.751	Phascolarctos_cinereus
ENSIPUG00000023450	upf3a	81	67.811	ENSPCIG00000019590	-	88	71.429	Phascolarctos_cinereus
ENSIPUG00000023450	upf3a	100	77.970	ENSPFOG00000013222	upf3a	99	77.970	Poecilia_formosa
ENSIPUG00000023450	upf3a	99	77.632	ENSPLAG00000011960	upf3a	99	77.632	Poecilia_latipinna
ENSIPUG00000023450	upf3a	100	75.519	ENSPMEG00000000836	upf3a	99	75.519	Poecilia_mexicana
ENSIPUG00000023450	upf3a	93	55.556	ENSPPYG00000005536	UPF3A	96	55.556	Pongo_abelii
ENSIPUG00000023450	upf3a	84	53.902	ENSPCOG00000021960	UPF3B	51	71.341	Propithecus_coquereli
ENSIPUG00000023450	upf3a	99	53.265	ENSPVAG00000005656	UPF3A	99	52.857	Pteropus_vampyrus
ENSIPUG00000023450	upf3a	83	44.337	ENSPNYG00000009846	upf3b	95	43.197	Pundamilia_nyererei
ENSIPUG00000023450	upf3a	99	77.848	ENSPNYG00000011289	upf3a	98	78.013	Pundamilia_nyererei
ENSIPUG00000023450	upf3a	85	53.555	ENSPNAG00000021528	upf3b	55	75.610	Pygocentrus_nattereri
ENSIPUG00000023450	upf3a	100	89.834	ENSPNAG00000019532	upf3a	100	89.834	Pygocentrus_nattereri
ENSIPUG00000023450	upf3a	73	62.687	ENSRNOG00000017397	Upf3a	82	62.687	Rattus_norvegicus
ENSIPUG00000023450	upf3a	85	58.929	ENSRBIG00000034007	UPF3A	95	56.115	Rhinopithecus_bieti
ENSIPUG00000023450	upf3a	83	60.263	ENSRROG00000012212	UPF3A	81	60.263	Rhinopithecus_roxellana
ENSIPUG00000023450	upf3a	81	53.947	ENSSBOG00000029989	UPF3A	83	53.947	Saimiri_boliviensis_boliviensis
ENSIPUG00000023450	upf3a	84	54.279	ENSSBOG00000019740	UPF3B	78	71.779	Saimiri_boliviensis_boliviensis
ENSIPUG00000023450	upf3a	86	68.719	ENSSHAG00000009895	UPF3A	96	68.447	Sarcophilus_harrisii
ENSIPUG00000023450	upf3a	100	70.678	ENSSFOG00015021851	upf3a	100	69.079	Scleropages_formosus
ENSIPUG00000023450	upf3a	92	51.111	ENSSMAG00000012913	upf3b	94	44.469	Scophthalmus_maximus
ENSIPUG00000023450	upf3a	100	72.912	ENSSMAG00000003858	upf3a	99	74.134	Scophthalmus_maximus
ENSIPUG00000023450	upf3a	99	78.814	ENSSDUG00000009680	upf3a	98	78.814	Seriola_dumerili
ENSIPUG00000023450	upf3a	99	81.579	ENSSLDG00000009700	upf3a	98	81.758	Seriola_lalandi_dorsalis
ENSIPUG00000023450	upf3a	80	51.181	ENSSARG00000007262	UPF3A	92	49.869	Sorex_araneus
ENSIPUG00000023450	upf3a	100	80.130	ENSSPAG00000007938	upf3a	99	80.130	Stegastes_partitus
ENSIPUG00000023450	upf3a	51	70.492	ENSSPAG00000009989	upf3b	93	45.116	Stegastes_partitus
ENSIPUG00000023450	upf3a	83	59.079	ENSSSCG00000024679	UPF3A	89	54.911	Sus_scrofa
ENSIPUG00000023450	upf3a	84	69.773	ENSTGUG00000009493	UPF3A	99	69.949	Taeniopygia_guttata
ENSIPUG00000023450	upf3a	99	78.070	ENSTRUG00000012730	upf3a	99	78.070	Takifugu_rubripes
ENSIPUG00000023450	upf3a	85	73.096	ENSTNIG00000014973	upf3a	100	72.589	Tetraodon_nigroviridis
ENSIPUG00000023450	upf3a	75	56.022	ENSTTRG00000015414	UPF3A	74	56.022	Tursiops_truncatus
ENSIPUG00000023450	upf3a	84	47.922	ENSUAMG00000024565	UPF3B	66	68.116	Ursus_americanus
ENSIPUG00000023450	upf3a	83	58.205	ENSVPAG00000003525	UPF3A	95	58.462	Vicugna_pacos
ENSIPUG00000023450	upf3a	84	46.040	ENSVVUG00000011594	UPF3B	77	70.909	Vulpes_vulpes
ENSIPUG00000023450	upf3a	86	57.740	ENSVVUG00000013538	UPF3A	82	57.740	Vulpes_vulpes
ENSIPUG00000023450	upf3a	91	56.338	ENSXETG00000002572	upf3a	100	56.338	Xenopus_tropicalis
ENSIPUG00000023450	upf3a	84	47.901	ENSXETG00000007440	upf3b	71	73.171	Xenopus_tropicalis
ENSIPUG00000023450	upf3a	100	78.402	ENSXMAG00000013452	upf3a	99	78.402	Xiphophorus_maculatus