EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSIPUG00000023488 (Gene tree)
Gene ID
100304904
Gene Symbol
cpsf3
Alias
si:dkey-81b15.1|wu:fc32f10|zgc:101655
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Ictalurus_punctatus
Status
putative
Strand
Plus strand
Length
7504 bases
Position
chr25:18006698-18014201
Accession
100304904
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSIPUP00000034968CPSF73-100_CPF11718.81.8e-5411
ENSIPUP00000034987CPSF73-100_CPF11718.85.3e-4912
ENSIPUP00000034987CPSF73-100_CPF11718.85.3e-4922
ENSIPUP00000034975CPSF73-100_CPF11718.84.4e-4811
ENSIPUP00000034987Beta-CaspPF10996.88.1e-3411
ENSIPUP00000034968Beta-CaspPF10996.88.9e-3411
ENSIPUP00000034975Beta-CaspPF10996.81e-3311
ENSIPUP00000034968Lactamase_BPF00753.271.9e-1811
ENSIPUP00000034975Lactamase_BPF00753.272.1e-1811
ENSIPUP00000034987Lactamase_BPF00753.274.5e-0811
ENSIPUP00000034987RMMBLPF07521.123.8e-2111
ENSIPUP00000034968RMMBLPF07521.124.4e-2111
ENSIPUP00000034975RMMBLPF07521.129e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSIPUT00000036364-1899-ENSIPUP00000034987632 (aa)--
ENSIPUT00000036345-2419XM_017455830ENSIPUP00000034968690 (aa)XP_017311319A0A2D0PZ44
ENSIPUT00000036351-2563-ENSIPUP00000034975738 (aa)--
Gene Model
Click here to download ENSIPUG00000023488's gene model file
Pathways
Pathway IDPathway NameSource
ipu03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000023488's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSIPUG00000023488cpsf37436.260ENSIPUG00000022761cpsf3l8636.260
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSIPUG00000023488cpsf39887.059ENSG00000119203CPSF310099.265Homo_sapiens
ENSIPUG00000023488cpsf39988.227ENSAPOG00000022087cpsf39988.227Acanthochromis_polyacanthus
ENSIPUG00000023488cpsf37595.736ENSAPOG00000012241CPSF39295.736Acanthochromis_polyacanthus
ENSIPUG00000023488cpsf39887.206ENSAMEG00000008493CPSF39987.206Ailuropoda_melanoleuca
ENSIPUG00000023488cpsf310086.813ENSACIG00000023663CPSF310085.449Amphilophus_citrinellus
ENSIPUG00000023488cpsf39985.331ENSACIG00000009846cpsf39984.858Amphilophus_citrinellus
ENSIPUG00000023488cpsf310089.565ENSAOCG00000010077CPSF310089.565Amphiprion_ocellaris
ENSIPUG00000023488cpsf39988.227ENSAOCG00000022056cpsf39692.833Amphiprion_ocellaris
ENSIPUG00000023488cpsf39988.372ENSAPEG00000019526cpsf39989.802Amphiprion_percula
ENSIPUG00000023488cpsf310089.565ENSAPEG00000021167CPSF310089.565Amphiprion_percula
ENSIPUG00000023488cpsf39987.936ENSATEG00000003959cpsf39987.936Anabas_testudineus
ENSIPUG00000023488cpsf310085.362ENSATEG00000014525CPSF310085.362Anabas_testudineus
ENSIPUG00000023488cpsf39786.438ENSAPLG00000006941CPSF39886.438Anas_platyrhynchos
ENSIPUG00000023488cpsf39981.905ENSACAG00000001759CPSF39984.252Anolis_carolinensis
ENSIPUG00000023488cpsf39882.353ENSANAG00000031254CPSF39982.759Aotus_nancymaae
ENSIPUG00000023488cpsf39985.601ENSACLG00000014484cpsf39987.801Astatotilapia_calliptera
ENSIPUG00000023488cpsf310086.656ENSACLG00000018846CPSF310085.449Astatotilapia_calliptera
ENSIPUG00000023488cpsf310092.754ENSAMXG00000004786cpsf310092.754Astyanax_mexicanus
ENSIPUG00000023488cpsf39887.206ENSBTAG00000019735CPSF39987.206Bos_taurus
ENSIPUG00000023488cpsf38658.814WBGene00013460cpsf-38658.814Caenorhabditis_elegans
ENSIPUG00000023488cpsf39886.912ENSCJAG00000006276CPSF39986.912Callithrix_jacchus
ENSIPUG00000023488cpsf39887.206ENSCAFG00000003375CPSF39587.206Canis_familiaris
ENSIPUG00000023488cpsf38988.636ENSCAFG00020026799CPSF39988.636Canis_lupus_dingo
ENSIPUG00000023488cpsf39887.206ENSCHIG00000013973CPSF39987.206Capra_hircus
ENSIPUG00000023488cpsf39887.059ENSTSYG00000002967CPSF39987.059Carlito_syrichta
ENSIPUG00000023488cpsf39686.787ENSCAPG00000013851CPSF39986.787Cavia_aperea
ENSIPUG00000023488cpsf39886.912ENSCPOG00000011299CPSF39986.912Cavia_porcellus
ENSIPUG00000023488cpsf39886.912ENSCCAG00000036730CPSF39986.912Cebus_capucinus
ENSIPUG00000023488cpsf39885.000ENSCATG00000014770CPSF39991.334Cercocebus_atys
ENSIPUG00000023488cpsf39886.912ENSCLAG00000002727CPSF39986.912Chinchilla_lanigera
ENSIPUG00000023488cpsf39879.118ENSCSAG00000007125CPSF39979.118Chlorocebus_sabaeus
ENSIPUG00000023488cpsf385100.000ENSCHOG00000000180CPSF38562.917Choloepus_hoffmanni
ENSIPUG00000023488cpsf39985.942ENSCPBG00000014074CPSF39985.942Chrysemys_picta_bellii
ENSIPUG00000023488cpsf39867.007ENSCING00000007214-9867.007Ciona_intestinalis
ENSIPUG00000023488cpsf39876.788ENSCANG00000034435CPSF39976.788Colobus_angolensis_palliatus
ENSIPUG00000023488cpsf39886.618ENSCGRG00001013134Cpsf39986.618Cricetulus_griseus_chok1gshd
ENSIPUG00000023488cpsf39886.618ENSCGRG00000018319Cpsf39986.618Cricetulus_griseus_crigri
ENSIPUG00000023488cpsf310088.712ENSCSEG00000002021CPSF310088.717Cynoglossus_semilaevis
ENSIPUG00000023488cpsf35074.121ENSCVAG00000022039-9474.448Cyprinodon_variegatus
ENSIPUG00000023488cpsf310088.696ENSCVAG00000015067CPSF310088.696Cyprinodon_variegatus
ENSIPUG00000023488cpsf310091.304ENSDARG00000027649cpsf310091.304Danio_rerio
ENSIPUG00000023488cpsf39885.756ENSDNOG00000008940CPSF39585.756Dasypus_novemcinctus
ENSIPUG00000023488cpsf39487.500ENSDORG00000014263Cpsf39987.500Dipodomys_ordii
ENSIPUG00000023488cpsf39966.618FBgn0261065Cpsf739966.618Drosophila_melanogaster
ENSIPUG00000023488cpsf39475.617ENSETEG00000003893CPSF39975.617Echinops_telfairi
ENSIPUG00000023488cpsf39974.789ENSEBUG00000009018cpsf39975.352Eptatretus_burgeri
ENSIPUG00000023488cpsf39887.206ENSEASG00005003970CPSF39987.206Equus_asinus_asinus
ENSIPUG00000023488cpsf39887.206ENSECAG00000019911CPSF39988.418Equus_caballus
ENSIPUG00000023488cpsf39871.912ENSEEUG00000015422CPSF39971.912Erinaceus_europaeus
ENSIPUG00000023488cpsf39991.715ENSELUG00000013775cpsf39991.715Esox_lucius
ENSIPUG00000023488cpsf39887.206ENSFCAG00000007852CPSF39987.206Felis_catus
ENSIPUG00000023488cpsf39982.520ENSFALG00000006572CPSF39986.068Ficedula_albicollis
ENSIPUG00000023488cpsf39886.303ENSFDAG00000006317CPSF39986.303Fukomys_damarensis
ENSIPUG00000023488cpsf36367.073ENSFHEG00000012186CPSF310069.024Fundulus_heteroclitus
ENSIPUG00000023488cpsf39987.064ENSFHEG00000014774cpsf39987.064Fundulus_heteroclitus
ENSIPUG00000023488cpsf310087.391ENSGMOG00000003157cpsf310087.391Gadus_morhua
ENSIPUG00000023488cpsf39985.901ENSGALG00000016424CPSF39985.901Gallus_gallus
ENSIPUG00000023488cpsf39984.810ENSGAFG00000019449cpsf39984.810Gambusia_affinis
ENSIPUG00000023488cpsf310088.116ENSGAFG00000008016CPSF310088.116Gambusia_affinis
ENSIPUG00000023488cpsf37379.872ENSGAGG00000025583CPSF39381.799Gopherus_agassizii
ENSIPUG00000023488cpsf39884.892ENSGGOG00000001757CPSF39196.559Gorilla_gorilla
ENSIPUG00000023488cpsf39987.645ENSHBUG00000001188cpsf39987.645Haplochromis_burtoni
ENSIPUG00000023488cpsf36381.095ENSHBUG00000014332CPSF310082.222Haplochromis_burtoni
ENSIPUG00000023488cpsf39886.303ENSHGLG00000000666CPSF39886.303Heterocephalus_glaber_female
ENSIPUG00000023488cpsf39886.303ENSHGLG00100007765CPSF39886.303Heterocephalus_glaber_male
ENSIPUG00000023488cpsf39988.099ENSHCOG00000015957CPSF39988.099Hippocampus_comes
ENSIPUG00000023488cpsf39986.502ENSHCOG00000007251cpsf39986.502Hippocampus_comes
ENSIPUG00000023488cpsf39887.059ENSSTOG00000004476CPSF39987.059Ictidomys_tridecemlineatus
ENSIPUG00000023488cpsf39886.324ENSJJAG00000023415Cpsf39986.324Jaculus_jaculus
ENSIPUG00000023488cpsf310088.986ENSKMAG00000007317CPSF310088.986Kryptolebias_marmoratus
ENSIPUG00000023488cpsf39986.919ENSKMAG00000002806cpsf39986.919Kryptolebias_marmoratus
ENSIPUG00000023488cpsf39590.122ENSLBEG00000013492CPSF39990.274Labrus_bergylta
ENSIPUG00000023488cpsf39981.541ENSLBEG00000020569cpsf39285.804Labrus_bergylta
ENSIPUG00000023488cpsf35880.697ENSLBEG00000015018-9982.888Labrus_bergylta
ENSIPUG00000023488cpsf310080.174ENSLACG00000008308CPSF310080.174Latimeria_chalumnae
ENSIPUG00000023488cpsf310088.600ENSLOCG00000016823cpsf310088.600Lepisosteus_oculatus
ENSIPUG00000023488cpsf39885.567ENSLAFG00000009467CPSF39985.567Loxodonta_africana
ENSIPUG00000023488cpsf39886.912ENSMFAG00000001339CPSF39493.750Macaca_fascicularis
ENSIPUG00000023488cpsf39982.992ENSMMUG00000018038CPSF39293.750Macaca_mulatta
ENSIPUG00000023488cpsf39096.800ENSMNEG00000039447CPSF39996.800Macaca_nemestrina
ENSIPUG00000023488cpsf39887.059ENSMLEG00000026825CPSF39296.352Mandrillus_leucophaeus
ENSIPUG00000023488cpsf310087.127ENSMAMG00000008835CPSF310087.342Mastacembelus_armatus
ENSIPUG00000023488cpsf39986.483ENSMAMG00000003076cpsf39986.483Mastacembelus_armatus
ENSIPUG00000023488cpsf310088.986ENSMZEG00005006258CPSF310088.986Maylandia_zebra
ENSIPUG00000023488cpsf39987.645ENSMZEG00005014358cpsf39987.645Maylandia_zebra
ENSIPUG00000023488cpsf39686.486ENSMGAG00000013995CPSF39986.486Meleagris_gallopavo
ENSIPUG00000023488cpsf35974.803ENSMAUG00000000166Cpsf39977.067Mesocricetus_auratus
ENSIPUG00000023488cpsf39882.405ENSMICG00000002363CPSF39982.405Microcebus_murinus
ENSIPUG00000023488cpsf39883.088ENSMOCG00000020067Cpsf39488.293Microtus_ochrogaster
ENSIPUG00000023488cpsf37879.078ENSMMOG00000011923CPSF38579.433Mola_mola
ENSIPUG00000023488cpsf39981.541ENSMMOG00000018212CPSF39882.919Mola_mola
ENSIPUG00000023488cpsf39885.444ENSMODG00000014703CPSF39985.444Monodelphis_domestica
ENSIPUG00000023488cpsf39684.039ENSMALG00000011474CPSF310084.555Monopterus_albus
ENSIPUG00000023488cpsf39988.081ENSMALG00000016416cpsf39988.081Monopterus_albus
ENSIPUG00000023488cpsf39886.618MGP_CAROLIEiJ_G0017640Cpsf39986.618Mus_caroli
ENSIPUG00000023488cpsf39886.618ENSMUSG00000054309Cpsf39697.034Mus_musculus
ENSIPUG00000023488cpsf39886.471MGP_PahariEiJ_G0029397Cpsf39986.471Mus_pahari
ENSIPUG00000023488cpsf39886.618MGP_SPRETEiJ_G0018481Cpsf39986.618Mus_spretus
ENSIPUG00000023488cpsf39887.187ENSMPUG00000013213CPSF39987.187Mustela_putorius_furo
ENSIPUG00000023488cpsf39886.784ENSMLUG00000010636CPSF39986.784Myotis_lucifugus
ENSIPUG00000023488cpsf39886.618ENSNGAG00000019836Cpsf39986.618Nannospalax_galili
ENSIPUG00000023488cpsf39987.064ENSNBRG00000004770cpsf39987.064Neolamprologus_brichardi
ENSIPUG00000023488cpsf310086.656ENSNBRG00000010525CPSF310085.449Neolamprologus_brichardi
ENSIPUG00000023488cpsf39886.912ENSNLEG00000013359CPSF39196.559Nomascus_leucogenys
ENSIPUG00000023488cpsf39855.882ENSMEUG00000013117-9955.882Notamacropus_eugenii
ENSIPUG00000023488cpsf39878.498ENSOPRG00000008902CPSF39978.498Ochotona_princeps
ENSIPUG00000023488cpsf39887.059ENSODEG00000003129CPSF39987.059Octodon_degus
ENSIPUG00000023488cpsf39987.355ENSONIG00000018812cpsf39987.355Oreochromis_niloticus
ENSIPUG00000023488cpsf38883.304ENSOANG00000008577CPSF39984.725Ornithorhynchus_anatinus
ENSIPUG00000023488cpsf39887.059ENSOCUG00000003728CPSF39987.059Oryctolagus_cuniculus
ENSIPUG00000023488cpsf39985.901ENSORLG00000018854cpsf39985.901Oryzias_latipes
ENSIPUG00000023488cpsf39985.756ENSORLG00020013331cpsf39985.756Oryzias_latipes_hni
ENSIPUG00000023488cpsf39985.901ENSORLG00015011017cpsf39985.901Oryzias_latipes_hsok
ENSIPUG00000023488cpsf39986.192ENSOMEG00000010647cpsf39586.192Oryzias_melastigma
ENSIPUG00000023488cpsf39876.912ENSOGAG00000001680CPSF39976.912Otolemur_garnettii
ENSIPUG00000023488cpsf39887.206ENSOARG00000015073CPSF39987.206Ovis_aries
ENSIPUG00000023488cpsf39887.059ENSPPAG00000042457CPSF39196.559Pan_paniscus
ENSIPUG00000023488cpsf39886.912ENSPPRG00000016790CPSF39986.912Panthera_pardus
ENSIPUG00000023488cpsf39887.040ENSPTIG00000003920CPSF39987.040Panthera_tigris_altaica
ENSIPUG00000023488cpsf39887.059ENSPTRG00000011638CPSF39196.559Pan_troglodytes
ENSIPUG00000023488cpsf39886.912ENSPANG00000016798CPSF39493.750Papio_anubis
ENSIPUG00000023488cpsf310090.725ENSPKIG00000023646cpsf310090.725Paramormyrops_kingsleyae
ENSIPUG00000023488cpsf39885.316ENSPSIG00000016144CPSF39985.316Pelodiscus_sinensis
ENSIPUG00000023488cpsf36379.551ENSPMGG00000015311CPSF310081.235Periophthalmus_magnuspinnatus
ENSIPUG00000023488cpsf39981.300ENSPMGG00000006141-9981.300Periophthalmus_magnuspinnatus
ENSIPUG00000023488cpsf39886.618ENSPEMG00000017668Cpsf39986.618Peromyscus_maniculatus_bairdii
ENSIPUG00000023488cpsf37988.440ENSPMAG00000004841cpsf310088.440Petromyzon_marinus
ENSIPUG00000023488cpsf39686.186ENSPCIG00000009823CPSF39886.810Phascolarctos_cinereus
ENSIPUG00000023488cpsf310087.101ENSPFOG00000015922cpsf310087.101Poecilia_formosa
ENSIPUG00000023488cpsf310087.826ENSPFOG00000010418-10087.826Poecilia_formosa
ENSIPUG00000023488cpsf310087.101ENSPLAG00000000882cpsf310087.101Poecilia_latipinna
ENSIPUG00000023488cpsf36379.259ENSPLAG00000021300-10081.481Poecilia_latipinna
ENSIPUG00000023488cpsf310087.246ENSPMEG00000018309cpsf310087.246Poecilia_mexicana
ENSIPUG00000023488cpsf310082.609ENSPREG00000004482CPSF310082.609Poecilia_reticulata
ENSIPUG00000023488cpsf39985.174ENSPREG00000014875cpsf39984.945Poecilia_reticulata
ENSIPUG00000023488cpsf39882.794ENSPPYG00000012666CPSF39982.794Pongo_abelii
ENSIPUG00000023488cpsf38565.283ENSPCAG00000015042CPSF39065.283Procavia_capensis
ENSIPUG00000023488cpsf38689.247ENSPCOG00000023016CPSF39789.247Propithecus_coquereli
ENSIPUG00000023488cpsf39887.040ENSPVAG00000005324CPSF39987.040Pteropus_vampyrus
ENSIPUG00000023488cpsf39987.645ENSPNYG00000004405cpsf39987.645Pundamilia_nyererei
ENSIPUG00000023488cpsf38692.661ENSPNYG00000021047CPSF39192.661Pundamilia_nyererei
ENSIPUG00000023488cpsf310093.043ENSPNAG00000023060cpsf310093.043Pygocentrus_nattereri
ENSIPUG00000023488cpsf39886.598ENSRNOG00000052418Cpsf39986.598Rattus_norvegicus
ENSIPUG00000023488cpsf39882.206ENSRBIG00000041615CPSF39983.127Rhinopithecus_bieti
ENSIPUG00000023488cpsf39887.059ENSRROG00000033792CPSF39987.059Rhinopithecus_roxellana
ENSIPUG00000023488cpsf38442.727YLR277CYSH18542.727Saccharomyces_cerevisiae
ENSIPUG00000023488cpsf39683.582ENSSBOG00000027263CPSF39783.582Saimiri_boliviensis_boliviensis
ENSIPUG00000023488cpsf39886.471ENSSHAG00000007024CPSF39986.471Sarcophilus_harrisii
ENSIPUG00000023488cpsf310090.435ENSSFOG00015002108cpsf310090.435Scleropages_formosus
ENSIPUG00000023488cpsf39588.537ENSSMAG00000020534CPSF39788.571Scophthalmus_maximus
ENSIPUG00000023488cpsf39988.372ENSSDUG00000002828cpsf39788.372Seriola_dumerili
ENSIPUG00000023488cpsf310089.565ENSSDUG00000018498CPSF310089.565Seriola_dumerili
ENSIPUG00000023488cpsf39988.372ENSSLDG00000008469cpsf39690.000Seriola_lalandi_dorsalis
ENSIPUG00000023488cpsf310089.565ENSSLDG00000005234CPSF310089.565Seriola_lalandi_dorsalis
ENSIPUG00000023488cpsf38983.208ENSSARG00000005186CPSF39083.208Sorex_araneus
ENSIPUG00000023488cpsf39683.881ENSSPUG00000015525CPSF39783.881Sphenodon_punctatus
ENSIPUG00000023488cpsf310089.130ENSSPAG00000002906CPSF310089.130Stegastes_partitus
ENSIPUG00000023488cpsf39987.645ENSSPAG00000018579cpsf39987.645Stegastes_partitus
ENSIPUG00000023488cpsf39887.206ENSSSCG00000020799CPSF39987.206Sus_scrofa
ENSIPUG00000023488cpsf39886.471ENSTGUG00000013016CPSF39986.471Taeniopygia_guttata
ENSIPUG00000023488cpsf39985.901ENSTRUG00000007030cpsf39885.901Takifugu_rubripes
ENSIPUG00000023488cpsf36374.442ENSTRUG00000013905CPSF310074.447Takifugu_rubripes
ENSIPUG00000023488cpsf38491.160ENSTBEG00000002707CPSF38491.160Tupaia_belangeri
ENSIPUG00000023488cpsf38674.209ENSTTRG00000000861CPSF38774.209Tursiops_truncatus
ENSIPUG00000023488cpsf39587.768ENSUAMG00000007535CPSF39487.768Ursus_americanus
ENSIPUG00000023488cpsf39983.307ENSUMAG00000003676CPSF39986.687Ursus_maritimus
ENSIPUG00000023488cpsf39286.593ENSVPAG00000008041CPSF310086.593Vicugna_pacos
ENSIPUG00000023488cpsf39887.206ENSVVUG00000002194CPSF39987.206Vulpes_vulpes
ENSIPUG00000023488cpsf39984.470ENSXETG00000008263cpsf39984.470Xenopus_tropicalis
ENSIPUG00000023488cpsf39987.083ENSXCOG00000019695cpsf39987.083Xiphophorus_couchianus
ENSIPUG00000023488cpsf35877.151ENSXCOG00000000957-8779.570Xiphophorus_couchianus
ENSIPUG00000023488cpsf310088.116ENSXMAG00000027291CPSF310088.116Xiphophorus_maculatus
ENSIPUG00000023488cpsf310086.957ENSXMAG00000009784cpsf310086.957Xiphophorus_maculatus

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