EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000023583 (Gene tree)
Gene ID: -
Gene Symbol: PABPN1L
Alias: ePABP2
Full Name: poly(A) binding protein nuclear 1 like%2C cytoplasmic
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 36866 bases
Position: chr27:12038689-12075554
Accession: 108259598
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000035133	RRM_1	PF00076.22	1.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000036512	PABPN1L-201	237	-	ENSIPUP00000035130	79 (aa)	-	-
ENSIPUT00000036515	PABPN1L-202	1199	XM_017459211	ENSIPUP00000035133	194 (aa)	XP_017314700	-

Gene Model

Click here to download ENSIPUG00000023583's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000023583's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000023583	PABPN1L	85	62.573	ENSIPUG00000000180	-	62	64.828
ENSIPUG00000023583	PABPN1L	85	61.404	ENSIPUG00000008085	PABPN1	60	64.828

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000023583	PABPN1L	90	54.737	ENSG00000205022	PABPN1L	67	52.880	Homo_sapiens
ENSIPUG00000023583	PABPN1L	89	65.591	ENSAPOG00000000685	PABPN1L	59	63.978	Acanthochromis_polyacanthus
ENSIPUG00000023583	PABPN1L	88	67.429	ENSACIG00000021400	PABPN1L	75	73.333	Amphilophus_citrinellus
ENSIPUG00000023583	PABPN1L	87	63.536	ENSAOCG00000019844	PABPN1L	67	64.088	Amphiprion_ocellaris
ENSIPUG00000023583	PABPN1L	87	63.536	ENSAPEG00000019534	PABPN1L	67	64.088	Amphiprion_percula
ENSIPUG00000023583	PABPN1L	91	64.921	ENSATEG00000011646	PABPN1L	74	63.351	Anabas_testudineus
ENSIPUG00000023583	PABPN1L	62	57.851	ENSAPLG00000009174	PABPN1L	76	67.033	Anas_platyrhynchos
ENSIPUG00000023583	PABPN1L	89	60.112	ENSACAG00000013250	PABPN1L	75	61.538	Anolis_carolinensis
ENSIPUG00000023583	PABPN1L	88	54.098	ENSANAG00000038178	PABPN1L	58	56.250	Aotus_nancymaae
ENSIPUG00000023583	PABPN1L	87	68.208	ENSACLG00000025147	PABPN1L	66	66.474	Astatotilapia_calliptera
ENSIPUG00000023583	PABPN1L	95	77.297	ENSAMXG00000010873	PABPN1L	71	76.216	Astyanax_mexicanus
ENSIPUG00000023583	PABPN1L	89	47.399	ENSBTAG00000023752	-	57	47.097	Bos_taurus
ENSIPUG00000023583	PABPN1L	64	61.905	ENSBTAG00000006727	-	61	68.000	Bos_taurus
ENSIPUG00000023583	PABPN1L	88	51.546	ENSCJAG00000045284	PABPN1L	60	50.867	Callithrix_jacchus
ENSIPUG00000023583	PABPN1L	88	55.191	ENSCCAG00000027631	PABPN1L	58	56.875	Cebus_capucinus
ENSIPUG00000023583	PABPN1L	90	54.211	ENSCATG00000031060	PABPN1L	59	50.867	Cercocebus_atys
ENSIPUG00000023583	PABPN1L	76	52.469	ENSCLAG00000000704	PABPN1L	55	50.318	Chinchilla_lanigera
ENSIPUG00000023583	PABPN1L	90	51.759	ENSCSAG00000002881	PABPN1L	61	51.685	Chlorocebus_sabaeus
ENSIPUG00000023583	PABPN1L	73	67.347	ENSCSEG00000001142	pabpn1l	70	61.538	Cynoglossus_semilaevis
ENSIPUG00000023583	PABPN1L	73	66.887	ENSCVAG00000015547	PABPN1L	67	62.983	Cyprinodon_variegatus
ENSIPUG00000023583	PABPN1L	91	51.351	ENSEASG00005000777	PABPN1L	58	54.194	Equus_asinus_asinus
ENSIPUG00000023583	PABPN1L	91	50.259	ENSECAG00000000378	PABPN1L	58	53.548	Equus_caballus
ENSIPUG00000023583	PABPN1L	91	49.451	ENSEEUG00000004747	PABPN1L	52	52.381	Erinaceus_europaeus
ENSIPUG00000023583	PABPN1L	90	69.832	ENSELUG00000018385	PABPN1L	70	69.832	Esox_lucius
ENSIPUG00000023583	PABPN1L	83	54.118	ENSFCAG00000010465	PABPN1L	54	55.333	Felis_catus
ENSIPUG00000023583	PABPN1L	79	54.167	ENSFDAG00000021067	PABPN1L	55	52.903	Fukomys_damarensis
ENSIPUG00000023583	PABPN1L	53	82.524	ENSFHEG00000018295	PABPN1L	66	64.943	Fundulus_heteroclitus
ENSIPUG00000023583	PABPN1L	87	69.274	ENSGMOG00000001475	PABPN1L	67	69.274	Gadus_morhua
ENSIPUG00000023583	PABPN1L	81	57.500	ENSGALG00000006242	PABPN1L	59	70.192	Gallus_gallus
ENSIPUG00000023583	PABPN1L	73	67.550	ENSGAFG00000012565	PABPN1L	67	63.536	Gambusia_affinis
ENSIPUG00000023583	PABPN1L	90	53.684	ENSGGOG00000012670	PABPN1L	56	56.494	Gorilla_gorilla
ENSIPUG00000023583	PABPN1L	87	65.556	ENSHBUG00000002388	PABPN1L	66	65.517	Haplochromis_burtoni
ENSIPUG00000023583	PABPN1L	63	72.131	ENSKMAG00000001112	PABPN1L	63	67.568	Kryptolebias_marmoratus
ENSIPUG00000023583	PABPN1L	73	68.212	ENSLBEG00000011647	PABPN1L	65	63.388	Labrus_bergylta
ENSIPUG00000023583	PABPN1L	90	54.737	ENSMFAG00000002924	PABPN1L	59	51.445	Macaca_fascicularis
ENSIPUG00000023583	PABPN1L	90	55.026	ENSMMUG00000012438	PABPN1L	59	55.280	Macaca_mulatta
ENSIPUG00000023583	PABPN1L	90	54.737	ENSMNEG00000044808	PABPN1L	59	51.445	Macaca_nemestrina
ENSIPUG00000023583	PABPN1L	90	54.211	ENSMLEG00000032667	PABPN1L	59	51.445	Mandrillus_leucophaeus
ENSIPUG00000023583	PABPN1L	87	68.208	ENSMZEG00005002186	PABPN1L	66	66.474	Maylandia_zebra
ENSIPUG00000023583	PABPN1L	93	51.010	ENSMICG00000028179	PABPN1L	68	50.785	Microcebus_murinus
ENSIPUG00000023583	PABPN1L	54	82.692	ENSMMOG00000017714	PABPN1L	58	73.134	Mola_mola
ENSIPUG00000023583	PABPN1L	87	67.241	ENSMALG00000016926	PABPN1L	66	66.092	Monopterus_albus
ENSIPUG00000023583	PABPN1L	69	75.556	ENSNBRG00000017078	PABPN1L	57	73.333	Neolamprologus_brichardi
ENSIPUG00000023583	PABPN1L	84	59.172	ENSOANG00000013901	PABPN1L	66	55.367	Ornithorhynchus_anatinus
ENSIPUG00000023583	PABPN1L	87	69.186	ENSORLG00000026560	PABPN1L	66	67.251	Oryzias_latipes
ENSIPUG00000023583	PABPN1L	87	69.186	ENSORLG00020015068	PABPN1L	66	67.251	Oryzias_latipes_hni
ENSIPUG00000023583	PABPN1L	87	69.186	ENSORLG00015000397	PABPN1L	66	67.251	Oryzias_latipes_hsok
ENSIPUG00000023583	PABPN1L	90	54.211	ENSPPAG00000028866	PABPN1L	58	54.938	Pan_paniscus
ENSIPUG00000023583	PABPN1L	78	53.333	ENSPPRG00000015106	PABPN1L	54	54.000	Panthera_pardus
ENSIPUG00000023583	PABPN1L	78	57.962	ENSPTIG00000015606	PABPN1L	56	57.042	Panthera_tigris_altaica
ENSIPUG00000023583	PABPN1L	90	54.211	ENSPTRG00000031120	PABPN1L	58	54.938	Pan_troglodytes
ENSIPUG00000023583	PABPN1L	90	54.211	ENSPANG00000026039	PABPN1L	56	53.333	Papio_anubis
ENSIPUG00000023583	PABPN1L	83	61.212	ENSPSIG00000003404	PABPN1L	76	61.379	Pelodiscus_sinensis
ENSIPUG00000023583	PABPN1L	69	75.000	ENSPMGG00000013927	PABPN1L	83	68.085	Periophthalmus_magnuspinnatus
ENSIPUG00000023583	PABPN1L	91	50.505	ENSPEMG00000016624	Pabpn1l	56	57.047	Peromyscus_maniculatus_bairdii
ENSIPUG00000023583	PABPN1L	60	66.379	ENSPCIG00000007038	-	67	71.134	Phascolarctos_cinereus
ENSIPUG00000023583	PABPN1L	73	67.550	ENSPFOG00000007001	PABPN1L	67	63.536	Poecilia_formosa
ENSIPUG00000023583	PABPN1L	73	67.550	ENSPLAG00000018431	PABPN1L	67	63.536	Poecilia_latipinna
ENSIPUG00000023583	PABPN1L	73	67.550	ENSPMEG00000009108	PABPN1L	67	63.536	Poecilia_mexicana
ENSIPUG00000023583	PABPN1L	66	71.318	ENSPREG00000022533	PABPN1L	58	73.684	Poecilia_reticulata
ENSIPUG00000023583	PABPN1L	90	53.158	ENSPPYG00000007655	PABPN1L	58	49.711	Pongo_abelii
ENSIPUG00000023583	PABPN1L	94	49.495	ENSPCOG00000024077	PABPN1L	68	49.738	Propithecus_coquereli
ENSIPUG00000023583	PABPN1L	76	56.774	ENSPVAG00000002716	PABPN1L	54	56.667	Pteropus_vampyrus
ENSIPUG00000023583	PABPN1L	87	68.208	ENSPNYG00000004803	PABPN1L	66	66.474	Pundamilia_nyererei
ENSIPUG00000023583	PABPN1L	90	52.105	ENSRBIG00000030740	PABPN1L	59	53.704	Rhinopithecus_bieti
ENSIPUG00000023583	PABPN1L	90	52.632	ENSRROG00000032240	-	59	53.704	Rhinopithecus_roxellana
ENSIPUG00000023583	PABPN1L	90	54.211	ENSRROG00000035483	-	56	57.143	Rhinopithecus_roxellana
ENSIPUG00000023583	PABPN1L	93	52.792	ENSSBOG00000018410	PABPN1L	58	56.250	Saimiri_boliviensis_boliviensis
ENSIPUG00000023583	PABPN1L	87	62.921	ENSSMAG00000021348	PABPN1L	67	62.921	Scophthalmus_maximus
ENSIPUG00000023583	PABPN1L	73	68.874	ENSSDUG00000006986	PABPN1L	67	64.088	Seriola_dumerili
ENSIPUG00000023583	PABPN1L	73	68.874	ENSSLDG00000021845	PABPN1L	67	64.088	Seriola_lalandi_dorsalis
ENSIPUG00000023583	PABPN1L	88	58.382	ENSSPUG00000007031	PABPN1L	63	60.993	Sphenodon_punctatus
ENSIPUG00000023583	PABPN1L	87	64.641	ENSSPAG00000017978	PABPN1L	67	64.088	Stegastes_partitus
ENSIPUG00000023583	PABPN1L	88	47.701	ENSSSCG00000036367	PABPN1L	54	53.642	Sus_scrofa
ENSIPUG00000023583	PABPN1L	73	67.333	ENSTRUG00000024725	PABPN1L	74	63.187	Takifugu_rubripes
ENSIPUG00000023583	PABPN1L	51	83.673	ENSTNIG00000009416	PABPN1L	67	74.219	Tetraodon_nigroviridis
ENSIPUG00000023583	PABPN1L	89	52.486	ENSTTRG00000004691	PABPN1L	56	54.194	Tursiops_truncatus
ENSIPUG00000023583	PABPN1L	76	52.795	ENSXETG00000011258	pabpn1l	54	55.474	Xenopus_tropicalis
ENSIPUG00000023583	PABPN1L	53	82.524	ENSXCOG00000003254	PABPN1L	58	73.684	Xiphophorus_couchianus
ENSIPUG00000023583	PABPN1L	55	81.132	ENSXMAG00000029090	PABPN1L	61	72.794	Xiphophorus_maculatus