EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000023873 (Gene tree)
Gene ID: 108272062
Gene Symbol: r3hdm2
Alias: -
Full Name: R3H domain containing 2
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 80498 bases
Position: chr11:19483577-19564074
Accession: 108272062
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000035627	R3H	PF01424.22	8.2e-11	1	1
ENSIPUP00000035620	R3H	PF01424.22	8.6e-11	1	1
ENSIPUP00000035639	R3H	PF01424.22	9.2e-11	1	1
ENSIPUP00000035634	R3H	PF01424.22	9.2e-11	1	1
ENSIPUP00000035643	R3H	PF01424.22	9.2e-11	1	1
ENSIPUP00000035651	R3H	PF01424.22	9.2e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000037016	-	4011	-	ENSIPUP00000035620	1010 (aa)	-	-
ENSIPUT00000037030	-	5030	XM_017480183	ENSIPUP00000035634	1058 (aa)	XP_017335672	A0A2D0RYW2
ENSIPUT00000037039	-	4760	XM_017480178	ENSIPUP00000035643	1058 (aa)	XP_017335667	A0A2D0RYW2
ENSIPUT00000037035	-	5009	XM_017480196	ENSIPUP00000035639	1051 (aa)	XP_017335685	A0A2D0RYW5
ENSIPUT00000037048	-	4657	XM_017480177	ENSIPUP00000035651	1058 (aa)	XP_017335666	A0A2D0RYW2
ENSIPUT00000037023	-	3901	-	ENSIPUP00000035627	976 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000023873's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000023873's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000023873	r3hdm2	75	63.366	ENSIPUG00000001676	R3HDM1	81	61.875

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000023873	r3hdm2	99	62.195	ENSG00000179912	R3HDM2	97	73.966	Homo_sapiens
ENSIPUG00000023873	r3hdm2	58	37.043	ENSAPOG00000021873	-	50	46.018	Acanthochromis_polyacanthus
ENSIPUG00000023873	r3hdm2	100	75.747	ENSAPOG00000020341	r3hdm2	100	75.656	Acanthochromis_polyacanthus
ENSIPUG00000023873	r3hdm2	95	64.176	ENSAMEG00000004812	R3HDM2	99	61.843	Ailuropoda_melanoleuca
ENSIPUG00000023873	r3hdm2	93	74.703	ENSACIG00000016146	r3hdm2	98	72.754	Amphilophus_citrinellus
ENSIPUG00000023873	r3hdm2	100	76.909	ENSAOCG00000023694	r3hdm2	100	76.817	Amphiprion_ocellaris
ENSIPUG00000023873	r3hdm2	100	77.143	ENSAPEG00000008851	r3hdm2	99	79.203	Amphiprion_percula
ENSIPUG00000023873	r3hdm2	100	74.060	ENSATEG00000025024	r3hdm2	100	77.205	Anabas_testudineus
ENSIPUG00000023873	r3hdm2	98	61.938	ENSACAG00000006388	R3HDM2	99	59.344	Anolis_carolinensis
ENSIPUG00000023873	r3hdm2	99	61.696	ENSANAG00000025397	-	98	73.966	Aotus_nancymaae
ENSIPUG00000023873	r3hdm2	95	61.199	ENSANAG00000031310	-	95	58.051	Aotus_nancymaae
ENSIPUG00000023873	r3hdm2	100	75.916	ENSACLG00000019106	r3hdm2	100	76.007	Astatotilapia_calliptera
ENSIPUG00000023873	r3hdm2	91	78.878	ENSAMXG00000017180	r3hdm2	100	77.413	Astyanax_mexicanus
ENSIPUG00000023873	r3hdm2	96	63.372	ENSBTAG00000018361	R3HDM2	98	73.236	Bos_taurus
ENSIPUG00000023873	r3hdm2	99	61.789	ENSCJAG00000007365	R3HDM2	98	73.966	Callithrix_jacchus
ENSIPUG00000023873	r3hdm2	87	79.019	ENSCAFG00000000215	R3HDM2	99	60.996	Canis_familiaris
ENSIPUG00000023873	r3hdm2	87	79.019	ENSCAFG00020023713	R3HDM2	99	62.361	Canis_lupus_dingo
ENSIPUG00000023873	r3hdm2	95	64.826	ENSCHIG00000014022	R3HDM2	98	73.236	Capra_hircus
ENSIPUG00000023873	r3hdm2	91	71.566	ENSTSYG00000001449	R3HDM2	97	71.566	Carlito_syrichta
ENSIPUG00000023873	r3hdm2	99	63.415	ENSCPOG00000009217	R3HDM2	98	73.966	Cavia_porcellus
ENSIPUG00000023873	r3hdm2	92	63.547	ENSCCAG00000026083	R3HDM2	97	73.966	Cebus_capucinus
ENSIPUG00000023873	r3hdm2	99	63.011	ENSCATG00000036929	R3HDM2	97	73.723	Cercocebus_atys
ENSIPUG00000023873	r3hdm2	99	64.045	ENSCLAG00000011997	R3HDM2	99	62.793	Chinchilla_lanigera
ENSIPUG00000023873	r3hdm2	99	64.259	ENSCSAG00000004911	R3HDM2	99	62.887	Chlorocebus_sabaeus
ENSIPUG00000023873	r3hdm2	77	60.117	ENSCHOG00000005636	R3HDM2	89	61.793	Choloepus_hoffmanni
ENSIPUG00000023873	r3hdm2	95	63.506	ENSCPBG00000013922	R3HDM2	99	60.567	Chrysemys_picta_bellii
ENSIPUG00000023873	r3hdm2	99	62.639	ENSCANG00000043807	R3HDM2	98	73.723	Colobus_angolensis_palliatus
ENSIPUG00000023873	r3hdm2	99	63.261	ENSCGRG00001017324	R3hdm2	99	62.137	Cricetulus_griseus_chok1gshd
ENSIPUG00000023873	r3hdm2	99	63.261	ENSCGRG00000003862	R3hdm2	99	62.137	Cricetulus_griseus_crigri
ENSIPUG00000023873	r3hdm2	100	74.840	ENSCSEG00000010925	r3hdm2	100	74.084	Cynoglossus_semilaevis
ENSIPUG00000023873	r3hdm2	100	76.011	ENSCVAG00000009058	r3hdm2	100	76.011	Cyprinodon_variegatus
ENSIPUG00000023873	r3hdm2	93	78.521	ENSDARG00000102610	r3hdm2	99	78.318	Danio_rerio
ENSIPUG00000023873	r3hdm2	99	64.030	ENSDNOG00000015033	R3HDM2	100	62.434	Dasypus_novemcinctus
ENSIPUG00000023873	r3hdm2	95	59.843	ENSDORG00000011462	R3hdm2	93	60.973	Dipodomys_ordii
ENSIPUG00000023873	r3hdm2	88	78.649	ENSEASG00005007091	R3HDM2	99	63.355	Equus_asinus_asinus
ENSIPUG00000023873	r3hdm2	88	78.649	ENSECAG00000003157	R3HDM2	99	63.355	Equus_caballus
ENSIPUG00000023873	r3hdm2	98	73.840	ENSELUG00000015969	r3hdm2	97	73.352	Esox_lucius
ENSIPUG00000023873	r3hdm2	87	74.286	ENSFCAG00000000192	R3HDM2	98	61.698	Felis_catus
ENSIPUG00000023873	r3hdm2	85	60.089	ENSFALG00000000255	R3HDM2	98	58.423	Ficedula_albicollis
ENSIPUG00000023873	r3hdm2	87	79.019	ENSFDAG00000019385	R3HDM2	99	62.231	Fukomys_damarensis
ENSIPUG00000023873	r3hdm2	100	76.400	ENSFHEG00000016484	r3hdm2	100	76.217	Fundulus_heteroclitus
ENSIPUG00000023873	r3hdm2	95	72.008	ENSGMOG00000007961	r3hdm2	100	72.201	Gadus_morhua
ENSIPUG00000023873	r3hdm2	96	78.125	ENSGALG00000043736	R3HDM2	99	61.264	Gallus_gallus
ENSIPUG00000023873	r3hdm2	50	39.139	ENSGAFG00000015558	-	52	44.828	Gambusia_affinis
ENSIPUG00000023873	r3hdm2	100	76.888	ENSGAFG00000013887	r3hdm2	100	75.316	Gambusia_affinis
ENSIPUG00000023873	r3hdm2	95	75.553	ENSGACG00000006442	r3hdm2	100	76.323	Gasterosteus_aculeatus
ENSIPUG00000023873	r3hdm2	95	62.289	ENSGAGG00000017797	R3HDM2	98	59.459	Gopherus_agassizii
ENSIPUG00000023873	r3hdm2	99	63.104	ENSGGOG00000015007	R3HDM2	97	73.966	Gorilla_gorilla
ENSIPUG00000023873	r3hdm2	89	58.305	ENSHGLG00000010421	-	92	56.433	Heterocephalus_glaber_female
ENSIPUG00000023873	r3hdm2	99	63.415	ENSHGLG00000010434	-	99	62.429	Heterocephalus_glaber_female
ENSIPUG00000023873	r3hdm2	99	63.321	ENSHGLG00100004183	-	99	62.335	Heterocephalus_glaber_male
ENSIPUG00000023873	r3hdm2	95	57.867	ENSHGLG00100018871	-	92	73.098	Heterocephalus_glaber_male
ENSIPUG00000023873	r3hdm2	100	74.766	ENSHCOG00000001142	r3hdm2	97	74.953	Hippocampus_comes
ENSIPUG00000023873	r3hdm2	96	60.293	ENSSTOG00000013424	R3HDM2	93	59.096	Ictidomys_tridecemlineatus
ENSIPUG00000023873	r3hdm2	99	63.850	ENSJJAG00000010001	R3hdm2	99	62.570	Jaculus_jaculus
ENSIPUG00000023873	r3hdm2	100	75.827	ENSKMAG00000012695	r3hdm2	99	73.840	Kryptolebias_marmoratus
ENSIPUG00000023873	r3hdm2	100	74.885	ENSLBEG00000013115	r3hdm2	96	74.816	Labrus_bergylta
ENSIPUG00000023873	r3hdm2	95	62.694	ENSLACG00000019064	r3hdm2	100	62.319	Latimeria_chalumnae
ENSIPUG00000023873	r3hdm2	99	68.721	ENSLOCG00000005976	r3hdm2	99	68.872	Lepisosteus_oculatus
ENSIPUG00000023873	r3hdm2	99	62.593	ENSLAFG00000006510	R3HDM2	99	61.567	Loxodonta_africana
ENSIPUG00000023873	r3hdm2	99	63.104	ENSMFAG00000036385	R3HDM2	97	73.723	Macaca_fascicularis
ENSIPUG00000023873	r3hdm2	99	62.731	ENSMMUG00000021789	R3HDM2	97	73.723	Macaca_mulatta
ENSIPUG00000023873	r3hdm2	99	63.104	ENSMNEG00000025314	R3HDM2	99	61.746	Macaca_nemestrina
ENSIPUG00000023873	r3hdm2	99	63.104	ENSMLEG00000028915	R3HDM2	97	73.723	Mandrillus_leucophaeus
ENSIPUG00000023873	r3hdm2	100	75.963	ENSMAMG00000009793	r3hdm2	100	75.872	Mastacembelus_armatus
ENSIPUG00000023873	r3hdm2	100	76.335	ENSMZEG00005007319	r3hdm2	100	76.427	Maylandia_zebra
ENSIPUG00000023873	r3hdm2	99	61.049	ENSMICG00000012389	R3HDM2	99	60.150	Microcebus_murinus
ENSIPUG00000023873	r3hdm2	99	64.158	ENSMOCG00000014425	R3hdm2	99	62.453	Microtus_ochrogaster
ENSIPUG00000023873	r3hdm2	95	72.271	ENSMMOG00000007448	r3hdm2	99	71.386	Mola_mola
ENSIPUG00000023873	r3hdm2	92	71.921	ENSMALG00000010211	r3hdm2	99	80.516	Monopterus_albus
ENSIPUG00000023873	r3hdm2	95	64.941	MGP_CAROLIEiJ_G0015896	R3hdm2	99	61.517	Mus_caroli
ENSIPUG00000023873	r3hdm2	99	63.977	ENSMUSG00000025404	R3hdm2	99	62.231	Mus_musculus
ENSIPUG00000023873	r3hdm2	99	63.039	MGP_PahariEiJ_G0031189	R3hdm2	99	62.231	Mus_pahari
ENSIPUG00000023873	r3hdm2	99	63.977	MGP_SPRETEiJ_G0016722	R3hdm2	99	62.231	Mus_spretus
ENSIPUG00000023873	r3hdm2	93	63.627	ENSMPUG00000001818	R3HDM2	96	61.625	Mustela_putorius_furo
ENSIPUG00000023873	r3hdm2	99	62.535	ENSMLUG00000004980	R3HDM2	99	61.418	Myotis_lucifugus
ENSIPUG00000023873	r3hdm2	99	63.884	ENSNGAG00000018800	R3hdm2	99	62.699	Nannospalax_galili
ENSIPUG00000023873	r3hdm2	94	73.710	ENSNBRG00000004483	r3hdm2	99	73.340	Neolamprologus_brichardi
ENSIPUG00000023873	r3hdm2	99	62.918	ENSNLEG00000017351	R3HDM2	98	73.966	Nomascus_leucogenys
ENSIPUG00000023873	r3hdm2	99	54.613	ENSMEUG00000008588	R3HDM2	99	53.242	Notamacropus_eugenii
ENSIPUG00000023873	r3hdm2	99	56.660	ENSOPRG00000013670	R3HDM2	93	56.295	Ochotona_princeps
ENSIPUG00000023873	r3hdm2	100	73.601	ENSONIG00000005075	r3hdm2	100	73.978	Oreochromis_niloticus
ENSIPUG00000023873	r3hdm2	99	62.546	ENSOCUG00000013258	R3HDM2	99	61.935	Oryctolagus_cuniculus
ENSIPUG00000023873	r3hdm2	100	72.439	ENSORLG00000005502	r3hdm2	100	73.436	Oryzias_latipes
ENSIPUG00000023873	r3hdm2	56	35.974	ENSORLG00020019613	-	72	35.439	Oryzias_latipes_hni
ENSIPUG00000023873	r3hdm2	100	74.378	ENSORLG00020017069	r3hdm2	100	74.747	Oryzias_latipes_hni
ENSIPUG00000023873	r3hdm2	100	74.378	ENSORLG00015012735	r3hdm2	100	74.747	Oryzias_latipes_hsok
ENSIPUG00000023873	r3hdm2	100	67.256	ENSOMEG00000018079	r3hdm2	99	67.349	Oryzias_melastigma
ENSIPUG00000023873	r3hdm2	63	32.258	ENSOMEG00000009631	-	82	35.043	Oryzias_melastigma
ENSIPUG00000023873	r3hdm2	63	32.111	ENSOMEG00000016256	-	82	35.043	Oryzias_melastigma
ENSIPUG00000023873	r3hdm2	99	56.552	ENSOGAG00000027966	-	97	67.153	Otolemur_garnettii
ENSIPUG00000023873	r3hdm2	96	62.952	ENSOGAG00000012055	R3HDM2	99	60.056	Otolemur_garnettii
ENSIPUG00000023873	r3hdm2	96	63.417	ENSOARG00000006929	R3HDM2	98	73.236	Ovis_aries
ENSIPUG00000023873	r3hdm2	99	63.290	ENSPPAG00000034395	R3HDM2	97	73.966	Pan_paniscus
ENSIPUG00000023873	r3hdm2	87	79.292	ENSPPRG00000009240	R3HDM2	99	60.337	Panthera_pardus
ENSIPUG00000023873	r3hdm2	87	79.292	ENSPTIG00000008752	R3HDM2	99	60.337	Panthera_tigris_altaica
ENSIPUG00000023873	r3hdm2	99	63.290	ENSPTRG00000046457	R3HDM2	97	73.966	Pan_troglodytes
ENSIPUG00000023873	r3hdm2	95	63.235	ENSPANG00000024002	R3HDM2	96	78.630	Papio_anubis
ENSIPUG00000023873	r3hdm2	100	75.701	ENSPKIG00000003171	r3hdm2	100	74.486	Paramormyrops_kingsleyae
ENSIPUG00000023873	r3hdm2	50	73.651	ENSPSIG00000006954	R3HDM2	78	73.802	Pelodiscus_sinensis
ENSIPUG00000023873	r3hdm2	93	75.553	ENSPMGG00000007061	r3hdm2	99	74.300	Periophthalmus_magnuspinnatus
ENSIPUG00000023873	r3hdm2	99	63.602	ENSPEMG00000015964	R3hdm2	99	61.949	Peromyscus_maniculatus_bairdii
ENSIPUG00000023873	r3hdm2	99	61.646	ENSPCIG00000023841	R3HDM2	99	59.187	Phascolarctos_cinereus
ENSIPUG00000023873	r3hdm2	94	82.271	ENSPFOG00000006077	r3hdm2	93	85.042	Poecilia_formosa
ENSIPUG00000023873	r3hdm2	100	76.654	ENSPLAG00000002971	r3hdm2	100	76.287	Poecilia_latipinna
ENSIPUG00000023873	r3hdm2	100	76.654	ENSPMEG00000005330	r3hdm2	100	76.287	Poecilia_mexicana
ENSIPUG00000023873	r3hdm2	100	76.379	ENSPREG00000008424	r3hdm2	100	76.103	Poecilia_reticulata
ENSIPUG00000023873	r3hdm2	96	59.228	ENSPPYG00000004685	R3HDM2	79	66.586	Pongo_abelii
ENSIPUG00000023873	r3hdm2	83	80.586	ENSPCAG00000014642	R3HDM2	86	82.197	Procavia_capensis
ENSIPUG00000023873	r3hdm2	99	61.330	ENSPCOG00000013201	R3HDM2	99	59.963	Propithecus_coquereli
ENSIPUG00000023873	r3hdm2	99	62.130	ENSPVAG00000003967	R3HDM2	99	62.037	Pteropus_vampyrus
ENSIPUG00000023873	r3hdm2	94	73.088	ENSPNYG00000013479	r3hdm2	100	72.682	Pundamilia_nyererei
ENSIPUG00000023873	r3hdm2	100	89.753	ENSPNAG00000017473	r3hdm2	100	90.038	Pygocentrus_nattereri
ENSIPUG00000023873	r3hdm2	99	61.895	ENSRNOG00000007801	R3hdm2	99	60.589	Rattus_norvegicus
ENSIPUG00000023873	r3hdm2	99	60.225	ENSRBIG00000037403	R3HDM2	98	73.723	Rhinopithecus_bieti
ENSIPUG00000023873	r3hdm2	99	64.071	ENSRROG00000022271	R3HDM2	98	73.723	Rhinopithecus_roxellana
ENSIPUG00000023873	r3hdm2	99	61.789	ENSSBOG00000023547	R3HDM2	98	73.966	Saimiri_boliviensis_boliviensis
ENSIPUG00000023873	r3hdm2	99	59.691	ENSSHAG00000003511	R3HDM2	99	61.638	Sarcophilus_harrisii
ENSIPUG00000023873	r3hdm2	94	73.404	ENSSFOG00015011219	r3hdm2	100	72.700	Scleropages_formosus
ENSIPUG00000023873	r3hdm2	100	75.392	ENSSMAG00000012073	r3hdm2	100	75.300	Scophthalmus_maximus
ENSIPUG00000023873	r3hdm2	100	76.937	ENSSDUG00000019269	r3hdm2	100	76.802	Seriola_dumerili
ENSIPUG00000023873	r3hdm2	100	76.753	ENSSLDG00000005252	r3hdm2	100	76.617	Seriola_lalandi_dorsalis
ENSIPUG00000023873	r3hdm2	85	60.494	ENSSARG00000003958	R3HDM2	94	57.672	Sorex_araneus
ENSIPUG00000023873	r3hdm2	99	58.646	ENSSPUG00000014132	R3HDM2	94	58.539	Sphenodon_punctatus
ENSIPUG00000023873	r3hdm2	100	76.817	ENSSPAG00000022594	r3hdm2	100	76.633	Stegastes_partitus
ENSIPUG00000023873	r3hdm2	96	63.372	ENSSSCG00000026498	R3HDM2	100	61.739	Sus_scrofa
ENSIPUG00000023873	r3hdm2	77	59.900	ENSTGUG00000015881	R3HDM2	99	59.194	Taeniopygia_guttata
ENSIPUG00000023873	r3hdm2	95	71.667	ENSTRUG00000015075	r3hdm2	99	71.081	Takifugu_rubripes
ENSIPUG00000023873	r3hdm2	86	84.916	ENSTNIG00000007057	r3hdm2	89	87.430	Tetraodon_nigroviridis
ENSIPUG00000023873	r3hdm2	81	63.542	ENSTBEG00000015967	R3HDM2	72	62.115	Tupaia_belangeri
ENSIPUG00000023873	r3hdm2	91	62.088	ENSTTRG00000013082	R3HDM2	88	63.867	Tursiops_truncatus
ENSIPUG00000023873	r3hdm2	87	79.019	ENSUAMG00000020913	R3HDM2	99	63.449	Ursus_americanus
ENSIPUG00000023873	r3hdm2	83	76.852	ENSUMAG00000019179	R3HDM2	96	63.017	Ursus_maritimus
ENSIPUG00000023873	r3hdm2	84	77.961	ENSVPAG00000008656	R3HDM2	86	73.270	Vicugna_pacos
ENSIPUG00000023873	r3hdm2	83	79.019	ENSVVUG00000018014	R3HDM2	95	62.764	Vulpes_vulpes
ENSIPUG00000023873	r3hdm2	99	60.757	ENSXETG00000017153	r3hdm2	99	58.924	Xenopus_tropicalis
ENSIPUG00000023873	r3hdm2	87	72.641	ENSXCOG00000013882	r3hdm2	100	72.428	Xiphophorus_couchianus
ENSIPUG00000023873	r3hdm2	50	38.951	ENSXMAG00000002994	-	52	44.540	Xiphophorus_maculatus
ENSIPUG00000023873	r3hdm2	100	76.471	ENSXMAG00000017978	r3hdm2	100	74.864	Xiphophorus_maculatus