EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000023960 (Gene tree)
Gene ID: 100528516
Gene Symbol: polr2j
Alias: rpb11
Full Name: RNA polymerase II subunit J
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 3344 bases
Position: chr28:4411619-4414962
Accession: 100528516
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000035744	RNA_pol_L_2	PF13656.6	3.5e-29	1	1
ENSIPUP00000035744	RNA_pol_L	PF01193.24	1.2e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000037152	-	1214	-	ENSIPUP00000035744	117 (aa)	-	E3TFE0

Gene Model

Click here to download ENSIPUG00000023960's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000023960's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000023960	polr2j	73	36.047	ENSIPUG00000014810	polr1d	75	36.047

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000023960	polr2j	91	94.393	ENSG00000228049	POLR2J2	94	91.743	Homo_sapiens
ENSIPUG00000023960	polr2j	100	96.581	ENSG00000005075	POLR2J	100	96.581	Homo_sapiens
ENSIPUG00000023960	polr2j	100	97.436	ENSAPOG00000019538	polr2j	100	97.436	Acanthochromis_polyacanthus
ENSIPUG00000023960	polr2j	100	88.976	ENSAMEG00000015480	-	100	88.976	Ailuropoda_melanoleuca
ENSIPUG00000023960	polr2j	93	74.545	ENSACIG00000014549	POLR2J2	91	74.545	Amphilophus_citrinellus
ENSIPUG00000023960	polr2j	100	96.581	ENSAOCG00000006937	polr2j	100	96.581	Amphiprion_ocellaris
ENSIPUG00000023960	polr2j	100	97.436	ENSAPEG00000021761	polr2j	100	97.436	Amphiprion_percula
ENSIPUG00000023960	polr2j	100	97.436	ENSATEG00000013312	-	100	97.436	Anabas_testudineus
ENSIPUG00000023960	polr2j	100	97.436	ENSATEG00000009731	polr2j	100	97.436	Anabas_testudineus
ENSIPUG00000023960	polr2j	86	94.059	ENSAPLG00000003744	-	100	94.059	Anas_platyrhynchos
ENSIPUG00000023960	polr2j	100	87.179	ENSACAG00000000251	POLR2J	100	87.179	Anolis_carolinensis
ENSIPUG00000023960	polr2j	100	97.436	ENSACLG00000014564	polr2j	100	97.436	Astatotilapia_calliptera
ENSIPUG00000023960	polr2j	100	100.000	ENSAMXG00000007517	polr2j	100	100.000	Astyanax_mexicanus
ENSIPUG00000023960	polr2j	62	65.753	ENSBTAG00000048046	-	61	65.753	Bos_taurus
ENSIPUG00000023960	polr2j	94	68.182	WBGene00012187	rpb-11	89	68.182	Caenorhabditis_elegans
ENSIPUG00000023960	polr2j	100	96.581	ENSCJAG00000016203	-	100	96.581	Callithrix_jacchus
ENSIPUG00000023960	polr2j	100	96.581	ENSCAFG00000013683	-	100	96.581	Canis_familiaris
ENSIPUG00000023960	polr2j	85	95.960	ENSTSYG00000029243	-	85	95.960	Carlito_syrichta
ENSIPUG00000023960	polr2j	100	96.581	ENSCPOG00000001401	-	100	96.581	Cavia_porcellus
ENSIPUG00000023960	polr2j	100	73.504	ENSCATG00000016595	-	96	84.615	Cercocebus_atys
ENSIPUG00000023960	polr2j	100	96.581	ENSCLAG00000005238	-	100	96.581	Chinchilla_lanigera
ENSIPUG00000023960	polr2j	100	96.581	ENSCSAG00000018092	-	100	96.581	Chlorocebus_sabaeus
ENSIPUG00000023960	polr2j	100	82.051	ENSCING00000020531	-	100	82.051	Ciona_intestinalis
ENSIPUG00000023960	polr2j	100	82.051	ENSCSAVG00000006948	-	100	82.051	Ciona_savignyi
ENSIPUG00000023960	polr2j	100	96.581	ENSCGRG00001012814	Polr2j	100	96.581	Cricetulus_griseus_chok1gshd
ENSIPUG00000023960	polr2j	100	82.051	ENSCGRG00000008433	Polr2j	100	82.051	Cricetulus_griseus_crigri
ENSIPUG00000023960	polr2j	100	94.872	ENSCSEG00000020352	polr2j	100	94.872	Cynoglossus_semilaevis
ENSIPUG00000023960	polr2j	100	96.581	ENSCVAG00000014267	polr2j	100	96.581	Cyprinodon_variegatus
ENSIPUG00000023960	polr2j	100	99.145	ENSDARG00000035146	polr2j	100	99.145	Danio_rerio
ENSIPUG00000023960	polr2j	100	96.581	ENSDORG00000005934	Polr2j	100	96.581	Dipodomys_ordii
ENSIPUG00000023960	polr2j	98	79.130	FBgn0032634	Rpb11	98	79.130	Drosophila_melanogaster
ENSIPUG00000023960	polr2j	100	64.957	ENSEBUG00000016100	polr2j	100	64.957	Eptatretus_burgeri
ENSIPUG00000023960	polr2j	100	96.581	ENSEASG00005016864	-	100	96.581	Equus_asinus_asinus
ENSIPUG00000023960	polr2j	100	98.291	ENSELUG00000012822	polr2j	100	98.291	Esox_lucius
ENSIPUG00000023960	polr2j	100	96.581	ENSFCAG00000000377	-	100	96.581	Felis_catus
ENSIPUG00000023960	polr2j	100	96.581	ENSFALG00000009523	POLR2J	100	96.581	Ficedula_albicollis
ENSIPUG00000023960	polr2j	100	96.581	ENSFDAG00000010507	-	100	96.581	Fukomys_damarensis
ENSIPUG00000023960	polr2j	100	97.436	ENSFHEG00000006625	polr2j	100	97.436	Fundulus_heteroclitus
ENSIPUG00000023960	polr2j	100	98.291	ENSGMOG00000018207	polr2j	100	98.291	Gadus_morhua
ENSIPUG00000023960	polr2j	100	96.581	ENSGALG00000030808	-	100	96.581	Gallus_gallus
ENSIPUG00000023960	polr2j	100	97.436	ENSGAFG00000019555	polr2j	100	97.436	Gambusia_affinis
ENSIPUG00000023960	polr2j	100	97.436	ENSGACG00000003310	polr2j	100	97.436	Gasterosteus_aculeatus
ENSIPUG00000023960	polr2j	97	86.726	ENSGAGG00000018304	-	96	86.726	Gopherus_agassizii
ENSIPUG00000023960	polr2j	85	91.000	ENSGGOG00000004519	-	80	91.000	Gorilla_gorilla
ENSIPUG00000023960	polr2j	100	97.436	ENSHBUG00000008467	polr2j	100	97.436	Haplochromis_burtoni
ENSIPUG00000023960	polr2j	100	96.581	ENSHGLG00000013598	POLR2J	100	96.581	Heterocephalus_glaber_female
ENSIPUG00000023960	polr2j	100	96.581	ENSHGLG00100011242	POLR2J	100	96.581	Heterocephalus_glaber_male
ENSIPUG00000023960	polr2j	100	98.291	ENSHCOG00000014827	polr2j	68	98.291	Hippocampus_comes
ENSIPUG00000023960	polr2j	100	96.581	ENSSTOG00000006377	POLR2J	100	96.581	Ictidomys_tridecemlineatus
ENSIPUG00000023960	polr2j	100	91.453	ENSJJAG00000018834	-	100	91.453	Jaculus_jaculus
ENSIPUG00000023960	polr2j	100	96.581	ENSJJAG00000013854	-	100	96.581	Jaculus_jaculus
ENSIPUG00000023960	polr2j	100	97.436	ENSKMAG00000014581	polr2j	79	97.436	Kryptolebias_marmoratus
ENSIPUG00000023960	polr2j	100	98.291	ENSLBEG00000005885	polr2j	100	98.291	Labrus_bergylta
ENSIPUG00000023960	polr2j	100	100.000	ENSLOCG00000001885	polr2j	89	100.000	Lepisosteus_oculatus
ENSIPUG00000023960	polr2j	100	96.581	ENSLAFG00000021507	-	100	96.581	Loxodonta_africana
ENSIPUG00000023960	polr2j	100	86.923	ENSMMUG00000012019	POLR2J	100	86.923	Macaca_mulatta
ENSIPUG00000023960	polr2j	100	98.291	ENSMAMG00000009374	polr2j	100	98.291	Mastacembelus_armatus
ENSIPUG00000023960	polr2j	100	97.436	ENSMZEG00005011932	polr2j	100	97.436	Maylandia_zebra
ENSIPUG00000023960	polr2j	100	96.581	ENSMGAG00000003534	POLR2J	100	96.581	Meleagris_gallopavo
ENSIPUG00000023960	polr2j	100	96.581	ENSMAUG00000013049	Polr2j	100	96.581	Mesocricetus_auratus
ENSIPUG00000023960	polr2j	80	91.489	ENSMICG00000026811	-	94	91.489	Microcebus_murinus
ENSIPUG00000023960	polr2j	100	96.581	ENSMOCG00000001294	Polr2j	100	96.581	Microtus_ochrogaster
ENSIPUG00000023960	polr2j	100	97.436	ENSMMOG00000013265	polr2j	100	97.436	Mola_mola
ENSIPUG00000023960	polr2j	100	88.281	ENSMODG00000013617	-	100	88.281	Monodelphis_domestica
ENSIPUG00000023960	polr2j	100	98.291	ENSMALG00000020749	polr2j	100	98.291	Monopterus_albus
ENSIPUG00000023960	polr2j	100	96.581	MGP_CAROLIEiJ_G0027851	Polr2j	100	96.581	Mus_caroli
ENSIPUG00000023960	polr2j	100	96.581	ENSMUSG00000039771	Polr2j	100	96.581	Mus_musculus
ENSIPUG00000023960	polr2j	100	96.581	MGP_PahariEiJ_G0024434	Polr2j	100	96.581	Mus_pahari
ENSIPUG00000023960	polr2j	100	96.581	MGP_SPRETEiJ_G0028853	Polr2j	100	96.581	Mus_spretus
ENSIPUG00000023960	polr2j	100	96.581	ENSMLUG00000010467	POLR2J	100	96.581	Myotis_lucifugus
ENSIPUG00000023960	polr2j	100	96.581	ENSNGAG00000023412	Polr2j	100	96.581	Nannospalax_galili
ENSIPUG00000023960	polr2j	66	94.805	ENSNBRG00000006580	polr2j	59	94.805	Neolamprologus_brichardi
ENSIPUG00000023960	polr2j	100	75.214	ENSODEG00000008559	-	100	75.214	Octodon_degus
ENSIPUG00000023960	polr2j	100	96.581	ENSODEG00000015648	-	100	96.581	Octodon_degus
ENSIPUG00000023960	polr2j	100	97.436	ENSONIG00000000259	polr2j	100	97.436	Oreochromis_niloticus
ENSIPUG00000023960	polr2j	100	94.017	ENSOANG00000020912	POLR2J	100	94.017	Ornithorhynchus_anatinus
ENSIPUG00000023960	polr2j	100	88.976	ENSOCUG00000023609	POLR2J	100	88.976	Oryctolagus_cuniculus
ENSIPUG00000023960	polr2j	100	97.436	ENSORLG00000029046	polr2j	83	97.436	Oryzias_latipes
ENSIPUG00000023960	polr2j	100	97.436	ENSORLG00020007625	polr2j	83	97.436	Oryzias_latipes_hni
ENSIPUG00000023960	polr2j	100	97.436	ENSORLG00015003457	polr2j	83	97.436	Oryzias_latipes_hsok
ENSIPUG00000023960	polr2j	100	96.581	ENSOMEG00000002097	polr2j	100	96.581	Oryzias_melastigma
ENSIPUG00000023960	polr2j	100	71.875	ENSOGAG00000008250	-	100	71.875	Otolemur_garnettii
ENSIPUG00000023960	polr2j	100	96.581	ENSOARG00000014204	-	98	96.581	Ovis_aries
ENSIPUG00000023960	polr2j	100	96.581	ENSPPRG00000012439	-	100	96.581	Panthera_pardus
ENSIPUG00000023960	polr2j	97	87.719	ENSPTIG00000018714	-	100	93.204	Panthera_tigris_altaica
ENSIPUG00000023960	polr2j	85	95.000	ENSPSIG00000010173	-	100	95.000	Pelodiscus_sinensis
ENSIPUG00000023960	polr2j	100	97.436	ENSPMGG00000021256	polr2j	100	97.436	Periophthalmus_magnuspinnatus
ENSIPUG00000023960	polr2j	100	96.581	ENSPEMG00000015733	Polr2j	100	96.581	Peromyscus_maniculatus_bairdii
ENSIPUG00000023960	polr2j	100	96.581	ENSPCIG00000009026	-	100	96.581	Phascolarctos_cinereus
ENSIPUG00000023960	polr2j	100	97.436	ENSPFOG00000012001	polr2j	99	97.436	Poecilia_formosa
ENSIPUG00000023960	polr2j	100	97.436	ENSPLAG00000014075	polr2j	100	97.436	Poecilia_latipinna
ENSIPUG00000023960	polr2j	100	97.436	ENSPMEG00000020585	polr2j	100	97.436	Poecilia_mexicana
ENSIPUG00000023960	polr2j	100	97.436	ENSPREG00000015255	polr2j	100	97.436	Poecilia_reticulata
ENSIPUG00000023960	polr2j	100	96.581	ENSPCOG00000024573	-	100	96.581	Propithecus_coquereli
ENSIPUG00000023960	polr2j	99	90.517	ENSPVAG00000017770	-	66	90.517	Pteropus_vampyrus
ENSIPUG00000023960	polr2j	100	97.436	ENSPNYG00000014832	polr2j	100	97.436	Pundamilia_nyererei
ENSIPUG00000023960	polr2j	100	97.436	ENSPNAG00000016595	polr2j	100	97.436	Pygocentrus_nattereri
ENSIPUG00000023960	polr2j	100	96.581	ENSRNOG00000001430	Polr2j	100	96.581	Rattus_norvegicus
ENSIPUG00000023960	polr2j	100	96.581	ENSSBOG00000025579	-	100	96.581	Saimiri_boliviensis_boliviensis
ENSIPUG00000023960	polr2j	59	98.551	ENSSHAG00000010443	-	81	98.551	Sarcophilus_harrisii
ENSIPUG00000023960	polr2j	93	97.248	ENSSFOG00015003371	polr2j	83	97.248	Scleropages_formosus
ENSIPUG00000023960	polr2j	100	97.436	ENSSMAG00000006729	polr2j	100	97.436	Scophthalmus_maximus
ENSIPUG00000023960	polr2j	100	97.436	ENSSDUG00000018490	polr2j	100	97.436	Seriola_dumerili
ENSIPUG00000023960	polr2j	100	97.436	ENSSLDG00000022354	polr2j	100	97.436	Seriola_lalandi_dorsalis
ENSIPUG00000023960	polr2j	100	96.581	ENSSPUG00000010802	-	100	96.581	Sphenodon_punctatus
ENSIPUG00000023960	polr2j	100	97.436	ENSSPAG00000021953	polr2j	100	97.436	Stegastes_partitus
ENSIPUG00000023960	polr2j	100	96.581	ENSSSCG00000007688	-	100	96.581	Sus_scrofa
ENSIPUG00000023960	polr2j	100	80.342	ENSSSCG00000003703	-	83	80.342	Sus_scrofa
ENSIPUG00000023960	polr2j	59	98.551	ENSTGUG00000004510	-	100	98.551	Taeniopygia_guttata
ENSIPUG00000023960	polr2j	85	95.000	ENSTGUG00000004501	-	100	95.000	Taeniopygia_guttata
ENSIPUG00000023960	polr2j	100	97.436	ENSTRUG00000020842	polr2j	100	97.436	Takifugu_rubripes
ENSIPUG00000023960	polr2j	100	96.581	ENSTNIG00000002994	polr2j	100	96.581	Tetraodon_nigroviridis
ENSIPUG00000023960	polr2j	91	80.374	ENSTBEG00000005797	-	70	80.374	Tupaia_belangeri
ENSIPUG00000023960	polr2j	100	96.581	ENSUAMG00000011310	-	100	96.581	Ursus_americanus
ENSIPUG00000023960	polr2j	100	96.581	ENSUMAG00000012594	-	100	96.581	Ursus_maritimus
ENSIPUG00000023960	polr2j	100	96.581	ENSXETG00000001108	polr2j	100	96.581	Xenopus_tropicalis
ENSIPUG00000023960	polr2j	100	97.436	ENSXMAG00000012422	polr2j	100	97.436	Xiphophorus_maculatus