EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000024162 (Gene tree)
Gene ID: 108279636
Gene Symbol: prdm4
Alias: si:dkey-180p18.8
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 11194 bases
Position: chr19:21779041-21790234
Accession: 108279636
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000036052	zf-C2H2	PF00096.26	1.5e-23	1	4
ENSIPUP00000036052	zf-C2H2	PF00096.26	1.5e-23	2	4
ENSIPUP00000036052	zf-C2H2	PF00096.26	1.5e-23	3	4
ENSIPUP00000036052	zf-C2H2	PF00096.26	1.5e-23	4	4
ENSIPUP00000036045	zf-C2H2	PF00096.26	2e-23	1	4
ENSIPUP00000036045	zf-C2H2	PF00096.26	2e-23	2	4
ENSIPUP00000036045	zf-C2H2	PF00096.26	2e-23	3	4
ENSIPUP00000036045	zf-C2H2	PF00096.26	2e-23	4	4
ENSIPUP00000036048	zf-C2H2	PF00096.26	2.5e-23	1	4
ENSIPUP00000036048	zf-C2H2	PF00096.26	2.5e-23	2	4
ENSIPUP00000036048	zf-C2H2	PF00096.26	2.5e-23	3	4
ENSIPUP00000036048	zf-C2H2	PF00096.26	2.5e-23	4	4
ENSIPUP00000036045	zf-met	PF12874.7	0.0002	1	2
ENSIPUP00000036045	zf-met	PF12874.7	0.0002	2	2
ENSIPUP00000036052	zf-met	PF12874.7	0.00021	1	2
ENSIPUP00000036052	zf-met	PF12874.7	0.00021	2	2
ENSIPUP00000036048	zf-met	PF12874.7	0.00025	1	2
ENSIPUP00000036048	zf-met	PF12874.7	0.00025	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000037467	-	2331	-	ENSIPUP00000036052	776 (aa)	-	-
ENSIPUT00000037463	-	4072	XM_017493957	ENSIPUP00000036048	836 (aa)	XP_017349446	A0A2D0T3P9
ENSIPUT00000037460	-	4063	XM_017493958	ENSIPUP00000036045	815 (aa)	XP_017349447	A0A2D0T3F6

Gene Model

Click here to download ENSIPUG00000024162's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000024162's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000024162	prdm4	51	36.788	ENSIPUG00000003011	-	86	41.714
ENSIPUG00000024162	prdm4	51	32.243	ENSIPUG00000023513	-	79	39.560
ENSIPUG00000024162	prdm4	51	35.766	ENSIPUG00000017575	-	90	36.517
ENSIPUG00000024162	prdm4	51	43.158	ENSIPUG00000014798	-	84	43.158

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000024162	prdm4	93	61.749	ENSG00000110851	PRDM4	95	68.493	Homo_sapiens
ENSIPUG00000024162	prdm4	94	60.931	ENSAMEG00000016174	PRDM4	95	60.931	Ailuropoda_melanoleuca
ENSIPUG00000024162	prdm4	94	62.435	ENSAPLG00000009846	PRDM4	95	62.435	Anas_platyrhynchos
ENSIPUG00000024162	prdm4	93	61.438	ENSANAG00000024800	PRDM4	95	61.089	Aotus_nancymaae
ENSIPUG00000024162	prdm4	93	61.358	ENSBTAG00000012999	PRDM4	99	59.341	Bos_taurus
ENSIPUG00000024162	prdm4	93	73.684	ENSCJAG00000015261	PRDM4	94	70.833	Callithrix_jacchus
ENSIPUG00000024162	prdm4	93	61.097	ENSCAFG00000001788	PRDM4	95	60.751	Canis_familiaris
ENSIPUG00000024162	prdm4	93	61.097	ENSCAFG00020004916	PRDM4	95	60.751	Canis_lupus_dingo
ENSIPUG00000024162	prdm4	93	61.619	ENSCHIG00000019409	PRDM4	95	61.528	Capra_hircus
ENSIPUG00000024162	prdm4	93	61.488	ENSTSYG00000009248	PRDM4	95	61.140	Carlito_syrichta
ENSIPUG00000024162	prdm4	94	60.594	ENSCAPG00000013937	PRDM4	95	60.594	Cavia_aperea
ENSIPUG00000024162	prdm4	94	60.540	ENSCPOG00000022385	PRDM4	95	60.540	Cavia_porcellus
ENSIPUG00000024162	prdm4	93	61.619	ENSCCAG00000036033	PRDM4	95	61.269	Cebus_capucinus
ENSIPUG00000024162	prdm4	93	61.880	ENSCATG00000044797	PRDM4	95	61.528	Cercocebus_atys
ENSIPUG00000024162	prdm4	94	60.719	ENSCLAG00000007545	PRDM4	95	60.847	Chinchilla_lanigera
ENSIPUG00000024162	prdm4	93	61.749	ENSCSAG00000002896	PRDM4	95	61.399	Chlorocebus_sabaeus
ENSIPUG00000024162	prdm4	57	76.147	ENSCHOG00000001744	PRDM4	66	76.147	Choloepus_hoffmanni
ENSIPUG00000024162	prdm4	94	61.578	ENSCPBG00000023187	PRDM4	95	61.837	Chrysemys_picta_bellii
ENSIPUG00000024162	prdm4	93	61.880	ENSCANG00000021804	PRDM4	95	61.528	Colobus_angolensis_palliatus
ENSIPUG00000024162	prdm4	94	60.591	ENSCGRG00001015102	-	95	60.591	Cricetulus_griseus_chok1gshd
ENSIPUG00000024162	prdm4	91	60.400	ENSCGRG00000004044	-	95	60.400	Cricetulus_griseus_crigri
ENSIPUG00000024162	prdm4	93	61.569	ENSDNOG00000032478	PRDM4	99	60.255	Dasypus_novemcinctus
ENSIPUG00000024162	prdm4	93	51.172	ENSDORG00000015081	-	99	49.330	Dipodomys_ordii
ENSIPUG00000024162	prdm4	94	42.649	ENSEBUG00000003775	prdm4	99	45.125	Eptatretus_burgeri
ENSIPUG00000024162	prdm4	93	61.358	ENSECAG00000015423	PRDM4	99	58.974	Equus_caballus
ENSIPUG00000024162	prdm4	89	59.310	ENSEEUG00000006569	PRDM4	99	57.383	Erinaceus_europaeus
ENSIPUG00000024162	prdm4	100	73.045	ENSELUG00000015265	prdm4	99	73.842	Esox_lucius
ENSIPUG00000024162	prdm4	93	61.358	ENSFCAG00000022478	PRDM4	95	61.010	Felis_catus
ENSIPUG00000024162	prdm4	100	58.216	ENSFALG00000013342	PRDM4	95	62.387	Ficedula_albicollis
ENSIPUG00000024162	prdm4	94	61.140	ENSGALG00000012619	PRDM4	95	61.140	Gallus_gallus
ENSIPUG00000024162	prdm4	94	61.320	ENSGAGG00000002763	PRDM4	90	61.578	Gopherus_agassizii
ENSIPUG00000024162	prdm4	93	61.880	ENSGGOG00000001244	PRDM4	95	61.528	Gorilla_gorilla
ENSIPUG00000024162	prdm4	100	58.415	ENSHGLG00000004590	PRDM4	98	58.415	Heterocephalus_glaber_female
ENSIPUG00000024162	prdm4	99	57.920	ENSHGLG00100007464	PRDM4	99	57.920	Heterocephalus_glaber_male
ENSIPUG00000024162	prdm4	93	61.699	ENSSTOG00000016168	PRDM4	99	59.413	Ictidomys_tridecemlineatus
ENSIPUG00000024162	prdm4	72	67.580	ENSJJAG00000022448	-	85	66.222	Jaculus_jaculus
ENSIPUG00000024162	prdm4	93	61.518	ENSLACG00000007452	PRDM4	94	61.387	Latimeria_chalumnae
ENSIPUG00000024162	prdm4	78	65.882	ENSLOCG00000017092	prdm4	100	46.552	Lepisosteus_oculatus
ENSIPUG00000024162	prdm4	93	60.673	ENSLAFG00000001483	PRDM4	97	60.591	Loxodonta_africana
ENSIPUG00000024162	prdm4	93	61.749	ENSMFAG00000041862	PRDM4	95	61.399	Macaca_fascicularis
ENSIPUG00000024162	prdm4	93	61.749	ENSMMUG00000015550	PRDM4	95	61.399	Macaca_mulatta
ENSIPUG00000024162	prdm4	93	61.749	ENSMNEG00000032319	PRDM4	95	61.399	Macaca_nemestrina
ENSIPUG00000024162	prdm4	93	61.619	ENSMLEG00000039607	PRDM4	95	61.269	Mandrillus_leucophaeus
ENSIPUG00000024162	prdm4	94	58.515	ENSMGAG00000012815	PRDM4	95	58.515	Meleagris_gallopavo
ENSIPUG00000024162	prdm4	93	61.097	ENSMICG00000007807	PRDM4	95	60.751	Microcebus_murinus
ENSIPUG00000024162	prdm4	93	61.227	ENSMOCG00000000753	Prdm4	95	60.881	Microtus_ochrogaster
ENSIPUG00000024162	prdm4	93	61.227	ENSMUSG00000035529	Prdm4	99	59.219	Mus_musculus
ENSIPUG00000024162	prdm4	93	61.358	MGP_PahariEiJ_G0031398	Prdm4	95	61.010	Mus_pahari
ENSIPUG00000024162	prdm4	93	61.358	MGP_SPRETEiJ_G0016505	Prdm4	95	61.269	Mus_spretus
ENSIPUG00000024162	prdm4	93	56.063	ENSMPUG00000012238	PRDM4	95	55.757	Mustela_putorius_furo
ENSIPUG00000024162	prdm4	93	61.358	ENSMLUG00000000767	PRDM4	95	61.010	Myotis_lucifugus
ENSIPUG00000024162	prdm4	93	61.619	ENSNGAG00000018627	Prdm4	95	61.269	Nannospalax_galili
ENSIPUG00000024162	prdm4	93	61.619	ENSNLEG00000006748	PRDM4	95	61.269	Nomascus_leucogenys
ENSIPUG00000024162	prdm4	83	65.969	ENSMEUG00000004495	PRDM4	84	65.969	Notamacropus_eugenii
ENSIPUG00000024162	prdm4	81	67.586	ENSOPRG00000010192	PRDM4	88	61.224	Ochotona_princeps
ENSIPUG00000024162	prdm4	94	60.104	ENSODEG00000014750	PRDM4	95	60.492	Octodon_degus
ENSIPUG00000024162	prdm4	94	61.578	ENSOANG00000005526	PRDM4	96	61.578	Ornithorhynchus_anatinus
ENSIPUG00000024162	prdm4	93	58.953	ENSOCUG00000012859	PRDM4	97	59.229	Oryctolagus_cuniculus
ENSIPUG00000024162	prdm4	93	61.387	ENSOGAG00000011945	PRDM4	95	61.039	Otolemur_garnettii
ENSIPUG00000024162	prdm4	93	61.488	ENSOARG00000017955	PRDM4	95	61.399	Ovis_aries
ENSIPUG00000024162	prdm4	93	61.749	ENSPPAG00000038438	PRDM4	95	61.399	Pan_paniscus
ENSIPUG00000024162	prdm4	93	61.358	ENSPPRG00000004144	PRDM4	95	61.010	Panthera_pardus
ENSIPUG00000024162	prdm4	93	61.358	ENSPTIG00000005847	PRDM4	95	61.010	Panthera_tigris_altaica
ENSIPUG00000024162	prdm4	93	61.749	ENSPTRG00000005400	PRDM4	95	61.399	Pan_troglodytes
ENSIPUG00000024162	prdm4	93	61.749	ENSPANG00000022084	PRDM4	95	61.399	Papio_anubis
ENSIPUG00000024162	prdm4	100	67.661	ENSPKIG00000000875	prdm4	99	68.864	Paramormyrops_kingsleyae
ENSIPUG00000024162	prdm4	75	71.264	ENSPSIG00000012066	PRDM4	92	71.264	Pelodiscus_sinensis
ENSIPUG00000024162	prdm4	94	61.061	ENSPEMG00000014598	Prdm4	95	61.010	Peromyscus_maniculatus_bairdii
ENSIPUG00000024162	prdm4	99	58.765	ENSPCIG00000009471	PRDM4	94	60.728	Phascolarctos_cinereus
ENSIPUG00000024162	prdm4	93	61.488	ENSPPYG00000004913	PRDM4	95	61.140	Pongo_abelii
ENSIPUG00000024162	prdm4	71	58.491	ENSPCAG00000009987	PRDM4	72	57.922	Procavia_capensis
ENSIPUG00000024162	prdm4	93	60.966	ENSPCOG00000021060	PRDM4	95	60.622	Propithecus_coquereli
ENSIPUG00000024162	prdm4	93	61.227	ENSPVAG00000001596	PRDM4	94	61.140	Pteropus_vampyrus
ENSIPUG00000024162	prdm4	94	60.751	ENSRNOG00000004962	Prdm4	95	61.010	Rattus_norvegicus
ENSIPUG00000024162	prdm4	93	62.010	ENSRBIG00000035488	PRDM4	95	61.658	Rhinopithecus_bieti
ENSIPUG00000024162	prdm4	93	61.880	ENSRROG00000012779	PRDM4	95	61.528	Rhinopithecus_roxellana
ENSIPUG00000024162	prdm4	93	73.684	ENSSBOG00000000403	PRDM4	94	70.833	Saimiri_boliviensis_boliviensis
ENSIPUG00000024162	prdm4	100	69.048	ENSSFOG00015023358	prdm4	99	69.390	Scleropages_formosus
ENSIPUG00000024162	prdm4	93	61.227	ENSSSCG00000000160	PRDM4	99	58.974	Sus_scrofa
ENSIPUG00000024162	prdm4	100	58.080	ENSTGUG00000010962	-	95	62.225	Taeniopygia_guttata
ENSIPUG00000024162	prdm4	80	51.759	ENSTBEG00000001732	PRDM4	84	51.759	Tupaia_belangeri
ENSIPUG00000024162	prdm4	93	61.097	ENSTTRG00000011056	PRDM4	95	61.010	Tursiops_truncatus
ENSIPUG00000024162	prdm4	93	61.358	ENSUAMG00000022796	PRDM4	95	61.010	Ursus_americanus
ENSIPUG00000024162	prdm4	93	61.358	ENSUMAG00000017231	PRDM4	95	61.010	Ursus_maritimus
ENSIPUG00000024162	prdm4	93	60.966	ENSVPAG00000002215	PRDM4	95	60.881	Vicugna_pacos
ENSIPUG00000024162	prdm4	93	61.097	ENSVVUG00000023397	PRDM4	95	60.751	Vulpes_vulpes