EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000024348 (Gene tree)
Gene ID: 108277035
Gene Symbol: skiv2l2
Alias: julie|mtrex|skiv2l2|wu:fd11a05|zgc:63838
Full Name: Mtr4 exosome RNA helicase
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 43691 bases
Position: chr16:3986743-4030433
Accession: 108277035
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000036334	rRNA_proc-arch	PF13234.6	6.2e-85	1	1
ENSIPUP00000036331	rRNA_proc-arch	PF13234.6	6.2e-85	1	1
ENSIPUP00000036337	rRNA_proc-arch	PF13234.6	6.6e-85	1	1
ENSIPUP00000036337	DEAD	PF00270.29	3.5e-17	1	1
ENSIPUP00000036334	DEAD	PF00270.29	3.5e-17	1	1
ENSIPUP00000036331	DEAD	PF00270.29	3.6e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000037761	-	3081	-	ENSIPUP00000036337	1026 (aa)	-	-
ENSIPUT00000037755	-	3386	-	ENSIPUP00000036331	1042 (aa)	-	-
ENSIPUT00000037758	-	3831	XM_017489308	ENSIPUP00000036334	1036 (aa)	XP_017344797	A0A2D0SQ22

Gene Model

Click here to download ENSIPUG00000024348's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000024348's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000024348	skiv2l2	89	35.751	ENSIPUG00000016263	skiv2l	77	35.853

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000024348	skiv2l2	100	85.086	ENSG00000039123	MTREX	100	85.196	Homo_sapiens
ENSIPUG00000024348	skiv2l2	100	86.526	ENSAPOG00000007814	mtrex	100	86.333	Acanthochromis_polyacanthus
ENSIPUG00000024348	skiv2l2	100	85.387	ENSAMEG00000013856	MTREX	100	85.100	Ailuropoda_melanoleuca
ENSIPUG00000024348	skiv2l2	100	83.977	ENSACIG00000015117	mtrex	96	88.819	Amphilophus_citrinellus
ENSIPUG00000024348	skiv2l2	100	86.910	ENSAOCG00000011884	mtrex	100	86.718	Amphiprion_ocellaris
ENSIPUG00000024348	skiv2l2	100	86.910	ENSAPEG00000019384	mtrex	100	86.718	Amphiprion_percula
ENSIPUG00000024348	skiv2l2	100	86.416	ENSATEG00000015117	mtrex	100	86.416	Anabas_testudineus
ENSIPUG00000024348	skiv2l2	96	85.944	ENSAPLG00000009694	MTREX	99	85.944	Anas_platyrhynchos
ENSIPUG00000024348	skiv2l2	100	85.714	ENSACAG00000015200	MTREX	96	85.427	Anolis_carolinensis
ENSIPUG00000024348	skiv2l2	100	85.182	ENSANAG00000023095	MTREX	98	87.663	Aotus_nancymaae
ENSIPUG00000024348	skiv2l2	100	85.948	ENSACLG00000001921	mtrex	100	85.645	Astatotilapia_calliptera
ENSIPUG00000024348	skiv2l2	95	89.858	ENSAMXG00000018751	mtrex	99	89.858	Astyanax_mexicanus
ENSIPUG00000024348	skiv2l2	100	85.345	ENSBTAG00000010518	MTREX	100	85.345	Bos_taurus
ENSIPUG00000024348	skiv2l2	91	54.410	WBGene00012342	mtr-4	91	54.304	Caenorhabditis_elegans
ENSIPUG00000024348	skiv2l2	100	84.411	ENSCJAG00000001773	MTREX	100	84.710	Callithrix_jacchus
ENSIPUG00000024348	skiv2l2	100	85.373	ENSCAFG00000006818	MTREX	100	85.387	Canis_familiaris
ENSIPUG00000024348	skiv2l2	100	85.373	ENSCAFG00020024352	MTREX	100	85.387	Canis_lupus_dingo
ENSIPUG00000024348	skiv2l2	100	85.019	ENSCHIG00000024413	MTREX	100	85.291	Capra_hircus
ENSIPUG00000024348	skiv2l2	94	87.050	ENSTSYG00000007389	MTREX	100	86.894	Carlito_syrichta
ENSIPUG00000024348	skiv2l2	96	65.130	ENSCAPG00000008696	MTREX	99	64.930	Cavia_aperea
ENSIPUG00000024348	skiv2l2	100	84.828	ENSCPOG00000009797	MTREX	100	85.100	Cavia_porcellus
ENSIPUG00000024348	skiv2l2	100	85.182	ENSCCAG00000014177	MTREX	100	85.196	Cebus_capucinus
ENSIPUG00000024348	skiv2l2	100	85.086	ENSCATG00000042153	MTREX	100	85.196	Cercocebus_atys
ENSIPUG00000024348	skiv2l2	100	84.733	ENSCLAG00000006622	MTREX	100	85.100	Chinchilla_lanigera
ENSIPUG00000024348	skiv2l2	100	81.274	ENSCSAG00000016445	MTREX	100	81.387	Chlorocebus_sabaeus
ENSIPUG00000024348	skiv2l2	62	97.222	ENSCHOG00000010936	-	62	97.222	Choloepus_hoffmanni
ENSIPUG00000024348	skiv2l2	100	86.359	ENSCPBG00000026551	MTREX	94	86.359	Chrysemys_picta_bellii
ENSIPUG00000024348	skiv2l2	99	66.763	ENSCING00000003239	-	99	66.763	Ciona_intestinalis
ENSIPUG00000024348	skiv2l2	99	65.451	ENSCSAVG00000009304	-	100	69.817	Ciona_savignyi
ENSIPUG00000024348	skiv2l2	100	85.196	ENSCANG00000035770	MTREX	100	85.100	Colobus_angolensis_palliatus
ENSIPUG00000024348	skiv2l2	100	85.455	ENSCGRG00001024680	Mtrex	100	85.550	Cricetulus_griseus_chok1gshd
ENSIPUG00000024348	skiv2l2	100	85.455	ENSCGRG00000000307	Mtrex	100	85.550	Cricetulus_griseus_crigri
ENSIPUG00000024348	skiv2l2	100	85.549	ENSCSEG00000018621	mtrex	98	85.549	Cynoglossus_semilaevis
ENSIPUG00000024348	skiv2l2	100	85.756	ENSCVAG00000004556	mtrex	100	85.659	Cyprinodon_variegatus
ENSIPUG00000024348	skiv2l2	100	89.392	ENSDARG00000013457	mtrex	100	89.392	Danio_rerio
ENSIPUG00000024348	skiv2l2	100	84.952	ENSDNOG00000015375	MTREX	100	84.952	Dasypus_novemcinctus
ENSIPUG00000024348	skiv2l2	100	84.895	ENSDORG00000006782	Mtrex	100	85.100	Dipodomys_ordii
ENSIPUG00000024348	skiv2l2	99	62.804	FBgn0001986	Mtr4	99	61.095	Drosophila_melanogaster
ENSIPUG00000024348	skiv2l2	74	98.039	ENSETEG00000000727	MTREX	73	98.039	Echinops_telfairi
ENSIPUG00000024348	skiv2l2	99	74.927	ENSEBUG00000012869	mtrex	99	74.927	Eptatretus_burgeri
ENSIPUG00000024348	skiv2l2	100	85.564	ENSEASG00005013270	MTREX	100	85.387	Equus_asinus_asinus
ENSIPUG00000024348	skiv2l2	100	85.660	ENSECAG00000023723	MTREX	100	91.628	Equus_caballus
ENSIPUG00000024348	skiv2l2	98	77.282	ENSEEUG00000000527	MTREX	99	77.551	Erinaceus_europaeus
ENSIPUG00000024348	skiv2l2	98	89.422	ENSELUG00000004898	mtrex	100	92.647	Esox_lucius
ENSIPUG00000024348	skiv2l2	100	85.482	ENSFCAG00000010575	MTREX	100	85.387	Felis_catus
ENSIPUG00000024348	skiv2l2	100	84.008	ENSFALG00000010850	MTREX	100	84.246	Ficedula_albicollis
ENSIPUG00000024348	skiv2l2	100	84.623	ENSFDAG00000011199	MTREX	100	84.483	Fukomys_damarensis
ENSIPUG00000024348	skiv2l2	100	85.563	ENSFHEG00000023014	mtrex	100	83.413	Fundulus_heteroclitus
ENSIPUG00000024348	skiv2l2	100	82.483	ENSGMOG00000014702	mtrex	100	82.483	Gadus_morhua
ENSIPUG00000024348	skiv2l2	100	85.549	ENSGALG00000014709	MTREX	86	85.014	Gallus_gallus
ENSIPUG00000024348	skiv2l2	100	85.934	ENSGAFG00000012425	mtrex	100	86.031	Gambusia_affinis
ENSIPUG00000024348	skiv2l2	100	82.081	ENSGACG00000016260	mtrex	96	87.065	Gasterosteus_aculeatus
ENSIPUG00000024348	skiv2l2	100	86.071	ENSGAGG00000020036	MTREX	100	86.071	Gopherus_agassizii
ENSIPUG00000024348	skiv2l2	100	85.182	ENSGGOG00000001867	MTREX	100	85.291	Gorilla_gorilla
ENSIPUG00000024348	skiv2l2	100	85.948	ENSHBUG00000006229	mtrex	100	85.645	Haplochromis_burtoni
ENSIPUG00000024348	skiv2l2	100	85.057	ENSHGLG00000019445	SKIV2L2	100	85.057	Heterocephalus_glaber_female
ENSIPUG00000024348	skiv2l2	100	85.057	ENSHGLG00100011833	SKIV2L2	100	85.057	Heterocephalus_glaber_male
ENSIPUG00000024348	skiv2l2	92	86.456	ENSHCOG00000019995	mtrex	100	86.456	Hippocampus_comes
ENSIPUG00000024348	skiv2l2	100	84.990	ENSSTOG00000010802	MTREX	100	85.100	Ictidomys_tridecemlineatus
ENSIPUG00000024348	skiv2l2	100	80.307	ENSJJAG00000020975	Mtrex	100	80.038	Jaculus_jaculus
ENSIPUG00000024348	skiv2l2	100	85.852	ENSKMAG00000012642	mtrex	100	85.756	Kryptolebias_marmoratus
ENSIPUG00000024348	skiv2l2	100	85.756	ENSLBEG00000019367	mtrex	99	87.487	Labrus_bergylta
ENSIPUG00000024348	skiv2l2	100	86.873	ENSLACG00000009075	MTREX	100	86.873	Latimeria_chalumnae
ENSIPUG00000024348	skiv2l2	100	89.595	ENSLOCG00000010186	mtrex	100	89.595	Lepisosteus_oculatus
ENSIPUG00000024348	skiv2l2	99	83.015	ENSLAFG00000010497	MTREX	100	83.381	Loxodonta_africana
ENSIPUG00000024348	skiv2l2	100	85.086	ENSMFAG00000031610	MTREX	100	85.196	Macaca_fascicularis
ENSIPUG00000024348	skiv2l2	100	84.186	ENSMMUG00000010379	MTREX	100	84.557	Macaca_mulatta
ENSIPUG00000024348	skiv2l2	100	85.086	ENSMNEG00000032746	MTREX	100	85.196	Macaca_nemestrina
ENSIPUG00000024348	skiv2l2	100	85.086	ENSMLEG00000041051	MTREX	100	85.196	Mandrillus_leucophaeus
ENSIPUG00000024348	skiv2l2	100	84.489	ENSMAMG00000016753	mtrex	98	87.575	Mastacembelus_armatus
ENSIPUG00000024348	skiv2l2	100	85.948	ENSMZEG00005000414	mtrex	100	85.645	Maylandia_zebra
ENSIPUG00000024348	skiv2l2	95	63.306	ENSMGAG00000003980	MTREX	99	63.306	Meleagris_gallopavo
ENSIPUG00000024348	skiv2l2	100	85.263	ENSMAUG00000010727	Mtrex	100	85.263	Mesocricetus_auratus
ENSIPUG00000024348	skiv2l2	100	85.468	ENSMICG00000012779	MTREX	100	85.673	Microcebus_murinus
ENSIPUG00000024348	skiv2l2	100	85.468	ENSMOCG00000019886	Mtrex	100	85.468	Microtus_ochrogaster
ENSIPUG00000024348	skiv2l2	100	83.558	ENSMMOG00000002476	mtrex	100	83.526	Mola_mola
ENSIPUG00000024348	skiv2l2	100	85.246	ENSMODG00000019494	MTREX	100	85.246	Monodelphis_domestica
ENSIPUG00000024348	skiv2l2	92	83.984	ENSMALG00000002917	mtrex	98	83.984	Monopterus_albus
ENSIPUG00000024348	skiv2l2	100	84.483	MGP_CAROLIEiJ_G0018896	Mtrex	100	84.483	Mus_caroli
ENSIPUG00000024348	skiv2l2	100	84.512	ENSMUSG00000016018	Mtrex	100	84.674	Mus_musculus
ENSIPUG00000024348	skiv2l2	100	84.512	MGP_PahariEiJ_G0015967	Mtrex	100	84.674	Mus_pahari
ENSIPUG00000024348	skiv2l2	100	84.512	MGP_SPRETEiJ_G0019775	Mtrex	100	84.674	Mus_spretus
ENSIPUG00000024348	skiv2l2	100	85.373	ENSMPUG00000007619	MTREX	100	85.482	Mustela_putorius_furo
ENSIPUG00000024348	skiv2l2	100	84.623	ENSMLUG00000001152	MTREX	100	84.623	Myotis_lucifugus
ENSIPUG00000024348	skiv2l2	100	85.182	ENSNGAG00000011938	Mtrex	100	85.291	Nannospalax_galili
ENSIPUG00000024348	skiv2l2	100	86.044	ENSNBRG00000011293	mtrex	100	85.742	Neolamprologus_brichardi
ENSIPUG00000024348	skiv2l2	100	81.048	ENSNLEG00000001494	MTREX	100	81.220	Nomascus_leucogenys
ENSIPUG00000024348	skiv2l2	83	98.039	ENSMEUG00000006496	-	83	98.039	Notamacropus_eugenii
ENSIPUG00000024348	skiv2l2	100	71.866	ENSOPRG00000008009	MTREX	100	72.100	Ochotona_princeps
ENSIPUG00000024348	skiv2l2	100	83.874	ENSODEG00000017234	MTREX	100	84.145	Octodon_degus
ENSIPUG00000024348	skiv2l2	100	85.852	ENSONIG00000007587	mtrex	100	85.645	Oreochromis_niloticus
ENSIPUG00000024348	skiv2l2	50	83.495	ENSOANG00000004885	-	99	83.495	Ornithorhynchus_anatinus
ENSIPUG00000024348	skiv2l2	100	85.249	ENSOCUG00000004463	MTREX	100	85.249	Oryctolagus_cuniculus
ENSIPUG00000024348	skiv2l2	100	85.549	ENSORLG00000005443	mtrex	100	85.742	Oryzias_latipes
ENSIPUG00000024348	skiv2l2	100	85.453	ENSORLG00020006329	mtrex	100	85.645	Oryzias_latipes_hni
ENSIPUG00000024348	skiv2l2	100	85.453	ENSORLG00015012924	mtrex	100	85.645	Oryzias_latipes_hsok
ENSIPUG00000024348	skiv2l2	100	85.303	ENSOMEG00000008825	mtrex	100	85.110	Oryzias_melastigma
ENSIPUG00000024348	skiv2l2	100	85.564	ENSOGAG00000002886	MTREX	100	85.578	Otolemur_garnettii
ENSIPUG00000024348	skiv2l2	100	84.776	ENSOARG00000007764	MTREX	100	85.048	Ovis_aries
ENSIPUG00000024348	skiv2l2	100	84.924	ENSPPAG00000039291	MTREX	100	85.100	Pan_paniscus
ENSIPUG00000024348	skiv2l2	100	85.482	ENSPPRG00000019701	MTREX	100	85.387	Panthera_pardus
ENSIPUG00000024348	skiv2l2	100	84.050	ENSPTIG00000009313	MTREX	100	83.954	Panthera_tigris_altaica
ENSIPUG00000024348	skiv2l2	100	84.924	ENSPTRG00000016878	MTREX	100	85.100	Pan_troglodytes
ENSIPUG00000024348	skiv2l2	100	84.990	ENSPANG00000009697	MTREX	100	85.100	Papio_anubis
ENSIPUG00000024348	skiv2l2	100	89.007	ENSPKIG00000020833	mtrex	100	89.007	Paramormyrops_kingsleyae
ENSIPUG00000024348	skiv2l2	100	86.224	ENSPSIG00000012150	MTREX	100	86.320	Pelodiscus_sinensis
ENSIPUG00000024348	skiv2l2	100	84.119	ENSPMGG00000002582	mtrex	100	83.927	Periophthalmus_magnuspinnatus
ENSIPUG00000024348	skiv2l2	95	66.802	ENSPMAG00000009668	mtrex	100	66.802	Petromyzon_marinus
ENSIPUG00000024348	skiv2l2	92	89.380	ENSPCIG00000024730	MTREX	100	89.380	Phascolarctos_cinereus
ENSIPUG00000024348	skiv2l2	76	87.959	ENSPFOG00000003141	mtrex	100	88.213	Poecilia_formosa
ENSIPUG00000024348	skiv2l2	100	86.044	ENSPLAG00000021311	mtrex	100	85.948	Poecilia_latipinna
ENSIPUG00000024348	skiv2l2	92	87.879	ENSPMEG00000010597	mtrex	99	88.088	Poecilia_mexicana
ENSIPUG00000024348	skiv2l2	100	85.852	ENSPREG00000003089	mtrex	100	85.852	Poecilia_reticulata
ENSIPUG00000024348	skiv2l2	98	85.019	ENSPPYG00000015469	MTREX	98	85.131	Pongo_abelii
ENSIPUG00000024348	skiv2l2	94	75.349	ENSPCAG00000013120	MTREX	94	75.349	Procavia_capensis
ENSIPUG00000024348	skiv2l2	99	79.538	ENSPCOG00000018092	MTREX	100	82.584	Propithecus_coquereli
ENSIPUG00000024348	skiv2l2	100	85.373	ENSPVAG00000002445	MTREX	100	85.373	Pteropus_vampyrus
ENSIPUG00000024348	skiv2l2	100	85.852	ENSPNYG00000006164	mtrex	100	85.549	Pundamilia_nyererei
ENSIPUG00000024348	skiv2l2	100	92.575	ENSPNAG00000008794	mtrex	100	92.575	Pygocentrus_nattereri
ENSIPUG00000024348	skiv2l2	98	84.533	ENSRNOG00000010125	Mtrex	96	84.533	Rattus_norvegicus
ENSIPUG00000024348	skiv2l2	100	83.365	ENSRBIG00000034930	MTREX	100	83.477	Rhinopithecus_bieti
ENSIPUG00000024348	skiv2l2	100	84.990	ENSRROG00000039895	MTREX	100	85.100	Rhinopithecus_roxellana
ENSIPUG00000024348	skiv2l2	91	55.381	YJL050W	MTR4	89	56.008	Saccharomyces_cerevisiae
ENSIPUG00000024348	skiv2l2	100	85.182	ENSSBOG00000026693	MTREX	98	87.264	Saimiri_boliviensis_boliviensis
ENSIPUG00000024348	skiv2l2	95	87.741	ENSSHAG00000004600	MTREX	99	87.741	Sarcophilus_harrisii
ENSIPUG00000024348	skiv2l2	100	88.996	ENSSFOG00015014355	skiv2l2	100	88.996	Scleropages_formosus
ENSIPUG00000024348	skiv2l2	100	85.563	ENSSMAG00000007572	mtrex	100	85.563	Scophthalmus_maximus
ENSIPUG00000024348	skiv2l2	100	86.237	ENSSDUG00000023789	mtrex	100	86.237	Seriola_dumerili
ENSIPUG00000024348	skiv2l2	100	86.141	ENSSLDG00000006301	mtrex	100	86.141	Seriola_lalandi_dorsalis
ENSIPUG00000024348	skiv2l2	100	83.239	ENSSARG00000008387	MTREX	100	82.846	Sorex_araneus
ENSIPUG00000024348	skiv2l2	90	87.065	ENSSPUG00000007071	MTREX	96	87.065	Sphenodon_punctatus
ENSIPUG00000024348	skiv2l2	100	83.205	ENSSPAG00000011319	mtrex	100	82.896	Stegastes_partitus
ENSIPUG00000024348	skiv2l2	100	85.468	ENSSSCG00000016911	MTREX	100	85.578	Sus_scrofa
ENSIPUG00000024348	skiv2l2	100	83.638	ENSTGUG00000002480	MTREX	100	83.589	Taeniopygia_guttata
ENSIPUG00000024348	skiv2l2	100	84.726	ENSTRUG00000014571	mtrex	100	84.822	Takifugu_rubripes
ENSIPUG00000024348	skiv2l2	100	69.885	ENSTBEG00000007769	MTREX	100	70.010	Tupaia_belangeri
ENSIPUG00000024348	skiv2l2	100	84.962	ENSTTRG00000008678	MTREX	100	84.962	Tursiops_truncatus
ENSIPUG00000024348	skiv2l2	100	84.924	ENSUAMG00000023061	MTREX	100	85.100	Ursus_americanus
ENSIPUG00000024348	skiv2l2	100	84.778	ENSUMAG00000009373	MTREX	99	90.160	Ursus_maritimus
ENSIPUG00000024348	skiv2l2	100	76.195	ENSVPAG00000011174	MTREX	100	75.931	Vicugna_pacos
ENSIPUG00000024348	skiv2l2	100	85.277	ENSVVUG00000021337	MTREX	100	85.387	Vulpes_vulpes
ENSIPUG00000024348	skiv2l2	100	85.701	ENSXETG00000032798	MTREX	100	85.701	Xenopus_tropicalis
ENSIPUG00000024348	skiv2l2	100	85.756	ENSXMAG00000004799	mtrex	100	85.852	Xiphophorus_maculatus