EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000024464 (Gene tree)
Gene ID: 108263181
Gene Symbol: polr1c
Alias: zgc:65973
Full Name: RNA polymerase I and III subunit C
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 5751 bases
Position: chr3:16371179-16376929
Accession: 108263181
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000036536	RNA_pol_A_bac	PF01000.26	8.4e-30	1	1
ENSIPUP00000036536	RNA_pol_L	PF01193.24	1.4e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000037965	-	1575	XM_017463730	ENSIPUP00000036536	348 (aa)	XP_017319219	A0A2D0QLQ5

Gene Model

Click here to download ENSIPUG00000024464's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03020	RNA polymerase	KEGG
ipu04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000024464's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000024464	polr1c	97	73.964	ENSG00000171453	POLR1C	100	79.839	Homo_sapiens
ENSIPUG00000024464	polr1c	99	81.375	ENSAPOG00000024356	polr1c	99	81.948	Acanthochromis_polyacanthus
ENSIPUG00000024464	polr1c	97	74.184	ENSAMEG00000012205	POLR1C	97	74.184	Ailuropoda_melanoleuca
ENSIPUG00000024464	polr1c	93	71.865	ENSACIG00000016268	polr1c	89	72.477	Amphilophus_citrinellus
ENSIPUG00000024464	polr1c	99	78.797	ENSAOCG00000011687	polr1c	96	79.370	Amphiprion_ocellaris
ENSIPUG00000024464	polr1c	99	79.656	ENSAPEG00000002433	polr1c	99	80.229	Amphiprion_percula
ENSIPUG00000024464	polr1c	99	83.285	ENSATEG00000005985	polr1c	99	83.285	Anabas_testudineus
ENSIPUG00000024464	polr1c	85	73.401	ENSAPLG00000002908	POLR1C	99	73.401	Anas_platyrhynchos
ENSIPUG00000024464	polr1c	89	73.377	ENSACAG00000009764	POLR1C	88	73.377	Anolis_carolinensis
ENSIPUG00000024464	polr1c	97	73.669	ENSANAG00000025805	POLR1C	97	73.669	Aotus_nancymaae
ENSIPUG00000024464	polr1c	54	31.250	ENSACLG00000004854	polr2c	77	31.250	Astatotilapia_calliptera
ENSIPUG00000024464	polr1c	99	82.421	ENSACLG00000006573	polr1c	99	82.997	Astatotilapia_calliptera
ENSIPUG00000024464	polr1c	100	89.080	ENSAMXG00000012062	polr1c	99	89.080	Astyanax_mexicanus
ENSIPUG00000024464	polr1c	97	74.556	ENSBTAG00000018969	POLR1C	98	74.556	Bos_taurus
ENSIPUG00000024464	polr1c	90	47.576	WBGene00019275	rpac-40	90	47.576	Caenorhabditis_elegans
ENSIPUG00000024464	polr1c	97	73.373	ENSCJAG00000005594	POLR1C	98	73.373	Callithrix_jacchus
ENSIPUG00000024464	polr1c	97	74.260	ENSCAFG00000001872	POLR1C	98	74.260	Canis_familiaris
ENSIPUG00000024464	polr1c	97	74.260	ENSCAFG00020012018	POLR1C	98	74.260	Canis_lupus_dingo
ENSIPUG00000024464	polr1c	97	74.041	ENSCHIG00000004352	POLR1C	98	74.041	Capra_hircus
ENSIPUG00000024464	polr1c	97	74.260	ENSTSYG00000011921	POLR1C	98	74.260	Carlito_syrichta
ENSIPUG00000024464	polr1c	85	76.094	ENSCAPG00000015364	POLR1C	87	76.094	Cavia_aperea
ENSIPUG00000024464	polr1c	97	74.852	ENSCPOG00000038098	POLR1C	98	74.852	Cavia_porcellus
ENSIPUG00000024464	polr1c	97	73.964	ENSCCAG00000020169	POLR1C	98	73.964	Cebus_capucinus
ENSIPUG00000024464	polr1c	97	73.964	ENSCATG00000044045	POLR1C	98	73.964	Cercocebus_atys
ENSIPUG00000024464	polr1c	97	75.148	ENSCLAG00000009266	POLR1C	98	75.148	Chinchilla_lanigera
ENSIPUG00000024464	polr1c	97	73.077	ENSCSAG00000011913	POLR1C	98	73.077	Chlorocebus_sabaeus
ENSIPUG00000024464	polr1c	60	68.095	ENSCHOG00000006601	POLR1C	99	68.095	Choloepus_hoffmanni
ENSIPUG00000024464	polr1c	99	76.676	ENSCPBG00000025203	POLR1C	99	76.676	Chrysemys_picta_bellii
ENSIPUG00000024464	polr1c	98	53.959	ENSCING00000003563	-	98	53.959	Ciona_intestinalis
ENSIPUG00000024464	polr1c	97	73.669	ENSCANG00000043167	POLR1C	98	73.669	Colobus_angolensis_palliatus
ENSIPUG00000024464	polr1c	97	73.669	ENSCGRG00001017533	Polr1c	98	73.669	Cricetulus_griseus_chok1gshd
ENSIPUG00000024464	polr1c	85	74.411	ENSCGRG00000013225	Polr1c	99	74.411	Cricetulus_griseus_crigri
ENSIPUG00000024464	polr1c	100	81.609	ENSCSEG00000018097	polr1c	100	81.609	Cynoglossus_semilaevis
ENSIPUG00000024464	polr1c	60	82.857	ENSCVAG00000005684	polr1c	87	81.651	Cyprinodon_variegatus
ENSIPUG00000024464	polr1c	99	87.791	ENSDARG00000039400	polr1c	95	87.791	Danio_rerio
ENSIPUG00000024464	polr1c	97	73.077	ENSDNOG00000042693	POLR1C	98	73.077	Dasypus_novemcinctus
ENSIPUG00000024464	polr1c	97	74.556	ENSDORG00000000429	Polr1c	98	74.556	Dipodomys_ordii
ENSIPUG00000024464	polr1c	90	52.548	FBgn0031657	CG3756	93	52.548	Drosophila_melanogaster
ENSIPUG00000024464	polr1c	97	71.006	ENSETEG00000010807	POLR1C	98	71.006	Echinops_telfairi
ENSIPUG00000024464	polr1c	97	70.536	ENSEBUG00000013725	polr1c	97	70.536	Eptatretus_burgeri
ENSIPUG00000024464	polr1c	97	73.964	ENSEASG00005003338	POLR1C	98	73.964	Equus_asinus_asinus
ENSIPUG00000024464	polr1c	97	73.964	ENSECAG00000023516	POLR1C	96	73.964	Equus_caballus
ENSIPUG00000024464	polr1c	97	75.740	ENSEEUG00000005471	POLR1C	98	75.740	Erinaceus_europaeus
ENSIPUG00000024464	polr1c	100	85.345	ENSELUG00000013027	polr1c	100	85.345	Esox_lucius
ENSIPUG00000024464	polr1c	97	73.964	ENSFCAG00000009735	POLR1C	98	73.964	Felis_catus
ENSIPUG00000024464	polr1c	92	73.209	ENSFALG00000012111	POLR1C	99	73.209	Ficedula_albicollis
ENSIPUG00000024464	polr1c	97	74.556	ENSFDAG00000008428	POLR1C	98	74.556	Fukomys_damarensis
ENSIPUG00000024464	polr1c	99	69.855	ENSFHEG00000000262	polr1c	99	70.145	Fundulus_heteroclitus
ENSIPUG00000024464	polr1c	92	81.677	ENSGMOG00000013878	polr1c	99	81.677	Gadus_morhua
ENSIPUG00000024464	polr1c	97	73.077	ENSGALG00000010349	POLR1C	98	73.077	Gallus_gallus
ENSIPUG00000024464	polr1c	99	80.516	ENSGAFG00000010153	polr1c	99	80.802	Gambusia_affinis
ENSIPUG00000024464	polr1c	99	77.937	ENSGACG00000002453	polr1c	99	78.797	Gasterosteus_aculeatus
ENSIPUG00000024464	polr1c	99	76.093	ENSGAGG00000010640	POLR1C	99	76.093	Gopherus_agassizii
ENSIPUG00000024464	polr1c	97	73.964	ENSGGOG00000010903	POLR1C	98	73.964	Gorilla_gorilla
ENSIPUG00000024464	polr1c	99	75.802	ENSHBUG00000017816	polr1c	99	75.802	Haplochromis_burtoni
ENSIPUG00000024464	polr1c	54	31.250	ENSHBUG00000023040	polr2c	77	31.250	Haplochromis_burtoni
ENSIPUG00000024464	polr1c	97	74.260	ENSHGLG00000019441	POLR1C	98	74.260	Heterocephalus_glaber_female
ENSIPUG00000024464	polr1c	97	74.556	ENSHGLG00100005970	POLR1C	98	74.556	Heterocephalus_glaber_male
ENSIPUG00000024464	polr1c	97	76.968	ENSHCOG00000002179	polr1c	98	76.968	Hippocampus_comes
ENSIPUG00000024464	polr1c	97	74.260	ENSSTOG00000010631	POLR1C	98	74.260	Ictidomys_tridecemlineatus
ENSIPUG00000024464	polr1c	97	74.556	ENSJJAG00000023110	Polr1c	98	74.556	Jaculus_jaculus
ENSIPUG00000024464	polr1c	99	79.370	ENSKMAG00000014305	polr1c	97	79.943	Kryptolebias_marmoratus
ENSIPUG00000024464	polr1c	99	81.844	ENSLBEG00000014925	polr1c	99	82.421	Labrus_bergylta
ENSIPUG00000024464	polr1c	93	59.146	ENSLACG00000012567	POLR1C	97	59.146	Latimeria_chalumnae
ENSIPUG00000024464	polr1c	99	82.216	ENSLOCG00000016710	polr1c	94	82.216	Lepisosteus_oculatus
ENSIPUG00000024464	polr1c	86	74.916	ENSLAFG00000026248	POLR1C	99	74.916	Loxodonta_africana
ENSIPUG00000024464	polr1c	97	73.964	ENSMFAG00000046295	POLR1C	98	73.964	Macaca_fascicularis
ENSIPUG00000024464	polr1c	97	73.964	ENSMMUG00000015192	POLR1C	98	73.964	Macaca_mulatta
ENSIPUG00000024464	polr1c	97	73.964	ENSMNEG00000028073	POLR1C	98	73.964	Macaca_nemestrina
ENSIPUG00000024464	polr1c	97	73.669	ENSMLEG00000034818	POLR1C	98	73.669	Mandrillus_leucophaeus
ENSIPUG00000024464	polr1c	99	83.095	ENSMAMG00000008700	polr1c	99	83.095	Mastacembelus_armatus
ENSIPUG00000024464	polr1c	99	82.133	ENSMZEG00005018545	polr1c	99	82.709	Maylandia_zebra
ENSIPUG00000024464	polr1c	83	69.792	ENSMGAG00000011020	POLR1C	99	69.792	Meleagris_gallopavo
ENSIPUG00000024464	polr1c	97	73.669	ENSMAUG00000014329	Polr1c	98	73.669	Mesocricetus_auratus
ENSIPUG00000024464	polr1c	97	73.077	ENSMICG00000005027	POLR1C	98	73.077	Microcebus_murinus
ENSIPUG00000024464	polr1c	97	74.556	ENSMOCG00000017549	Polr1c	98	74.556	Microtus_ochrogaster
ENSIPUG00000024464	polr1c	99	67.055	ENSMMOG00000005380	polr1c	99	67.347	Mola_mola
ENSIPUG00000024464	polr1c	83	76.125	ENSMODG00000018964	POLR1C	99	76.125	Monodelphis_domestica
ENSIPUG00000024464	polr1c	99	72.303	ENSMALG00000011711	polr1c	99	72.595	Monopterus_albus
ENSIPUG00000024464	polr1c	97	64.095	MGP_CAROLIEiJ_G0021662	Polr1c	99	71.984	Mus_caroli
ENSIPUG00000024464	polr1c	97	74.184	ENSMUSG00000067148	Polr1c	93	80.208	Mus_musculus
ENSIPUG00000024464	polr1c	97	74.184	MGP_PahariEiJ_G0020654	Polr1c	93	81.250	Mus_pahari
ENSIPUG00000024464	polr1c	97	74.184	MGP_SPRETEiJ_G0022574	Polr1c	93	80.208	Mus_spretus
ENSIPUG00000024464	polr1c	97	74.260	ENSMPUG00000012916	POLR1C	89	74.260	Mustela_putorius_furo
ENSIPUG00000024464	polr1c	97	74.852	ENSMLUG00000017751	POLR1C	97	74.852	Myotis_lucifugus
ENSIPUG00000024464	polr1c	97	73.964	ENSNGAG00000023487	Polr1c	99	74.394	Nannospalax_galili
ENSIPUG00000024464	polr1c	99	81.844	ENSNBRG00000018742	polr1c	99	82.421	Neolamprologus_brichardi
ENSIPUG00000024464	polr1c	97	73.964	ENSNLEG00000004035	POLR1C	98	73.964	Nomascus_leucogenys
ENSIPUG00000024464	polr1c	97	63.314	ENSMEUG00000006778	POLR1C	98	63.314	Notamacropus_eugenii
ENSIPUG00000024464	polr1c	75	75.096	ENSOPRG00000000145	POLR1C	97	75.096	Ochotona_princeps
ENSIPUG00000024464	polr1c	62	70.968	ENSODEG00000017109	-	99	70.968	Octodon_degus
ENSIPUG00000024464	polr1c	97	75.444	ENSODEG00000015831	-	98	75.444	Octodon_degus
ENSIPUG00000024464	polr1c	99	82.421	ENSONIG00000013133	polr1c	97	82.997	Oreochromis_niloticus
ENSIPUG00000024464	polr1c	97	71.302	ENSOANG00000003043	POLR1C	98	71.302	Ornithorhynchus_anatinus
ENSIPUG00000024464	polr1c	97	74.260	ENSOCUG00000005504	POLR1C	97	74.260	Oryctolagus_cuniculus
ENSIPUG00000024464	polr1c	99	78.098	ENSORLG00000019743	polr1c	99	78.098	Oryzias_latipes
ENSIPUG00000024464	polr1c	76	62.044	ENSORLG00020005555	polr1c	81	62.044	Oryzias_latipes_hni
ENSIPUG00000024464	polr1c	99	78.963	ENSORLG00020006489	POLR1C	99	78.963	Oryzias_latipes_hni
ENSIPUG00000024464	polr1c	99	78.098	ENSORLG00015013322	polr1c	99	78.098	Oryzias_latipes_hsok
ENSIPUG00000024464	polr1c	98	79.130	ENSOMEG00000016527	polr1c	98	79.130	Oryzias_melastigma
ENSIPUG00000024464	polr1c	97	74.118	ENSOGAG00000016318	POLR1C	98	74.118	Otolemur_garnettii
ENSIPUG00000024464	polr1c	97	74.260	ENSOARG00000007503	POLR1C	98	74.260	Ovis_aries
ENSIPUG00000024464	polr1c	97	73.964	ENSPPAG00000043678	POLR1C	98	73.964	Pan_paniscus
ENSIPUG00000024464	polr1c	97	73.964	ENSPPRG00000009760	POLR1C	98	73.964	Panthera_pardus
ENSIPUG00000024464	polr1c	97	73.964	ENSPTIG00000014813	POLR1C	98	73.964	Panthera_tigris_altaica
ENSIPUG00000024464	polr1c	97	73.964	ENSPTRG00000018202	POLR1C	98	73.964	Pan_troglodytes
ENSIPUG00000024464	polr1c	97	73.964	ENSPANG00000009025	POLR1C	97	73.964	Papio_anubis
ENSIPUG00000024464	polr1c	99	82.507	ENSPKIG00000009858	polr1c	99	82.507	Paramormyrops_kingsleyae
ENSIPUG00000024464	polr1c	98	77.713	ENSPSIG00000012580	POLR1C	93	77.713	Pelodiscus_sinensis
ENSIPUG00000024464	polr1c	99	69.679	ENSPMGG00000012121	polr1c	99	69.971	Periophthalmus_magnuspinnatus
ENSIPUG00000024464	polr1c	57	30.846	ENSPMGG00000021249	polr2c	78	30.846	Periophthalmus_magnuspinnatus
ENSIPUG00000024464	polr1c	97	73.669	ENSPEMG00000006970	Polr1c	98	73.669	Peromyscus_maniculatus_bairdii
ENSIPUG00000024464	polr1c	58	33.649	ENSPMAG00000004827	polr2c	85	33.649	Petromyzon_marinus
ENSIPUG00000024464	polr1c	99	70.809	ENSPMAG00000005560	polr1c	99	70.809	Petromyzon_marinus
ENSIPUG00000024464	polr1c	97	74.852	ENSPCIG00000028137	POLR1C	96	74.852	Phascolarctos_cinereus
ENSIPUG00000024464	polr1c	99	80.516	ENSPFOG00000014357	polr1c	98	80.802	Poecilia_formosa
ENSIPUG00000024464	polr1c	99	80.516	ENSPFOG00000014342	POLR1C	99	80.802	Poecilia_formosa
ENSIPUG00000024464	polr1c	60	81.429	ENSPLAG00000004111	polr1c	99	75.105	Poecilia_latipinna
ENSIPUG00000024464	polr1c	99	80.516	ENSPMEG00000008420	polr1c	99	80.802	Poecilia_mexicana
ENSIPUG00000024464	polr1c	99	80.516	ENSPMEG00000011877	-	99	80.802	Poecilia_mexicana
ENSIPUG00000024464	polr1c	99	81.739	ENSPREG00000007985	polr1c	99	81.739	Poecilia_reticulata
ENSIPUG00000024464	polr1c	97	73.964	ENSPPYG00000016645	POLR1C	98	73.964	Pongo_abelii
ENSIPUG00000024464	polr1c	97	73.669	ENSPCOG00000024628	POLR1C	98	73.669	Propithecus_coquereli
ENSIPUG00000024464	polr1c	97	68.047	ENSPVAG00000005689	POLR1C	98	68.047	Pteropus_vampyrus
ENSIPUG00000024464	polr1c	99	82.235	ENSPNYG00000003620	polr1c	99	82.709	Pundamilia_nyererei
ENSIPUG00000024464	polr1c	100	91.667	ENSPNAG00000008443	polr1c	100	91.667	Pygocentrus_nattereri
ENSIPUG00000024464	polr1c	97	73.591	ENSRNOG00000019079	Polr1c	97	73.591	Rattus_norvegicus
ENSIPUG00000024464	polr1c	97	73.669	ENSRBIG00000007155	POLR1C	98	73.669	Rhinopithecus_bieti
ENSIPUG00000024464	polr1c	97	73.964	ENSRROG00000000257	POLR1C	98	73.964	Rhinopithecus_roxellana
ENSIPUG00000024464	polr1c	90	50.789	YPR110C	RPC40	94	50.789	Saccharomyces_cerevisiae
ENSIPUG00000024464	polr1c	97	73.964	ENSSBOG00000025735	POLR1C	97	74.419	Saimiri_boliviensis_boliviensis
ENSIPUG00000024464	polr1c	97	66.864	ENSSHAG00000014456	POLR1C	98	66.864	Sarcophilus_harrisii
ENSIPUG00000024464	polr1c	100	85.920	ENSSFOG00015019860	polr1c	100	85.920	Scleropages_formosus
ENSIPUG00000024464	polr1c	100	83.046	ENSSMAG00000018865	polr1c	100	83.046	Scophthalmus_maximus
ENSIPUG00000024464	polr1c	99	83.862	ENSSDUG00000015745	polr1c	90	84.438	Seriola_dumerili
ENSIPUG00000024464	polr1c	99	83.573	ENSSLDG00000018285	polr1c	90	84.150	Seriola_lalandi_dorsalis
ENSIPUG00000024464	polr1c	98	71.053	ENSSPUG00000011822	POLR1C	99	71.053	Sphenodon_punctatus
ENSIPUG00000024464	polr1c	99	80.229	ENSSPAG00000022369	polr1c	99	80.802	Stegastes_partitus
ENSIPUG00000024464	polr1c	97	73.964	ENSSSCG00000028007	POLR1C	96	74.247	Sus_scrofa
ENSIPUG00000024464	polr1c	95	73.030	ENSTGUG00000009159	POLR1C	98	73.030	Taeniopygia_guttata
ENSIPUG00000024464	polr1c	99	77.810	ENSTRUG00000006264	polr1c	99	77.810	Takifugu_rubripes
ENSIPUG00000024464	polr1c	51	70.455	ENSTBEG00000002254	POLR1C	99	70.455	Tupaia_belangeri
ENSIPUG00000024464	polr1c	75	70.881	ENSTTRG00000006344	POLR1C	75	70.881	Tursiops_truncatus
ENSIPUG00000024464	polr1c	97	74.481	ENSUAMG00000025602	POLR1C	97	74.481	Ursus_americanus
ENSIPUG00000024464	polr1c	97	74.481	ENSUMAG00000005938	POLR1C	97	74.481	Ursus_maritimus
ENSIPUG00000024464	polr1c	97	71.893	ENSVVUG00000028922	POLR1C	98	71.893	Vulpes_vulpes
ENSIPUG00000024464	polr1c	99	72.093	ENSXETG00000010882	polr1c	99	72.093	Xenopus_tropicalis
ENSIPUG00000024464	polr1c	99	81.214	ENSXCOG00000014185	polr1c	99	81.214	Xiphophorus_couchianus
ENSIPUG00000024464	polr1c	99	80.516	ENSXMAG00000015076	polr1c	99	80.802	Xiphophorus_maculatus