EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000024556 (Gene tree)
Gene ID: -
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 6308 bases
Position: chr10:12064131-12070438
Accession: ZDB-GENE-030131-6986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000036668	RRM_1	PF00076.22	2.5e-54	1	3
ENSIPUP00000036668	RRM_1	PF00076.22	2.5e-54	2	3
ENSIPUP00000036668	RRM_1	PF00076.22	2.5e-54	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000038103	-	1173	-	ENSIPUP00000036668	390 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000024556's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000024556's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000024556	ncl	77	30.636	ENSIPUG00000012602	pabpc1l	61	30.058

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000024556	ncl	86	40.909	ENSAPOG00000014534	-	55	40.625	Acanthochromis_polyacanthus
ENSIPUG00000024556	ncl	81	76.144	ENSAPOG00000023888	ncl	55	75.817	Acanthochromis_polyacanthus
ENSIPUG00000024556	ncl	78	70.957	ENSACIG00000013234	ncl	51	70.297	Amphilophus_citrinellus
ENSIPUG00000024556	ncl	81	76.144	ENSAOCG00000003133	ncl	52	75.817	Amphiprion_ocellaris
ENSIPUG00000024556	ncl	86	39.489	ENSAOCG00000014792	-	60	40.000	Amphiprion_ocellaris
ENSIPUG00000024556	ncl	81	76.144	ENSAPEG00000002769	ncl	52	75.817	Amphiprion_percula
ENSIPUG00000024556	ncl	86	39.773	ENSAPEG00000013612	-	60	40.312	Amphiprion_percula
ENSIPUG00000024556	ncl	94	42.564	ENSATEG00000019862	-	79	43.653	Anabas_testudineus
ENSIPUG00000024556	ncl	81	74.837	ENSATEG00000013343	ncl	53	73.203	Anabas_testudineus
ENSIPUG00000024556	ncl	86	57.478	ENSAPLG00000012897	-	63	60.323	Anas_platyrhynchos
ENSIPUG00000024556	ncl	79	67.638	ENSACLG00000026031	ncl	84	66.990	Astatotilapia_calliptera
ENSIPUG00000024556	ncl	79	79.355	ENSAMXG00000001647	ncl	82	77.451	Astyanax_mexicanus
ENSIPUG00000024556	ncl	77	43.182	ENSCHIG00000012665	-	54	42.453	Capra_hircus
ENSIPUG00000024556	ncl	85	49.321	ENSCHIG00000003401	-	52	49.107	Capra_hircus
ENSIPUG00000024556	ncl	83	70.405	ENSCSEG00000015089	ncl	56	70.405	Cynoglossus_semilaevis
ENSIPUG00000024556	ncl	80	79.618	ENSDARG00000002710	ncl	81	79.299	Danio_rerio
ENSIPUG00000024556	ncl	60	50.676	ENSDNOG00000040440	-	96	50.350	Dasypus_novemcinctus
ENSIPUG00000024556	ncl	78	48.232	ENSDNOG00000040257	-	52	46.729	Dasypus_novemcinctus
ENSIPUG00000024556	ncl	85	47.682	ENSDNOG00000031611	-	62	47.386	Dasypus_novemcinctus
ENSIPUG00000024556	ncl	79	52.396	ENSELUG00000022826	-	66	52.117	Esox_lucius
ENSIPUG00000024556	ncl	81	68.421	ENSELUG00000006033	ncl	52	68.269	Esox_lucius
ENSIPUG00000024556	ncl	81	67.647	ENSFHEG00000018000	ncl	58	66.139	Fundulus_heteroclitus
ENSIPUG00000024556	ncl	81	63.175	ENSGMOG00000001341	ncl	54	62.620	Gadus_morhua
ENSIPUG00000024556	ncl	78	68.387	ENSGACG00000008970	ncl	51	67.619	Gasterosteus_aculeatus
ENSIPUG00000024556	ncl	81	71.148	ENSHBUG00000006869	ncl	52	70.820	Haplochromis_burtoni
ENSIPUG00000024556	ncl	88	70.640	ENSHCOG00000010234	ncl	52	73.248	Hippocampus_comes
ENSIPUG00000024556	ncl	81	75.817	ENSLBEG00000019073	ncl	55	75.817	Labrus_bergylta
ENSIPUG00000024556	ncl	82	40.719	ENSLBEG00000014278	-	72	41.066	Labrus_bergylta
ENSIPUG00000024556	ncl	85	40.719	ENSLBEG00000007915	-	63	41.066	Labrus_bergylta
ENSIPUG00000024556	ncl	84	67.628	ENSLACG00000009328	ncl	58	67.089	Latimeria_chalumnae
ENSIPUG00000024556	ncl	78	53.871	ENSLACG00000022167	-	65	54.426	Latimeria_chalumnae
ENSIPUG00000024556	ncl	85	40.805	ENSMAMG00000003479	-	58	40.312	Mastacembelus_armatus
ENSIPUG00000024556	ncl	81	70.820	ENSMZEG00005017438	ncl	52	70.492	Maylandia_zebra
ENSIPUG00000024556	ncl	78	62.258	ENSMGAG00000008147	-	78	62.222	Meleagris_gallopavo
ENSIPUG00000024556	ncl	80	73.482	ENSMMOG00000008553	ncl	84	74.441	Mola_mola
ENSIPUG00000024556	ncl	84	58.133	ENSMODG00000002470	-	50	57.402	Monodelphis_domestica
ENSIPUG00000024556	ncl	77	42.045	ENSMPUG00000001663	-	57	41.288	Mustela_putorius_furo
ENSIPUG00000024556	ncl	72	70.819	ENSNBRG00000000146	-	82	70.463	Neolamprologus_brichardi
ENSIPUG00000024556	ncl	72	70.819	ENSNBRG00000001232	ncl	79	70.463	Neolamprologus_brichardi
ENSIPUG00000024556	ncl	84	58.951	ENSMEUG00000012335	-	51	58.204	Notamacropus_eugenii
ENSIPUG00000024556	ncl	81	71.148	ENSONIG00000012508	ncl	52	70.820	Oreochromis_niloticus
ENSIPUG00000024556	ncl	78	36.928	ENSONIG00000010631	-	92	37.294	Oreochromis_niloticus
ENSIPUG00000024556	ncl	80	60.129	ENSOANG00000008732	-	62	60.450	Ornithorhynchus_anatinus
ENSIPUG00000024556	ncl	82	37.500	ENSORLG00000004645	-	69	37.812	Oryzias_latipes
ENSIPUG00000024556	ncl	82	37.798	ENSORLG00020003497	-	62	38.125	Oryzias_latipes_hni
ENSIPUG00000024556	ncl	80	70.288	ENSORLG00015013815	ncl	86	71.565	Oryzias_latipes_hsok
ENSIPUG00000024556	ncl	82	37.168	ENSORLG00015006613	-	64	38.125	Oryzias_latipes_hsok
ENSIPUG00000024556	ncl	81	34.925	ENSOMEG00000015864	-	68	35.514	Oryzias_melastigma
ENSIPUG00000024556	ncl	80	74.277	ENSPKIG00000002604	ncl	52	74.026	Paramormyrops_kingsleyae
ENSIPUG00000024556	ncl	81	63.924	ENSPSIG00000002361	-	54	63.462	Pelodiscus_sinensis
ENSIPUG00000024556	ncl	80	71.246	ENSPMGG00000004709	ncl	81	71.246	Periophthalmus_magnuspinnatus
ENSIPUG00000024556	ncl	84	58.006	ENSPCIG00000003293	-	50	57.273	Phascolarctos_cinereus
ENSIPUG00000024556	ncl	81	70.820	ENSPNYG00000020494	ncl	53	70.492	Pundamilia_nyererei
ENSIPUG00000024556	ncl	80	54.984	ENSSHAG00000002702	-	54	54.286	Sarcophilus_harrisii
ENSIPUG00000024556	ncl	79	76.452	ENSSFOG00015008583	ncl	56	73.502	Scleropages_formosus
ENSIPUG00000024556	ncl	78	41.558	ENSSFOG00015013153	-	77	41.558	Scleropages_formosus
ENSIPUG00000024556	ncl	81	42.727	ENSSMAG00000007582	-	51	42.722	Scophthalmus_maximus
ENSIPUG00000024556	ncl	81	72.168	ENSSMAG00000021241	ncl	53	72.168	Scophthalmus_maximus
ENSIPUG00000024556	ncl	89	42.308	ENSSDUG00000010922	-	59	42.812	Seriola_dumerili
ENSIPUG00000024556	ncl	97	67.624	ENSSDUG00000006128	ncl	84	75.329	Seriola_dumerili
ENSIPUG00000024556	ncl	89	42.265	ENSSLDG00000015784	-	54	42.138	Seriola_lalandi_dorsalis
ENSIPUG00000024556	ncl	81	74.510	ENSSLDG00000002012	ncl	52	74.837	Seriola_lalandi_dorsalis
ENSIPUG00000024556	ncl	86	42.775	ENSSPAG00000001859	-	51	42.994	Stegastes_partitus
ENSIPUG00000024556	ncl	72	74.468	ENSSPAG00000002637	ncl	79	74.468	Stegastes_partitus
ENSIPUG00000024556	ncl	80	59.688	ENSTGUG00000009782	-	50	59.062	Taeniopygia_guttata
ENSIPUG00000024556	ncl	81	72.549	ENSTRUG00000008185	ncl	55	72.222	Takifugu_rubripes
ENSIPUG00000024556	ncl	79	74.671	ENSTNIG00000012186	ncl	59	73.856	Tetraodon_nigroviridis
ENSIPUG00000024556	ncl	78	56.579	ENSXCOG00000003524	ncl	83	56.209	Xiphophorus_couchianus
ENSIPUG00000024556	ncl	86	37.651	ENSXCOG00000007369	-	89	38.291	Xiphophorus_couchianus