EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000024569 (Gene tree)
Gene ID: 108272150
Gene Symbol: SNRPB
Alias: zgc:77315
Full Name: small nuclear ribonucleoprotein-associated protein B'
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 11354 bases
Position: chr11:20424805-20436158
Accession: 108272150
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000036687	LSM	PF01423.22	9.2e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000038123	-	5458	XM_017480377	ENSIPUP00000036687	238 (aa)	XP_017335866	W5UCM6

Gene Model

Click here to download ENSIPUG00000024569's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000024569's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000024569	SNRPB	70	94.643	ENSG00000125835	SNRPB	74	100.000	Homo_sapiens
ENSIPUG00000024569	SNRPB	99	97.479	ENSAPOG00000019606	snrpb	81	97.479	Acanthochromis_polyacanthus
ENSIPUG00000024569	SNRPB	69	94.611	ENSAMEG00000011353	SNRPB	69	92.814	Ailuropoda_melanoleuca
ENSIPUG00000024569	SNRPB	93	97.309	ENSACIG00000014480	snrpb	99	97.309	Amphilophus_citrinellus
ENSIPUG00000024569	SNRPB	99	97.059	ENSAOCG00000006876	snrpb	99	97.059	Amphiprion_ocellaris
ENSIPUG00000024569	SNRPB	99	97.059	ENSAPEG00000021585	snrpb	99	97.059	Amphiprion_percula
ENSIPUG00000024569	SNRPB	99	96.639	ENSATEG00000009836	snrpb	99	96.639	Anabas_testudineus
ENSIPUG00000024569	SNRPB	66	95.625	ENSACAG00000002053	SNRPB	69	94.375	Anolis_carolinensis
ENSIPUG00000024569	SNRPB	96	87.879	ENSANAG00000036271	-	68	85.119	Aotus_nancymaae
ENSIPUG00000024569	SNRPB	70	94.643	ENSANAG00000024443	-	73	92.857	Aotus_nancymaae
ENSIPUG00000024569	SNRPB	99	97.479	ENSACLG00000014707	snrpb	99	97.479	Astatotilapia_calliptera
ENSIPUG00000024569	SNRPB	100	99.160	ENSAMXG00000029434	snrpb	100	99.160	Astyanax_mexicanus
ENSIPUG00000024569	SNRPB	91	83.710	ENSBTAG00000001038	SNRPB	73	93.452	Bos_taurus
ENSIPUG00000024569	SNRPB	70	94.643	ENSCJAG00000020971	-	73	92.857	Callithrix_jacchus
ENSIPUG00000024569	SNRPB	89	86.449	ENSCJAG00000023097	-	70	86.905	Callithrix_jacchus
ENSIPUG00000024569	SNRPB	70	94.643	ENSCAFG00000006693	-	73	92.857	Canis_familiaris
ENSIPUG00000024569	SNRPB	76	81.522	ENSCAFG00000031109	-	70	81.657	Canis_familiaris
ENSIPUG00000024569	SNRPB	70	94.643	ENSCAFG00020016981	-	70	92.857	Canis_lupus_dingo
ENSIPUG00000024569	SNRPB	76	94.536	ENSCHIG00000025449	-	73	93.452	Capra_hircus
ENSIPUG00000024569	SNRPB	97	73.478	ENSTSYG00000032303	-	55	76.000	Carlito_syrichta
ENSIPUG00000024569	SNRPB	70	94.643	ENSTSYG00000014498	-	73	92.857	Carlito_syrichta
ENSIPUG00000024569	SNRPB	69	94.611	ENSCAPG00000012669	SNRPB	73	92.814	Cavia_aperea
ENSIPUG00000024569	SNRPB	70	94.643	ENSCPOG00000039408	SNRPB	73	92.857	Cavia_porcellus
ENSIPUG00000024569	SNRPB	70	94.643	ENSCCAG00000026002	SNRPB	73	92.857	Cebus_capucinus
ENSIPUG00000024569	SNRPB	53	83.465	ENSCCAG00000035140	-	89	86.275	Cebus_capucinus
ENSIPUG00000024569	SNRPB	70	94.643	ENSCATG00000030230	SNRPB	73	92.857	Cercocebus_atys
ENSIPUG00000024569	SNRPB	70	94.643	ENSCLAG00000012442	SNRPB	71	92.857	Chinchilla_lanigera
ENSIPUG00000024569	SNRPB	70	94.643	ENSCSAG00000010840	SNRPB	73	92.857	Chlorocebus_sabaeus
ENSIPUG00000024569	SNRPB	100	97.083	ENSCPBG00000026801	SNRPB	100	97.083	Chrysemys_picta_bellii
ENSIPUG00000024569	SNRPB	70	94.643	ENSCANG00000019461	SNRPB	73	92.857	Colobus_angolensis_palliatus
ENSIPUG00000024569	SNRPB	70	94.643	ENSCGRG00001023046	Snrpb	73	92.857	Cricetulus_griseus_chok1gshd
ENSIPUG00000024569	SNRPB	68	94.479	ENSCGRG00000010423	Snrpb	71	93.125	Cricetulus_griseus_crigri
ENSIPUG00000024569	SNRPB	99	98.305	ENSCSEG00000020328	snrpb	99	98.305	Cynoglossus_semilaevis
ENSIPUG00000024569	SNRPB	99	99.576	ENSDARG00000011125	snrpb	99	99.576	Danio_rerio
ENSIPUG00000024569	SNRPB	70	88.690	ENSDNOG00000007896	-	69	87.500	Dasypus_novemcinctus
ENSIPUG00000024569	SNRPB	70	94.643	ENSDNOG00000015545	-	70	92.857	Dasypus_novemcinctus
ENSIPUG00000024569	SNRPB	74	94.350	ENSDORG00000029558	Snrpb	70	93.210	Dipodomys_ordii
ENSIPUG00000024569	SNRPB	63	69.799	FBgn0262601	SmB	74	69.799	Drosophila_melanogaster
ENSIPUG00000024569	SNRPB	75	81.522	ENSEBUG00000007467	SNRPB	62	89.262	Eptatretus_burgeri
ENSIPUG00000024569	SNRPB	70	94.048	ENSEASG00005012991	SNRPB	73	92.857	Equus_asinus_asinus
ENSIPUG00000024569	SNRPB	70	94.643	ENSECAG00000011944	SNRPB	73	92.857	Equus_caballus
ENSIPUG00000024569	SNRPB	70	94.643	ENSEEUG00000015568	SNRPB	59	92.857	Erinaceus_europaeus
ENSIPUG00000024569	SNRPB	100	97.899	ENSELUG00000014564	snrpb	100	97.899	Esox_lucius
ENSIPUG00000024569	SNRPB	70	94.643	ENSFCAG00000034090	-	73	92.857	Felis_catus
ENSIPUG00000024569	SNRPB	73	95.429	ENSFALG00000004866	SNRPB	69	95.000	Ficedula_albicollis
ENSIPUG00000024569	SNRPB	70	94.643	ENSFDAG00000009937	SNRPB	73	92.857	Fukomys_damarensis
ENSIPUG00000024569	SNRPB	76	95.628	ENSGALG00000035421	SNRPN	70	94.643	Gallus_gallus
ENSIPUG00000024569	SNRPB	71	98.235	ENSGAFG00000019558	snrpb	72	98.182	Gambusia_affinis
ENSIPUG00000024569	SNRPB	99	97.458	ENSGACG00000003262	snrpb	99	97.458	Gasterosteus_aculeatus
ENSIPUG00000024569	SNRPB	100	97.083	ENSGAGG00000001308	SNRPB	100	97.083	Gopherus_agassizii
ENSIPUG00000024569	SNRPB	70	94.643	ENSGGOG00000016138	SNRPB	73	92.857	Gorilla_gorilla
ENSIPUG00000024569	SNRPB	99	97.479	ENSHBUG00000008369	snrpb	99	97.479	Haplochromis_burtoni
ENSIPUG00000024569	SNRPB	63	86.000	ENSHGLG00000016505	-	72	86.000	Heterocephalus_glaber_female
ENSIPUG00000024569	SNRPB	70	94.643	ENSHGLG00000016241	-	73	92.857	Heterocephalus_glaber_female
ENSIPUG00000024569	SNRPB	63	86.000	ENSHGLG00100004178	-	72	86.000	Heterocephalus_glaber_male
ENSIPUG00000024569	SNRPB	70	94.643	ENSHGLG00100012877	-	73	92.857	Heterocephalus_glaber_male
ENSIPUG00000024569	SNRPB	99	97.881	ENSHCOG00000014888	snrpb	99	97.881	Hippocampus_comes
ENSIPUG00000024569	SNRPB	90	78.037	ENSSTOG00000027821	-	62	94.853	Ictidomys_tridecemlineatus
ENSIPUG00000024569	SNRPB	70	92.857	ENSSTOG00000033664	-	70	91.667	Ictidomys_tridecemlineatus
ENSIPUG00000024569	SNRPB	70	94.643	ENSJJAG00000024170	Snrpb	73	92.857	Jaculus_jaculus
ENSIPUG00000024569	SNRPB	95	96.943	ENSKMAG00000014494	snrpb	93	96.943	Kryptolebias_marmoratus
ENSIPUG00000024569	SNRPB	99	98.305	ENSLBEG00000005678	snrpb	99	98.305	Labrus_bergylta
ENSIPUG00000024569	SNRPB	100	95.417	ENSLACG00000011459	SNRPB	100	95.417	Latimeria_chalumnae
ENSIPUG00000024569	SNRPB	100	99.580	ENSLOCG00000002687	snrpb	100	99.580	Lepisosteus_oculatus
ENSIPUG00000024569	SNRPB	76	90.110	ENSLAFG00000017588	SNRPB	71	88.024	Loxodonta_africana
ENSIPUG00000024569	SNRPB	70	94.643	ENSMFAG00000038756	SNRPB	73	92.857	Macaca_fascicularis
ENSIPUG00000024569	SNRPB	70	94.643	ENSMMUG00000010050	SNRPB	73	92.857	Macaca_mulatta
ENSIPUG00000024569	SNRPB	70	94.643	ENSMNEG00000027954	SNRPB	73	92.857	Macaca_nemestrina
ENSIPUG00000024569	SNRPB	70	94.643	ENSMLEG00000022346	SNRPB	73	92.857	Mandrillus_leucophaeus
ENSIPUG00000024569	SNRPB	99	97.468	ENSMAMG00000009294	snrpb	96	97.468	Mastacembelus_armatus
ENSIPUG00000024569	SNRPB	99	97.479	ENSMZEG00005011856	snrpb	99	97.479	Maylandia_zebra
ENSIPUG00000024569	SNRPB	76	94.536	ENSMICG00000016519	SNRPB	73	93.452	Microcebus_murinus
ENSIPUG00000024569	SNRPB	75	84.530	ENSMICG00000015983	-	77	83.333	Microcebus_murinus
ENSIPUG00000024569	SNRPB	70	94.048	ENSMOCG00000002892	-	73	92.857	Microtus_ochrogaster
ENSIPUG00000024569	SNRPB	58	78.417	ENSMOCG00000021362	-	58	78.417	Microtus_ochrogaster
ENSIPUG00000024569	SNRPB	95	98.230	ENSMMOG00000013226	snrpb	97	98.230	Mola_mola
ENSIPUG00000024569	SNRPB	99	96.639	ENSMALG00000020839	snrpb	80	96.639	Monopterus_albus
ENSIPUG00000024569	SNRPB	70	94.643	MGP_CAROLIEiJ_G0024293	Snrpb	74	100.000	Mus_caroli
ENSIPUG00000024569	SNRPB	70	94.643	ENSMUSG00000027404	Snrpb	74	100.000	Mus_musculus
ENSIPUG00000024569	SNRPB	70	94.643	MGP_PahariEiJ_G0025738	Snrpb	74	100.000	Mus_pahari
ENSIPUG00000024569	SNRPB	70	94.643	MGP_SPRETEiJ_G0025213	Snrpb	73	100.000	Mus_spretus
ENSIPUG00000024569	SNRPB	70	94.643	ENSMPUG00000009283	SNRPB	73	92.857	Mustela_putorius_furo
ENSIPUG00000024569	SNRPB	92	90.045	ENSMLUG00000016951	SNRPB	92	90.498	Myotis_lucifugus
ENSIPUG00000024569	SNRPB	70	94.643	ENSNGAG00000012051	Snrpb	73	92.857	Nannospalax_galili
ENSIPUG00000024569	SNRPB	95	95.197	ENSNBRG00000006353	snrpb	87	95.197	Neolamprologus_brichardi
ENSIPUG00000024569	SNRPB	70	94.643	ENSNLEG00000029067	SNRPB	70	93.413	Nomascus_leucogenys
ENSIPUG00000024569	SNRPB	69	94.611	ENSMEUG00000015625	SNRPB	74	93.413	Notamacropus_eugenii
ENSIPUG00000024569	SNRPB	70	89.286	ENSODEG00000016060	-	70	88.095	Octodon_degus
ENSIPUG00000024569	SNRPB	70	94.643	ENSODEG00000004305	-	73	92.857	Octodon_degus
ENSIPUG00000024569	SNRPB	99	97.479	ENSONIG00000000248	snrpb	99	97.479	Oreochromis_niloticus
ENSIPUG00000024569	SNRPB	76	94.536	ENSOCUG00000014042	-	70	92.857	Oryctolagus_cuniculus
ENSIPUG00000024569	SNRPB	89	92.019	ENSOCUG00000028215	-	70	91.071	Oryctolagus_cuniculus
ENSIPUG00000024569	SNRPB	89	89.767	ENSOCUG00000021456	-	70	89.286	Oryctolagus_cuniculus
ENSIPUG00000024569	SNRPB	74	88.268	ENSOCUG00000022423	-	86	88.690	Oryctolagus_cuniculus
ENSIPUG00000024569	SNRPB	89	66.197	ENSOCUG00000026813	-	63	66.892	Oryctolagus_cuniculus
ENSIPUG00000024569	SNRPB	74	98.286	ENSORLG00000021862	snrpb	69	98.795	Oryzias_latipes
ENSIPUG00000024569	SNRPB	70	94.643	ENSOGAG00000016149	SNRPB	70	92.857	Otolemur_garnettii
ENSIPUG00000024569	SNRPB	76	94.536	ENSOARG00000006740	SNRPB	73	93.452	Ovis_aries
ENSIPUG00000024569	SNRPB	70	94.643	ENSPPAG00000036314	SNRPB	73	92.857	Pan_paniscus
ENSIPUG00000024569	SNRPB	70	94.643	ENSPPRG00000003233	-	73	92.857	Panthera_pardus
ENSIPUG00000024569	SNRPB	69	94.611	ENSPTIG00000007468	SNRPB	72	92.814	Panthera_tigris_altaica
ENSIPUG00000024569	SNRPB	70	94.643	ENSPTRG00000013176	SNRPB	73	92.857	Pan_troglodytes
ENSIPUG00000024569	SNRPB	70	94.643	ENSPANG00000020362	SNRPB	70	92.857	Papio_anubis
ENSIPUG00000024569	SNRPB	100	99.160	ENSPKIG00000002865	snrpb	100	99.160	Paramormyrops_kingsleyae
ENSIPUG00000024569	SNRPB	99	97.071	ENSPSIG00000014125	SNRPB	98	97.071	Pelodiscus_sinensis
ENSIPUG00000024569	SNRPB	96	95.175	ENSPMGG00000016349	snrpb	97	95.175	Periophthalmus_magnuspinnatus
ENSIPUG00000024569	SNRPB	70	94.643	ENSPEMG00000007948	Snrpb	73	92.857	Peromyscus_maniculatus_bairdii
ENSIPUG00000024569	SNRPB	69	94.012	ENSPCIG00000004694	SNRPB	69	92.216	Phascolarctos_cinereus
ENSIPUG00000024569	SNRPB	89	68.075	ENSPREG00000015515	snrpb	62	98.519	Poecilia_reticulata
ENSIPUG00000024569	SNRPB	70	94.643	ENSPPYG00000010841	SNRPB	73	92.857	Pongo_abelii
ENSIPUG00000024569	SNRPB	70	94.643	ENSPCOG00000013686	SNRPB	73	92.857	Propithecus_coquereli
ENSIPUG00000024569	SNRPB	72	91.329	ENSPVAG00000017013	SNRPB	60	91.908	Pteropus_vampyrus
ENSIPUG00000024569	SNRPB	99	97.479	ENSPNYG00000014788	snrpb	99	97.479	Pundamilia_nyererei
ENSIPUG00000024569	SNRPB	100	99.580	ENSPNAG00000016126	snrpb	100	99.580	Pygocentrus_nattereri
ENSIPUG00000024569	SNRPB	70	94.643	ENSRNOG00000006961	Snrpb	73	100.000	Rattus_norvegicus
ENSIPUG00000024569	SNRPB	70	94.643	ENSRBIG00000040505	SNRPB	73	92.857	Rhinopithecus_bieti
ENSIPUG00000024569	SNRPB	70	94.643	ENSRROG00000036094	SNRPB	73	92.857	Rhinopithecus_roxellana
ENSIPUG00000024569	SNRPB	70	94.643	ENSSBOG00000027310	SNRPB	73	92.857	Saimiri_boliviensis_boliviensis
ENSIPUG00000024569	SNRPB	70	95.238	ENSSHAG00000010394	SNRPB	70	93.452	Sarcophilus_harrisii
ENSIPUG00000024569	SNRPB	100	97.899	ENSSFOG00015002870	snrpb	100	97.899	Scleropages_formosus
ENSIPUG00000024569	SNRPB	99	97.881	ENSSMAG00000006766	snrpb	99	97.881	Scophthalmus_maximus
ENSIPUG00000024569	SNRPB	99	97.479	ENSSDUG00000018539	snrpb	99	97.479	Seriola_dumerili
ENSIPUG00000024569	SNRPB	99	97.479	ENSSLDG00000022391	snrpb	99	97.479	Seriola_lalandi_dorsalis
ENSIPUG00000024569	SNRPB	71	77.326	ENSSARG00000003084	SNRPB	74	77.907	Sorex_araneus
ENSIPUG00000024569	SNRPB	99	97.071	ENSSPUG00000015659	SNRPB	100	97.071	Sphenodon_punctatus
ENSIPUG00000024569	SNRPB	99	97.479	ENSSPAG00000021992	snrpb	99	97.479	Stegastes_partitus
ENSIPUG00000024569	SNRPB	95	74.236	ENSSSCG00000011966	-	77	69.945	Sus_scrofa
ENSIPUG00000024569	SNRPB	76	94.536	ENSSSCG00000040857	-	73	93.452	Sus_scrofa
ENSIPUG00000024569	SNRPB	74	80.791	ENSTGUG00000005684	SNRPB	59	97.143	Taeniopygia_guttata
ENSIPUG00000024569	SNRPB	95	97.797	ENSTRUG00000023094	snrpb	99	97.797	Takifugu_rubripes
ENSIPUG00000024569	SNRPB	99	97.881	ENSTNIG00000002991	snrpb	99	97.881	Tetraodon_nigroviridis
ENSIPUG00000024569	SNRPB	70	94.643	ENSUAMG00000005984	-	80	92.857	Ursus_americanus
ENSIPUG00000024569	SNRPB	70	94.048	ENSVVUG00000025654	-	70	92.857	Vulpes_vulpes
ENSIPUG00000024569	SNRPB	100	72.917	ENSVVUG00000010086	-	71	75.595	Vulpes_vulpes
ENSIPUG00000024569	SNRPB	63	98.000	ENSXETG00000027266	snrpb	63	98.000	Xenopus_tropicalis