EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000024669 (Gene tree)
Gene ID: 108263847
Gene Symbol: SAR1B
Alias: wu:fb14b12
Full Name: trypsin domain containing 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 10019 bases
Position: chr3:17203884-17213902
Accession: 108263847
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000036828	MMR_HSR1	PF01926.23	1.8e-05	1	1
ENSIPUP00000036826	MMR_HSR1	PF01926.23	5.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000038264	-	396	-	ENSIPUP00000036826	131 (aa)	-	-
ENSIPUT00000038266	-	2515	XM_017464717	ENSIPUP00000036828	198 (aa)	XP_017320206	W5UE94
ENSIPUT00000038263	-	4088	XM_017465038	ENSIPUP00000036825	526 (aa)	XP_017320527	W5UHU8

Gene Model

Click here to download ENSIPUG00000024669's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu04141	Protein processing in endoplasmic reticulum	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000024669's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000024669	SAR1B	71	34.409	ENSIPUG00000004215	arf5	52	34.409
ENSIPUG00000024669	SAR1B	68	34.831	ENSIPUG00000006168	arl5b	71	33.333
ENSIPUG00000024669	SAR1B	71	34.409	ENSIPUG00000004159	Arf5	52	34.409
ENSIPUG00000024669	SAR1B	94	30.890	ENSIPUG00000015451	arl3	92	31.395
ENSIPUG00000024669	SAR1B	79	30.769	ENSIPUG00000023232	arl5c	57	30.769
ENSIPUG00000024669	SAR1B	71	35.484	ENSIPUG00000011737	arf1	73	33.333
ENSIPUG00000024669	SAR1B	100	85.354	ENSIPUG00000020925	sar1b	100	85.354
ENSIPUG00000024669	SAR1B	79	34.615	ENSIPUG00000023431	arf3b	73	33.333
ENSIPUG00000024669	SAR1B	75	35.354	ENSIPUG00000020426	arl11	55	35.354
ENSIPUG00000024669	SAR1B	96	34.031	ENSIPUG00000019792	arl3l1	96	34.031
ENSIPUG00000024669	SAR1B	70	42.105	ENSIPUG00000020344	-	81	39.098
ENSIPUG00000024669	SAR1B	67	37.634	ENSIPUG00000019342	Arl4d	69	33.577
ENSIPUG00000024669	SAR1B	95	30.808	ENSIPUG00000008227	arl3	90	30.808
ENSIPUG00000024669	SAR1B	67	41.935	ENSIPUG00000002122	arl4cb	63	37.500
ENSIPUG00000024669	SAR1B	88	35.345	ENSIPUG00000013834	arl1	60	35.345
ENSIPUG00000024669	SAR1B	71	35.484	ENSIPUG00000000108	Arf2	73	33.083
ENSIPUG00000024669	SAR1B	92	30.601	ENSIPUG00000006913	-	66	30.601
ENSIPUG00000024669	SAR1B	67	37.234	ENSIPUG00000021618	arl4ab	63	34.711
ENSIPUG00000024669	SAR1B	100	85.859	ENSIPUG00000010046	sar1b	100	85.859
ENSIPUG00000024669	SAR1B	81	35.185	ENSIPUG00000024239	ARL6	75	35.385
ENSIPUG00000024669	SAR1B	71	35.484	ENSIPUG00000007016	arf4	52	35.484
ENSIPUG00000024669	SAR1B	74	32.450	ENSIPUG00000021761	arl8bb	81	32.450
ENSIPUG00000024669	SAR1B	68	31.461	ENSIPUG00000021388	arl5a	53	31.461
ENSIPUG00000024669	SAR1B	79	34.615	ENSIPUG00000007829	arf3a	74	33.083
ENSIPUG00000024669	SAR1B	67	43.011	ENSIPUG00000006298	-	69	36.364
ENSIPUG00000024669	SAR1B	88	32.174	ENSIPUG00000006311	arf1	79	31.944
ENSIPUG00000024669	SAR1B	72	38.384	ENSIPUG00000024159	arl4a	61	38.017
ENSIPUG00000024669	SAR1B	80	35.238	ENSIPUG00000003931	arl2	78	35.664
ENSIPUG00000024669	SAR1B	72	31.250	ENSIPUG00000000931	arl8ba	73	31.250

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000024669	SAR1B	89	85.345	ENSAMXG00000012438	tysnd1	98	84.034	Astyanax_mexicanus
ENSIPUG00000024669	SAR1B	100	86.869	ENSCAFG00000014026	TYSND1	100	86.869	Canis_familiaris