EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000024741 (Gene tree)
Gene ID: 108277000
Gene Symbol: setd1b
Alias: im:7156157|si:dkey-237o15.4
Full Name: SET domain containing 1B
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 21802 bases
Position: chr16:5501918-5523719
Accession: 108277000
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000036941	RRM_1	PF00076.22	3.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000038382	-	5187	XM_017489236	ENSIPUP00000036941	1728 (aa)	XP_017344725	A0A2D0SR05

Gene Model

Click here to download ENSIPUG00000024741's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu00310	Lysine degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000024741's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000024741	setd1b	54	61.840	ENSACIG00000016453	setd1ba	57	59.360	Amphilophus_citrinellus
ENSIPUG00000024741	setd1b	54	63.628	ENSAOCG00000012148	setd1ba	99	56.484	Amphiprion_ocellaris
ENSIPUG00000024741	setd1b	90	59.497	ENSATEG00000021563	setd1ba	96	60.084	Anabas_testudineus
ENSIPUG00000024741	setd1b	62	54.545	ENSAMXG00000015469	-	58	52.805	Astyanax_mexicanus
ENSIPUG00000024741	setd1b	68	68.954	ENSCPOG00000025456	SETD1A	52	66.163	Cavia_porcellus
ENSIPUG00000024741	setd1b	65	68.771	ENSCCAG00000025600	SETD1A	54	61.186	Cebus_capucinus
ENSIPUG00000024741	setd1b	64	78.507	ENSCLAG00000013200	SETD1B	75	62.447	Chinchilla_lanigera
ENSIPUG00000024741	setd1b	78	52.174	ENSCPBG00000026067	SETD1B	72	52.648	Chrysemys_picta_bellii
ENSIPUG00000024741	setd1b	66	82.278	ENSEASG00005012369	SETD1B	71	60.000	Equus_asinus_asinus
ENSIPUG00000024741	setd1b	60	68.525	ENSFCAG00000002588	SETD1A	50	68.285	Felis_catus
ENSIPUG00000024741	setd1b	50	84.194	ENSFALG00000009136	SETD1B	67	52.656	Ficedula_albicollis
ENSIPUG00000024741	setd1b	54	83.019	ENSGMOG00000009831	setd1ba	59	83.019	Gadus_morhua
ENSIPUG00000024741	setd1b	68	53.081	ENSGALG00000004324	SETD1B	68	53.427	Gallus_gallus
ENSIPUG00000024741	setd1b	89	60.987	ENSGAFG00000008712	setd1ba	89	59.873	Gambusia_affinis
ENSIPUG00000024741	setd1b	79	52.687	ENSGAGG00000025013	SETD1B	70	52.609	Gopherus_agassizii
ENSIPUG00000024741	setd1b	100	56.914	ENSLBEG00000020113	setd1ba	54	62.566	Labrus_bergylta
ENSIPUG00000024741	setd1b	70	51.397	ENSLACG00000018379	SETD1B	53	62.535	Latimeria_chalumnae
ENSIPUG00000024741	setd1b	65	53.997	ENSMGAG00000004421	SETD1B	67	53.576	Meleagris_gallopavo
ENSIPUG00000024741	setd1b	65	68.954	ENSMOCG00000012528	-	50	68.254	Microtus_ochrogaster
ENSIPUG00000024741	setd1b	76	78.852	ENSODEG00000010155	SETD1B	50	59.683	Octodon_degus
ENSIPUG00000024741	setd1b	55	60.271	ENSORLG00015004156	setd1ba	82	59.903	Oryzias_latipes_hsok
ENSIPUG00000024741	setd1b	53	60.402	ENSOMEG00000002270	setd1ba	54	59.899	Oryzias_melastigma
ENSIPUG00000024741	setd1b	64	55.392	ENSOGAG00000034809	SETD1B	51	59.365	Otolemur_garnettii
ENSIPUG00000024741	setd1b	88	62.041	ENSPMGG00000011527	setd1ba	53	57.962	Periophthalmus_magnuspinnatus
ENSIPUG00000024741	setd1b	61	68.954	ENSPEMG00000024243	-	97	47.348	Peromyscus_maniculatus_bairdii
ENSIPUG00000024741	setd1b	65	67.667	ENSSBOG00000020392	SETD1A	53	61.141	Saimiri_boliviensis_boliviensis
ENSIPUG00000024741	setd1b	51	76.282	ENSSPUG00000011847	SETD1B	52	62.712	Sphenodon_punctatus
ENSIPUG00000024741	setd1b	66	61.404	ENSSSCG00000009806	SETD1B	58	50.558	Sus_scrofa
ENSIPUG00000024741	setd1b	73	50.076	ENSTGUG00000006093	-	70	52.877	Taeniopygia_guttata
ENSIPUG00000024741	setd1b	65	82.581	ENSUAMG00000008729	SETD1B	64	62.782	Ursus_americanus
ENSIPUG00000024741	setd1b	96	51.835	ENSXETG00000003760	setd1b	72	51.216	Xenopus_tropicalis