EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000024851 (Gene tree)
Gene ID: 108271519
Gene Symbol: snrpc
Alias: U1C|chunp6909|zgc:109792
Full Name: small nuclear ribonucleoprotein polypeptide C
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 4760 bases
Position: chr11:22083581-22088340
Accession: 108271519
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000037124	zf-U1	PF06220.12	1.4e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000038571	-	602	XM_017479143	ENSIPUP00000037124	159 (aa)	XP_017334632	W5U944

Gene Model

Click here to download ENSIPUG00000024851's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000024851's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000024851	snrpc	100	85.535	ENSG00000124562	SNRPC	100	85.535	Homo_sapiens
ENSIPUG00000024851	snrpc	100	83.648	ENSAMEG00000000963	SNRPC	87	84.713	Ailuropoda_melanoleuca
ENSIPUG00000024851	snrpc	100	85.535	ENSACAG00000015721	SNRPC	87	86.624	Anolis_carolinensis
ENSIPUG00000024851	snrpc	99	78.481	ENSANAG00000020588	-	92	78.481	Aotus_nancymaae
ENSIPUG00000024851	snrpc	100	82.609	ENSANAG00000019157	-	100	82.609	Aotus_nancymaae
ENSIPUG00000024851	snrpc	100	62.893	ENSANAG00000021444	-	100	60.377	Aotus_nancymaae
ENSIPUG00000024851	snrpc	100	84.906	ENSANAG00000007843	-	100	84.906	Aotus_nancymaae
ENSIPUG00000024851	snrpc	100	78.616	ENSANAG00000019726	-	92	76.101	Aotus_nancymaae
ENSIPUG00000024851	snrpc	100	85.535	ENSANAG00000019696	-	100	85.535	Aotus_nancymaae
ENSIPUG00000024851	snrpc	100	72.956	ENSANAG00000021026	-	100	66.038	Aotus_nancymaae
ENSIPUG00000024851	snrpc	100	96.855	ENSAMXG00000032641	snrpc	87	96.855	Astyanax_mexicanus
ENSIPUG00000024851	snrpc	100	85.535	ENSBTAG00000024549	SNRPC	100	85.535	Bos_taurus
ENSIPUG00000024851	snrpc	76	49.587	WBGene00017238	F08B4.7	63	59.341	Caenorhabditis_elegans
ENSIPUG00000024851	snrpc	100	84.906	ENSCJAG00000043055	-	100	84.906	Callithrix_jacchus
ENSIPUG00000024851	snrpc	100	83.019	ENSCJAG00000041822	-	100	83.019	Callithrix_jacchus
ENSIPUG00000024851	snrpc	100	85.535	ENSCJAG00000015321	-	100	85.535	Callithrix_jacchus
ENSIPUG00000024851	snrpc	100	68.553	ENSCAFG00000025525	-	100	54.144	Canis_familiaris
ENSIPUG00000024851	snrpc	100	76.875	ENSCAFG00000028988	-	100	76.875	Canis_familiaris
ENSIPUG00000024851	snrpc	100	82.390	ENSCAFG00000031775	-	100	82.390	Canis_familiaris
ENSIPUG00000024851	snrpc	100	82.390	ENSCAFG00020017383	-	100	82.390	Canis_lupus_dingo
ENSIPUG00000024851	snrpc	100	63.483	ENSCAFG00020026577	-	53	86.170	Canis_lupus_dingo
ENSIPUG00000024851	snrpc	99	76.433	ENSCAFG00020009944	-	90	76.433	Canis_lupus_dingo
ENSIPUG00000024851	snrpc	100	81.761	ENSCAFG00020005758	-	99	82.166	Canis_lupus_dingo
ENSIPUG00000024851	snrpc	100	85.535	ENSCAFG00020005945	-	100	85.535	Canis_lupus_dingo
ENSIPUG00000024851	snrpc	100	84.906	ENSCHIG00000012087	-	100	84.906	Capra_hircus
ENSIPUG00000024851	snrpc	100	66.038	ENSCHIG00000005039	-	100	58.621	Capra_hircus
ENSIPUG00000024851	snrpc	100	85.535	ENSTSYG00000011216	-	100	85.535	Carlito_syrichta
ENSIPUG00000024851	snrpc	100	69.811	ENSTSYG00000025721	-	100	69.811	Carlito_syrichta
ENSIPUG00000024851	snrpc	99	80.380	ENSTSYG00000029745	-	78	81.410	Carlito_syrichta
ENSIPUG00000024851	snrpc	89	83.803	ENSCAPG00000005161	SNRPC	100	83.803	Cavia_aperea
ENSIPUG00000024851	snrpc	100	85.535	ENSCPOG00000008563	SNRPC	100	85.535	Cavia_porcellus
ENSIPUG00000024851	snrpc	98	65.385	ENSCCAG00000022209	-	95	65.385	Cebus_capucinus
ENSIPUG00000024851	snrpc	100	80.503	ENSCCAG00000036059	-	89	80.503	Cebus_capucinus
ENSIPUG00000024851	snrpc	99	69.427	ENSCCAG00000026624	-	66	69.427	Cebus_capucinus
ENSIPUG00000024851	snrpc	100	61.006	ENSCCAG00000028293	-	100	59.748	Cebus_capucinus
ENSIPUG00000024851	snrpc	98	77.564	ENSCCAG00000022751	-	95	77.564	Cebus_capucinus
ENSIPUG00000024851	snrpc	100	85.535	ENSCATG00000035787	SNRPC	100	85.535	Cercocebus_atys
ENSIPUG00000024851	snrpc	100	85.535	ENSCLAG00000016920	SNRPC	100	85.535	Chinchilla_lanigera
ENSIPUG00000024851	snrpc	99	69.427	ENSCLAG00000010242	-	96	69.427	Chinchilla_lanigera
ENSIPUG00000024851	snrpc	100	63.483	ENSCSAG00000009821	SNRPC	53	86.170	Chlorocebus_sabaeus
ENSIPUG00000024851	snrpc	100	74.214	ENSCHOG00000011439	SNRPC	88	75.159	Choloepus_hoffmanni
ENSIPUG00000024851	snrpc	100	84.906	ENSCPBG00000027142	SNRPC	100	84.906	Chrysemys_picta_bellii
ENSIPUG00000024851	snrpc	64	59.406	ENSCING00000021229	ci-zf(matrin)-4	67	60.396	Ciona_intestinalis
ENSIPUG00000024851	snrpc	100	85.535	ENSCANG00000028035	SNRPC	100	85.535	Colobus_angolensis_palliatus
ENSIPUG00000024851	snrpc	100	84.906	ENSCGRG00001009011	-	100	84.906	Cricetulus_griseus_chok1gshd
ENSIPUG00000024851	snrpc	100	72.956	ENSCGRG00001021483	-	100	72.956	Cricetulus_griseus_chok1gshd
ENSIPUG00000024851	snrpc	100	83.019	ENSCGRG00000005005	Snrpc	99	84.076	Cricetulus_griseus_crigri
ENSIPUG00000024851	snrpc	100	93.711	ENSDARG00000009871	snrpc	100	93.711	Danio_rerio
ENSIPUG00000024851	snrpc	100	84.906	ENSDNOG00000034699	-	99	84.906	Dasypus_novemcinctus
ENSIPUG00000024851	snrpc	95	65.409	ENSDORG00000029823	-	100	64.596	Dipodomys_ordii
ENSIPUG00000024851	snrpc	98	78.205	ENSETEG00000011265	-	100	78.205	Echinops_telfairi
ENSIPUG00000024851	snrpc	100	55.901	ENSEBUG00000011445	snrpc	53	60.215	Eptatretus_burgeri
ENSIPUG00000024851	snrpc	100	85.535	ENSEASG00005021007	SNRPC	100	85.535	Equus_asinus_asinus
ENSIPUG00000024851	snrpc	100	85.535	ENSECAG00000026848	SNRPC	100	85.535	Equus_caballus
ENSIPUG00000024851	snrpc	99	72.785	ENSEEUG00000014633	SNRPC	90	72.785	Erinaceus_europaeus
ENSIPUG00000024851	snrpc	100	83.436	ENSELUG00000020489	snrpc	100	75.000	Esox_lucius
ENSIPUG00000024851	snrpc	100	82.390	ENSELUG00000000815	SNRPC	100	82.390	Esox_lucius
ENSIPUG00000024851	snrpc	100	85.535	ENSFCAG00000044077	-	100	85.535	Felis_catus
ENSIPUG00000024851	snrpc	100	85.535	ENSFALG00000003756	SNRPC	100	85.535	Ficedula_albicollis
ENSIPUG00000024851	snrpc	100	85.535	ENSFDAG00000018111	SNRPC	100	85.535	Fukomys_damarensis
ENSIPUG00000024851	snrpc	75	88.235	ENSFHEG00000016667	snrpc	97	88.235	Fundulus_heteroclitus
ENSIPUG00000024851	snrpc	100	84.375	ENSGALG00000002773	SNRPC	100	84.375	Gallus_gallus
ENSIPUG00000024851	snrpc	100	84.906	ENSGAGG00000003063	SNRPC	100	84.906	Gopherus_agassizii
ENSIPUG00000024851	snrpc	100	85.535	ENSGGOG00000012499	SNRPC	100	85.535	Gorilla_gorilla
ENSIPUG00000024851	snrpc	81	65.116	ENSHGLG00000005871	-	100	64.151	Heterocephalus_glaber_female
ENSIPUG00000024851	snrpc	100	76.101	ENSHGLG00000017741	-	100	78.616	Heterocephalus_glaber_female
ENSIPUG00000024851	snrpc	100	85.535	ENSHGLG00000013981	SNRPC	100	85.535	Heterocephalus_glaber_female
ENSIPUG00000024851	snrpc	100	81.761	ENSHGLG00100017764	-	100	81.761	Heterocephalus_glaber_male
ENSIPUG00000024851	snrpc	100	85.535	ENSHGLG00100009478	SNRPC	100	85.535	Heterocephalus_glaber_male
ENSIPUG00000024851	snrpc	100	76.101	ENSHGLG00100010786	-	100	78.616	Heterocephalus_glaber_male
ENSIPUG00000024851	snrpc	100	85.535	ENSSTOG00000013786	SNRPC	100	85.535	Ictidomys_tridecemlineatus
ENSIPUG00000024851	snrpc	100	84.906	ENSJJAG00000021741	Snrpc	100	84.906	Jaculus_jaculus
ENSIPUG00000024851	snrpc	100	85.535	ENSLAFG00000013534	SNRPC	100	85.535	Loxodonta_africana
ENSIPUG00000024851	snrpc	100	85.535	ENSMFAG00000031764	-	100	85.535	Macaca_fascicularis
ENSIPUG00000024851	snrpc	100	84.906	ENSMFAG00000030525	-	100	84.906	Macaca_fascicularis
ENSIPUG00000024851	snrpc	100	84.277	ENSMMUG00000039415	-	100	84.277	Macaca_mulatta
ENSIPUG00000024851	snrpc	100	75.472	ENSMMUG00000045425	-	100	75.472	Macaca_mulatta
ENSIPUG00000024851	snrpc	100	84.277	ENSMMUG00000000869	-	95	85.256	Macaca_mulatta
ENSIPUG00000024851	snrpc	100	85.535	ENSMNEG00000032731	SNRPC	100	85.535	Macaca_nemestrina
ENSIPUG00000024851	snrpc	100	85.535	ENSMLEG00000033916	-	100	85.535	Mandrillus_leucophaeus
ENSIPUG00000024851	snrpc	97	78.065	ENSMLEG00000040224	-	89	78.065	Mandrillus_leucophaeus
ENSIPUG00000024851	snrpc	97	59.740	ENSMLEG00000039724	-	81	57.792	Mandrillus_leucophaeus
ENSIPUG00000024851	snrpc	100	81.761	ENSMGAG00000006054	SNRPC	100	84.277	Meleagris_gallopavo
ENSIPUG00000024851	snrpc	100	84.906	ENSMICG00000032183	-	100	84.906	Microcebus_murinus
ENSIPUG00000024851	snrpc	100	85.535	ENSMICG00000007339	-	100	85.535	Microcebus_murinus
ENSIPUG00000024851	snrpc	98	71.154	ENSMICG00000036552	-	87	71.795	Microcebus_murinus
ENSIPUG00000024851	snrpc	100	76.101	ENSMICG00000009130	-	100	76.101	Microcebus_murinus
ENSIPUG00000024851	snrpc	100	84.906	ENSMOCG00000017609	Snrpc	100	84.906	Microtus_ochrogaster
ENSIPUG00000024851	snrpc	100	86.164	ENSMODG00000013904	-	100	86.164	Monodelphis_domestica
ENSIPUG00000024851	snrpc	100	69.375	ENSMALG00000001197	snrpc	100	81.250	Monopterus_albus
ENSIPUG00000024851	snrpc	100	84.906	MGP_CAROLIEiJ_G0021308	Snrpc	100	84.906	Mus_caroli
ENSIPUG00000024851	snrpc	100	84.906	ENSMUSG00000024217	Snrpc	100	84.906	Mus_musculus
ENSIPUG00000024851	snrpc	100	83.648	ENSMPUG00000003210	SNRPC	99	84.713	Mustela_putorius_furo
ENSIPUG00000024851	snrpc	100	83.648	ENSMLUG00000002488	SNRPC	99	84.713	Myotis_lucifugus
ENSIPUG00000024851	snrpc	100	84.906	ENSNGAG00000019686	Snrpc	100	84.906	Nannospalax_galili
ENSIPUG00000024851	snrpc	100	85.535	ENSNLEG00000034810	SNRPC	100	85.535	Nomascus_leucogenys
ENSIPUG00000024851	snrpc	89	83.803	ENSMEUG00000009300	SNRPC	100	83.803	Notamacropus_eugenii
ENSIPUG00000024851	snrpc	100	85.535	ENSODEG00000020370	-	100	85.535	Octodon_degus
ENSIPUG00000024851	snrpc	100	85.535	ENSODEG00000018985	-	100	85.535	Octodon_degus
ENSIPUG00000024851	snrpc	100	84.906	ENSODEG00000020201	-	100	84.906	Octodon_degus
ENSIPUG00000024851	snrpc	77	80.488	ENSODEG00000006008	-	68	80.851	Octodon_degus
ENSIPUG00000024851	snrpc	100	85.535	ENSODEG00000017080	-	100	85.535	Octodon_degus
ENSIPUG00000024851	snrpc	100	84.277	ENSODEG00000019633	-	100	84.277	Octodon_degus
ENSIPUG00000024851	snrpc	89	81.507	ENSOANG00000003405	SNRPC	100	80.405	Ornithorhynchus_anatinus
ENSIPUG00000024851	snrpc	60	85.263	ENSOCUG00000023292	-	100	84.277	Oryctolagus_cuniculus
ENSIPUG00000024851	snrpc	100	85.535	ENSOCUG00000026668	-	100	85.535	Oryctolagus_cuniculus
ENSIPUG00000024851	snrpc	100	84.277	ENSOCUG00000026430	-	99	84.277	Oryctolagus_cuniculus
ENSIPUG00000024851	snrpc	65	54.808	ENSORLG00000007308	snrpc	97	82.468	Oryzias_latipes
ENSIPUG00000024851	snrpc	75	88.235	ENSOMEG00000012014	snrpc	86	85.000	Oryzias_melastigma
ENSIPUG00000024851	snrpc	97	85.161	ENSOGAG00000008755	-	88	84.713	Otolemur_garnettii
ENSIPUG00000024851	snrpc	100	84.277	ENSOGAG00000026269	-	100	84.277	Otolemur_garnettii
ENSIPUG00000024851	snrpc	97	62.987	ENSOGAG00000028405	-	99	68.182	Otolemur_garnettii
ENSIPUG00000024851	snrpc	100	85.535	ENSOARG00000010823	SNRPC	100	85.535	Ovis_aries
ENSIPUG00000024851	snrpc	100	85.535	ENSPPAG00000043871	SNRPC	100	85.535	Pan_paniscus
ENSIPUG00000024851	snrpc	96	49.359	ENSPPRG00000016017	-	86	42.941	Panthera_pardus
ENSIPUG00000024851	snrpc	100	59.748	ENSPPRG00000010967	-	89	55.280	Panthera_pardus
ENSIPUG00000024851	snrpc	100	85.535	ENSPPRG00000008647	-	100	85.535	Panthera_pardus
ENSIPUG00000024851	snrpc	100	51.572	ENSPTIG00000011880	-	88	46.541	Panthera_tigris_altaica
ENSIPUG00000024851	snrpc	96	53.289	ENSPTIG00000013329	-	82	54.605	Panthera_tigris_altaica
ENSIPUG00000024851	snrpc	100	85.535	ENSPTIG00000021867	-	100	85.535	Panthera_tigris_altaica
ENSIPUG00000024851	snrpc	100	85.535	ENSPTRG00000018070	SNRPC	100	85.535	Pan_troglodytes
ENSIPUG00000024851	snrpc	100	74.214	ENSPANG00000018228	-	94	74.214	Papio_anubis
ENSIPUG00000024851	snrpc	100	85.535	ENSPANG00000022802	-	100	85.535	Papio_anubis
ENSIPUG00000024851	snrpc	59	90.426	ENSPKIG00000003136	snrpc	100	85.161	Paramormyrops_kingsleyae
ENSIPUG00000024851	snrpc	100	85.535	ENSPKIG00000001671	SNRPC	100	85.535	Paramormyrops_kingsleyae
ENSIPUG00000024851	snrpc	99	84.076	ENSPSIG00000004876	SNRPC	77	84.076	Pelodiscus_sinensis
ENSIPUG00000024851	snrpc	99	70.701	ENSPMGG00000022162	snrpc	100	78.981	Periophthalmus_magnuspinnatus
ENSIPUG00000024851	snrpc	100	84.906	ENSPEMG00000010773	Snrpc	100	84.906	Peromyscus_maniculatus_bairdii
ENSIPUG00000024851	snrpc	100	75.472	ENSPEMG00000002763	-	100	74.214	Peromyscus_maniculatus_bairdii
ENSIPUG00000024851	snrpc	99	69.427	ENSPMAG00000000602	snrpc	98	64.968	Petromyzon_marinus
ENSIPUG00000024851	snrpc	99	67.296	ENSPREG00000013017	snrpc	79	54.167	Poecilia_reticulata
ENSIPUG00000024851	snrpc	100	83.648	ENSPCAG00000016885	SNRPC	90	84.713	Procavia_capensis
ENSIPUG00000024851	snrpc	100	85.535	ENSPCOG00000004904	SNRPC	100	85.535	Propithecus_coquereli
ENSIPUG00000024851	snrpc	100	83.019	ENSPVAG00000015597	SNRPC	87	84.076	Pteropus_vampyrus
ENSIPUG00000024851	snrpc	84	67.669	ENSPNYG00000004900	snrpc	100	55.414	Pundamilia_nyererei
ENSIPUG00000024851	snrpc	100	96.226	ENSPNAG00000012799	snrpc	100	96.226	Pygocentrus_nattereri
ENSIPUG00000024851	snrpc	100	84.906	ENSRNOG00000000493	Snrpc	100	84.906	Rattus_norvegicus
ENSIPUG00000024851	snrpc	100	75.472	ENSRBIG00000036353	-	83	75.472	Rhinopithecus_bieti
ENSIPUG00000024851	snrpc	100	85.535	ENSRBIG00000014819	-	100	85.535	Rhinopithecus_bieti
ENSIPUG00000024851	snrpc	100	84.906	ENSRBIG00000022998	-	100	84.906	Rhinopithecus_bieti
ENSIPUG00000024851	snrpc	100	85.535	ENSRBIG00000037567	-	100	85.535	Rhinopithecus_bieti
ENSIPUG00000024851	snrpc	100	85.535	ENSRROG00000041300	SNRPC	100	85.535	Rhinopithecus_roxellana
ENSIPUG00000024851	snrpc	95	70.199	ENSSBOG00000032361	-	94	70.199	Saimiri_boliviensis_boliviensis
ENSIPUG00000024851	snrpc	100	85.535	ENSSBOG00000031528	-	100	85.535	Saimiri_boliviensis_boliviensis
ENSIPUG00000024851	snrpc	98	71.795	ENSSBOG00000023189	-	91	71.795	Saimiri_boliviensis_boliviensis
ENSIPUG00000024851	snrpc	98	69.872	ENSSBOG00000032882	-	93	69.231	Saimiri_boliviensis_boliviensis
ENSIPUG00000024851	snrpc	99	84.713	ENSSHAG00000000945	-	87	84.713	Sarcophilus_harrisii
ENSIPUG00000024851	snrpc	58	93.478	ENSSFOG00015022422	snrpc	99	91.613	Scleropages_formosus
ENSIPUG00000024851	snrpc	100	83.648	ENSSFOG00015019150	snrpc	100	83.648	Scleropages_formosus
ENSIPUG00000024851	snrpc	100	65.409	ENSSARG00000008970	SNRPC	89	65.409	Sorex_araneus
ENSIPUG00000024851	snrpc	100	86.792	ENSSPUG00000002502	SNRPC	100	86.792	Sphenodon_punctatus
ENSIPUG00000024851	snrpc	100	85.535	ENSSSCG00000001531	SNRPC	100	85.535	Sus_scrofa
ENSIPUG00000024851	snrpc	100	84.277	ENSTGUG00000001773	SNRPC	99	84.810	Taeniopygia_guttata
ENSIPUG00000024851	snrpc	100	70.440	ENSTRUG00000021651	snrpc	100	76.250	Takifugu_rubripes
ENSIPUG00000024851	snrpc	100	73.913	ENSTNIG00000018307	snrpc	100	79.630	Tetraodon_nigroviridis
ENSIPUG00000024851	snrpc	98	78.205	ENSTBEG00000013022	-	100	78.205	Tupaia_belangeri
ENSIPUG00000024851	snrpc	89	65.493	ENSTBEG00000016759	-	79	65.493	Tupaia_belangeri
ENSIPUG00000024851	snrpc	60	80.000	ENSTBEG00000015356	-	100	66.026	Tupaia_belangeri
ENSIPUG00000024851	snrpc	100	83.648	ENSTTRG00000007827	SNRPC	86	84.713	Tursiops_truncatus
ENSIPUG00000024851	snrpc	100	62.921	ENSUMAG00000010869	SNRPC	53	86.170	Ursus_maritimus
ENSIPUG00000024851	snrpc	89	62.676	ENSVPAG00000003106	SNRPC	79	62.676	Vicugna_pacos
ENSIPUG00000024851	snrpc	97	80.519	ENSVVUG00000010467	-	87	80.769	Vulpes_vulpes
ENSIPUG00000024851	snrpc	100	84.277	ENSVVUG00000021947	-	100	84.277	Vulpes_vulpes
ENSIPUG00000024851	snrpc	100	83.648	ENSXETG00000024721	snrpc	100	85.093	Xenopus_tropicalis