EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSJJAG00000000053 (Gene tree)
Gene ID
101610697
Gene Symbol
Upf3b
Alias
5730594O13Rik|RENT3B|UPF3X
Full Name
UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type
protein_coding
Species
Jaculus_jaculus
Status
putative
Strand
Plus strand
Length
20559 bases
Position
chrJH725638.1:156880-177438
Accession
101610697
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSJJAP00000000030Smg4_UPF3PF03467.154.3e-5311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSJJAT00000000055-1842XM_004672598ENSJJAP00000000030472 (aa)XP_004672655UPI0003333D4C
Gene Model
Click here to download ENSJJAG00000000053's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSJJAG00000000053's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSJJAG00000000053Upf3b10088.771ENSG00000125351UPF3B9693.750Homo_sapiens
ENSJJAG00000000053Upf3b8450.971ENSG00000169062UPF3A5363.158Homo_sapiens
ENSJJAG00000000053Upf3b10054.280ENSAPOG00000012775upf3b10054.280Acanthochromis_polyacanthus
ENSJJAG00000000053Upf3b10089.831ENSAMEG00000000163UPF3B10089.619Ailuropoda_melanoleuca
ENSJJAG00000000053Upf3b8948.506ENSAMEG00000004259UPF3A9043.529Ailuropoda_melanoleuca
ENSJJAG00000000053Upf3b9451.868ENSACIG00000013582upf3b9450.877Amphilophus_citrinellus
ENSJJAG00000000053Upf3b10052.818ENSAOCG00000000706upf3b10052.818Amphiprion_ocellaris
ENSJJAG00000000053Upf3b10054.071ENSAPEG00000005545upf3b10054.071Amphiprion_percula
ENSJJAG00000000053Upf3b9457.174ENSATEG00000018742upf3b9456.858Anabas_testudineus
ENSJJAG00000000053Upf3b8948.140ENSACAG00000001540UPF3A9950.704Anolis_carolinensis
ENSJJAG00000000053Upf3b9167.277ENSACAG00000003625UPF3B9964.644Anolis_carolinensis
ENSJJAG00000000053Upf3b10085.169ENSANAG00000025598-10081.992Aotus_nancymaae
ENSJJAG00000000053Upf3b5768.030ENSANAG00000033169-9566.423Aotus_nancymaae
ENSJJAG00000000053Upf3b10089.195ENSANAG00000021894-10094.424Aotus_nancymaae
ENSJJAG00000000053Upf3b9456.637ENSACLG00000001649upf3b6861.145Astatotilapia_calliptera
ENSJJAG00000000053Upf3b5760.498ENSAMXG00000000199upf3b8858.511Astyanax_mexicanus
ENSJJAG00000000053Upf3b6994.796ENSBTAG00000035615UPF3B10094.796Bos_taurus
ENSJJAG00000000053Upf3b10088.136ENSCJAG00000004975UPF3B10093.309Callithrix_jacchus
ENSJJAG00000000053Upf3b8449.757ENSCJAG00000019102UPF3A5355.556Callithrix_jacchus
ENSJJAG00000000053Upf3b10086.186ENSCAFG00000018426UPF3B10086.551Canis_familiaris
ENSJJAG00000000053Upf3b8846.136ENSCAFG00000006504UPF3A6350.820Canis_familiaris
ENSJJAG00000000053Upf3b10086.441ENSCAFG00020004074UPF3B10085.805Canis_lupus_dingo
ENSJJAG00000000053Upf3b8846.136ENSCAFG00020014268UPF3A6150.820Canis_lupus_dingo
ENSJJAG00000000053Upf3b9886.498ENSCHIG00000018011-10094.424Capra_hircus
ENSJJAG00000000053Upf3b10086.804ENSCHIG00000000247-10086.598Capra_hircus
ENSJJAG00000000053Upf3b9061.593ENSCHIG00000011454-9857.616Capra_hircus
ENSJJAG00000000053Upf3b10088.771ENSTSYG00000014690UPF3B10088.136Carlito_syrichta
ENSJJAG00000000053Upf3b7171.831ENSCCAG00000021964-10071.831Cebus_capucinus
ENSJJAG00000000053Upf3b9956.103ENSCCAG00000029813-8766.296Cebus_capucinus
ENSJJAG00000000053Upf3b9048.402ENSCCAG00000018406UPF3A5354.789Cebus_capucinus
ENSJJAG00000000053Upf3b10088.559ENSCATG00000017506UPF3B10094.052Cercocebus_atys
ENSJJAG00000000053Upf3b8949.423ENSCATG00000029733UPF3A5661.455Cercocebus_atys
ENSJJAG00000000053Upf3b10088.347ENSCLAG00000003260UPF3B10088.136Chinchilla_lanigera
ENSJJAG00000000053Upf3b8949.312ENSCSAG00000017388UPF3A5660.870Chlorocebus_sabaeus
ENSJJAG00000000053Upf3b10086.392ENSCSAG00000018348UPF3B10086.186Chlorocebus_sabaeus
ENSJJAG00000000053Upf3b9962.422ENSCPBG00000020685UPF3B9962.422Chrysemys_picta_bellii
ENSJJAG00000000053Upf3b7194.052ENSCANG00000029220UPF3B10094.052Colobus_angolensis_palliatus
ENSJJAG00000000053Upf3b10089.831ENSCGRG00001006858-10089.831Cricetulus_griseus_chok1gshd
ENSJJAG00000000053Upf3b7487.179ENSCGRG00001013643-8984.756Cricetulus_griseus_chok1gshd
ENSJJAG00000000053Upf3b8991.429ENSCGRG00000007627Upf3b10091.429Cricetulus_griseus_crigri
ENSJJAG00000000053Upf3b9354.120ENSCSEG00000002046upf3b6660.180Cynoglossus_semilaevis
ENSJJAG00000000053Upf3b9751.702ENSCVAG00000005030upf3b6461.688Cyprinodon_variegatus
ENSJJAG00000000053Upf3b9355.629ENSDARG00000000489upf3b9354.626Danio_rerio
ENSJJAG00000000053Upf3b10085.361ENSDNOG00000008665UPF3B10085.155Dasypus_novemcinctus
ENSJJAG00000000053Upf3b7652.446ENSDNOG00000034391UPF3A6855.205Dasypus_novemcinctus
ENSJJAG00000000053Upf3b10085.169ENSDORG00000006077Upf3b10083.898Dipodomys_ordii
ENSJJAG00000000053Upf3b8343.980ENSETEG00000010110UPF3A5244.094Echinops_telfairi
ENSJJAG00000000053Upf3b8950.591ENSEASG00005021884UPF3A8743.619Equus_asinus_asinus
ENSJJAG00000000053Upf3b9987.473ENSEASG00005012919UPF3B10087.261Equus_asinus_asinus
ENSJJAG00000000053Upf3b8950.591ENSECAG00000017141UPF3A8742.890Equus_caballus
ENSJJAG00000000053Upf3b9987.473ENSECAG00000016947UPF3B10087.261Equus_caballus
ENSJJAG00000000053Upf3b10049.507ENSELUG00000020389upf3b6560.241Esox_lucius
ENSJJAG00000000053Upf3b8947.955ENSFCAG00000014602UPF3A5554.887Felis_catus
ENSJJAG00000000053Upf3b10087.712ENSFCAG00000004388UPF3B10087.712Felis_catus
ENSJJAG00000000053Upf3b9961.840ENSFALG00000001569UPF3B9961.584Ficedula_albicollis
ENSJJAG00000000053Upf3b10089.407ENSFDAG00000018869UPF3B10089.195Fukomys_damarensis
ENSJJAG00000000053Upf3b9352.889ENSFHEG00000017895upf3b9652.802Fundulus_heteroclitus
ENSJJAG00000000053Upf3b9355.211ENSGMOG00000001621upf3b9355.531Gadus_morhua
ENSJJAG00000000053Upf3b9165.011ENSGALG00000008618UPF3B9966.528Gallus_gallus
ENSJJAG00000000053Upf3b8855.048ENSGAFG00000000829upf3b9455.629Gambusia_affinis
ENSJJAG00000000053Upf3b9254.260ENSGACG00000017435upf3b7166.029Gasterosteus_aculeatus
ENSJJAG00000000053Upf3b9965.136ENSGAGG00000001219UPF3B9965.136Gopherus_agassizii
ENSJJAG00000000053Upf3b8343.704ENSGGOG00000041219-8637.250Gorilla_gorilla
ENSJJAG00000000053Upf3b10088.771ENSGGOG00000023995UPF3B10094.052Gorilla_gorilla
ENSJJAG00000000053Upf3b8451.095ENSGGOG00000015428UPF3A5362.500Gorilla_gorilla
ENSJJAG00000000053Upf3b9456.637ENSHBUG00000017393upf3b6861.145Haplochromis_burtoni
ENSJJAG00000000053Upf3b10088.559ENSHGLG00000019582-10088.347Heterocephalus_glaber_female
ENSJJAG00000000053Upf3b8680.198ENSHGLG00000011189-9680.693Heterocephalus_glaber_female
ENSJJAG00000000053Upf3b10086.864ENSHGLG00100002042-10086.441Heterocephalus_glaber_male
ENSJJAG00000000053Upf3b8680.446ENSHGLG00100001889-9680.446Heterocephalus_glaber_male
ENSJJAG00000000053Upf3b10052.282ENSHCOG00000017004upf3b9352.889Hippocampus_comes
ENSJJAG00000000053Upf3b9157.658ENSIPUG00000019249upf3b10054.021Ictalurus_punctatus
ENSJJAG00000000053Upf3b10087.924ENSSTOG00000001101UPF3B10087.712Ictidomys_tridecemlineatus
ENSJJAG00000000053Upf3b9653.579ENSKMAG00000020300upf3b9751.620Kryptolebias_marmoratus
ENSJJAG00000000053Upf3b6064.014ENSLBEG00000028689upf3b5963.763Labrus_bergylta
ENSJJAG00000000053Upf3b9055.430ENSLACG00000008691UPF3B10057.700Latimeria_chalumnae
ENSJJAG00000000053Upf3b5174.380ENSLOCG00000015238upf3b9355.841Lepisosteus_oculatus
ENSJJAG00000000053Upf3b9053.636ENSLOCG00000002665upf3a9151.591Lepisosteus_oculatus
ENSJJAG00000000053Upf3b10087.500ENSLAFG00000001267UPF3B10087.288Loxodonta_africana
ENSJJAG00000000053Upf3b8544.665ENSLAFG00000023358UPF3A9943.230Loxodonta_africana
ENSJJAG00000000053Upf3b10088.347ENSMFAG00000045414UPF3B10094.052Macaca_fascicularis
ENSJJAG00000000053Upf3b10088.347ENSMMUG00000020222UPF3B10094.052Macaca_mulatta
ENSJJAG00000000053Upf3b8847.523ENSMMUG00000007449UPF3A6456.997Macaca_mulatta
ENSJJAG00000000053Upf3b8849.061ENSMNEG00000036402UPF3A5063.821Macaca_nemestrina
ENSJJAG00000000053Upf3b10088.347ENSMNEG00000039794UPF3B10094.052Macaca_nemestrina
ENSJJAG00000000053Upf3b10088.559ENSMLEG00000010999UPF3B10094.052Mandrillus_leucophaeus
ENSJJAG00000000053Upf3b8848.086ENSMLEG00000014726UPF3A5763.821Mandrillus_leucophaeus
ENSJJAG00000000053Upf3b9456.416ENSMZEG00005007871upf3b6861.145Maylandia_zebra
ENSJJAG00000000053Upf3b8164.232ENSMGAG00000007728UPF3B9967.179Meleagris_gallopavo
ENSJJAG00000000053Upf3b8551.683ENSMGAG00000014837UPF3A9651.980Meleagris_gallopavo
ENSJJAG00000000053Upf3b10089.831ENSMAUG00000008705Upf3b10089.831Mesocricetus_auratus
ENSJJAG00000000053Upf3b7192.963ENSMICG00000001743UPF3B10092.963Microcebus_murinus
ENSJJAG00000000053Upf3b10089.485ENSMOCG00000017893Upf3b10089.072Microtus_ochrogaster
ENSJJAG00000000053Upf3b8554.501ENSMMOG00000004183upf3b9454.343Mola_mola
ENSJJAG00000000053Upf3b8854.312ENSMODG00000003159UPF3A9652.914Monodelphis_domestica
ENSJJAG00000000053Upf3b8972.235ENSMODG00000010232UPF3B9972.235Monodelphis_domestica
ENSJJAG00000000053Upf3b7058.507ENSMALG00000008042upf3b6861.027Monopterus_albus
ENSJJAG00000000053Upf3b10090.678MGP_CAROLIEiJ_G0032999Upf3b10090.678Mus_caroli
ENSJJAG00000000053Upf3b10091.102ENSMUSG00000036572Upf3b10091.102Mus_musculus
ENSJJAG00000000053Upf3b10089.407MGP_PahariEiJ_G0031543Upf3b10089.407Mus_pahari
ENSJJAG00000000053Upf3b10091.102MGP_SPRETEiJ_G0034152Upf3b10091.102Mus_spretus
ENSJJAG00000000053Upf3b8845.755ENSMPUG00000009139UPF3A5453.731Mustela_putorius_furo
ENSJJAG00000000053Upf3b9889.154ENSMPUG00000001531UPF3B10088.503Mustela_putorius_furo
ENSJJAG00000000053Upf3b10090.466ENSMLUG00000010821UPF3B10088.983Myotis_lucifugus
ENSJJAG00000000053Upf3b8346.192ENSMLUG00000015905UPF3A5556.118Myotis_lucifugus
ENSJJAG00000000053Upf3b10090.678ENSNGAG00000008231Upf3b10090.678Nannospalax_galili
ENSJJAG00000000053Upf3b9788.671ENSNLEG00000014897UPF3B10088.136Nomascus_leucogenys
ENSJJAG00000000053Upf3b8450.728ENSNLEG00000007563UPF3A5559.643Nomascus_leucogenys
ENSJJAG00000000053Upf3b6582.581ENSMEUG00000015615UPF3B8182.692Notamacropus_eugenii
ENSJJAG00000000053Upf3b10081.992ENSODEG00000002186-10081.568Octodon_degus
ENSJJAG00000000053Upf3b10054.564ENSONIG00000002536upf3b9455.824Oreochromis_niloticus
ENSJJAG00000000053Upf3b7946.073ENSOANG00000006985-6255.469Ornithorhynchus_anatinus
ENSJJAG00000000053Upf3b10087.835ENSOCUG00000010213UPF3B10087.629Oryctolagus_cuniculus
ENSJJAG00000000053Upf3b9054.378ENSORLG00000001026upf3b9454.305Oryzias_latipes
ENSJJAG00000000053Upf3b9054.128ENSORLG00020003758upf3b9454.066Oryzias_latipes_hni
ENSJJAG00000000053Upf3b8355.831ENSORLG00015012954upf3b9453.422Oryzias_latipes_hsok
ENSJJAG00000000053Upf3b8356.328ENSOMEG00000014736upf3b9553.846Oryzias_melastigma
ENSJJAG00000000053Upf3b9777.056ENSOGAG00000033003-10077.273Otolemur_garnettii
ENSJJAG00000000053Upf3b10088.983ENSOGAG00000004643-10088.771Otolemur_garnettii
ENSJJAG00000000053Upf3b9067.529ENSOARG00000007869-9963.529Ovis_aries
ENSJJAG00000000053Upf3b10086.270ENSOARG00000016051-10086.066Ovis_aries
ENSJJAG00000000053Upf3b10088.771ENSPPAG00000040390UPF3B10094.052Pan_paniscus
ENSJJAG00000000053Upf3b8449.505ENSPPAG00000042267UPF3A5262.595Pan_paniscus
ENSJJAG00000000053Upf3b9347.084ENSPPRG00000025062UPF3A5554.887Panthera_pardus
ENSJJAG00000000053Upf3b10088.983ENSPPRG00000023536UPF3B10089.195Panthera_pardus
ENSJJAG00000000053Upf3b10084.330ENSPTIG00000015264UPF3B10095.167Panthera_tigris_altaica
ENSJJAG00000000053Upf3b8338.168ENSPTRG00000041187-5047.521Pan_troglodytes
ENSJJAG00000000053Upf3b8339.798ENSPTRG00000041835-6141.611Pan_troglodytes
ENSJJAG00000000053Upf3b10088.771ENSPTRG00000022228UPF3B10094.052Pan_troglodytes
ENSJJAG00000000053Upf3b8450.971ENSPTRG00000006073UPF3A5262.595Pan_troglodytes
ENSJJAG00000000053Upf3b9448.684ENSPANG00000004346UPF3A5661.091Papio_anubis
ENSJJAG00000000053Upf3b10088.559ENSPANG00000000900UPF3B10094.052Papio_anubis
ENSJJAG00000000053Upf3b9156.787ENSPKIG00000019226upf3b7477.391Paramormyrops_kingsleyae
ENSJJAG00000000053Upf3b5672.388ENSPSIG00000005833UPF3B8575.519Pelodiscus_sinensis
ENSJJAG00000000053Upf3b8553.286ENSPSIG00000007468UPF3A9852.619Pelodiscus_sinensis
ENSJJAG00000000053Upf3b5864.388ENSPMGG00000016067upf3b9564.388Periophthalmus_magnuspinnatus
ENSJJAG00000000053Upf3b10092.812ENSPEMG00000012352Upf3b10092.812Peromyscus_maniculatus_bairdii
ENSJJAG00000000053Upf3b9369.438ENSPCIG00000028914UPF3B9666.231Phascolarctos_cinereus
ENSJJAG00000000053Upf3b7957.205ENSPCIG00000019590-8658.586Phascolarctos_cinereus
ENSJJAG00000000053Upf3b9654.267ENSPLAG00000005105upf3b9457.174Poecilia_latipinna
ENSJJAG00000000053Upf3b9654.267ENSPLAG00000019922upf3b9457.174Poecilia_latipinna
ENSJJAG00000000053Upf3b8749.173ENSPLAG00000011960upf3a6473.636Poecilia_latipinna
ENSJJAG00000000053Upf3b9654.486ENSPMEG00000023532upf3b9457.174Poecilia_mexicana
ENSJJAG00000000053Upf3b8450.728ENSPPYG00000005536UPF3A5560.727Pongo_abelii
ENSJJAG00000000053Upf3b6893.382ENSPPYG00000020675-9793.382Pongo_abelii
ENSJJAG00000000053Upf3b5750.000ENSPCAG00000013124UPF3A5550.179Procavia_capensis
ENSJJAG00000000053Upf3b10085.567ENSPCAG00000009464UPF3B10085.361Procavia_capensis
ENSJJAG00000000053Upf3b10089.218ENSPCOG00000021960UPF3B10093.704Propithecus_coquereli
ENSJJAG00000000053Upf3b8447.805ENSPVAG00000005656UPF3A8640.826Pteropus_vampyrus
ENSJJAG00000000053Upf3b10075.052ENSPVAG00000014075UPF3B10073.196Pteropus_vampyrus
ENSJJAG00000000053Upf3b9455.134ENSPNYG00000009846upf3b9456.347Pundamilia_nyererei
ENSJJAG00000000053Upf3b9158.072ENSPNAG00000021528upf3b9172.609Pygocentrus_nattereri
ENSJJAG00000000053Upf3b10090.678ENSRNOG00000039994Upf3b10090.678Rattus_norvegicus
ENSJJAG00000000053Upf3b8286.010ENSRBIG00000037219UPF3B10085.751Rhinopithecus_bieti
ENSJJAG00000000053Upf3b8747.482ENSRBIG00000034007UPF3A5959.420Rhinopithecus_bieti
ENSJJAG00000000053Upf3b8749.176ENSRROG00000012212UPF3A5164.082Rhinopithecus_roxellana
ENSJJAG00000000053Upf3b10088.771ENSRROG00000041031UPF3B10094.052Rhinopithecus_roxellana
ENSJJAG00000000053Upf3b10088.347ENSSBOG00000019740UPF3B10093.680Saimiri_boliviensis_boliviensis
ENSJJAG00000000053Upf3b8853.505ENSSHAG00000009895UPF3A9852.103Sarcophilus_harrisii
ENSJJAG00000000053Upf3b8773.571ENSSHAG00000008634UPF3B9968.008Sarcophilus_harrisii
ENSJJAG00000000053Upf3b9157.631ENSSFOG00015005614upf3b9455.963Scleropages_formosus
ENSJJAG00000000053Upf3b9355.679ENSSMAG00000012913upf3b8466.544Scophthalmus_maximus
ENSJJAG00000000053Upf3b9042.597ENSSDUG00000009680upf3a6773.394Seriola_dumerili
ENSJJAG00000000053Upf3b8356.359ENSSDUG00000005682upf3b6859.337Seriola_dumerili
ENSJJAG00000000053Upf3b9353.778ENSSLDG00000003130upf3b6859.639Seriola_lalandi_dorsalis
ENSJJAG00000000053Upf3b8977.523ENSSARG00000004147UPF3B10079.954Sorex_araneus
ENSJJAG00000000053Upf3b8139.949ENSSARG00000007262UPF3A9238.776Sorex_araneus
ENSJJAG00000000053Upf3b9962.733ENSSPUG00000013082UPF3B9961.698Sphenodon_punctatus
ENSJJAG00000000053Upf3b9454.464ENSSPAG00000009989upf3b9455.457Stegastes_partitus
ENSJJAG00000000053Upf3b10088.771ENSSSCG00000012617UPF3B10088.559Sus_scrofa
ENSJJAG00000000053Upf3b9146.137ENSSSCG00000024679UPF3A6546.201Sus_scrofa
ENSJJAG00000000053Upf3b8968.531ENSTGUG00000003413UPF3B9968.998Taeniopygia_guttata
ENSJJAG00000000053Upf3b8355.802ENSTGUG00000009493UPF3A9954.815Taeniopygia_guttata
ENSJJAG00000000053Upf3b8754.699ENSTRUG00000010645upf3b9853.118Takifugu_rubripes
ENSJJAG00000000053Upf3b8654.237ENSTNIG00000015763upf3b6255.137Tetraodon_nigroviridis
ENSJJAG00000000053Upf3b6636.909ENSTBEG00000017186-6043.367Tupaia_belangeri
ENSJJAG00000000053Upf3b10071.959ENSTBEG00000003229UPF3B10071.753Tupaia_belangeri
ENSJJAG00000000053Upf3b10087.924ENSUAMG00000024565UPF3B10087.924Ursus_americanus
ENSJJAG00000000053Upf3b9381.720ENSUMAG00000002150UPF3B9981.720Ursus_maritimus
ENSJJAG00000000053Upf3b8585.922ENSVPAG00000009971UPF3B10085.680Vicugna_pacos
ENSJJAG00000000053Upf3b8941.775ENSVVUG00000013538UPF3A5948.377Vulpes_vulpes
ENSJJAG00000000053Upf3b10086.229ENSVVUG00000011594UPF3B9792.788Vulpes_vulpes
ENSJJAG00000000053Upf3b8755.924ENSXETG00000007440upf3b7876.243Xenopus_tropicalis
ENSJJAG00000000053Upf3b9351.794ENSXCOG00000016586upf3b9765.403Xiphophorus_couchianus
ENSJJAG00000000053Upf3b9454.139ENSXMAG00000013680upf3b9455.629Xiphophorus_maculatus

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