EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSJJAG00000000319 (Gene tree)
Gene ID: 101600035
Gene Symbol: Ptcd1
Alias: 1110069M14Rik
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Jaculus_jaculus
Status: putative
Strand: Plus strand
Length: 12143 bases
Position: chrJH725646.1:143280-155422
Accession: 101600035
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSJJAP00000000362	PPR	PF01535.20	2.6e-16	1	2
ENSJJAP00000000362	PPR	PF01535.20	2.6e-16	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSJJAT00000000397	-	1977	-	ENSJJAP00000000367	20 (aa)	-	-
ENSJJAT00000000392	-	2079	XM_004672710	ENSJJAP00000000362	692 (aa)	XP_004672767	-

Gene Model

Click here to download ENSJJAG00000000319's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSJJAG00000000319's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSJJAG00000000319	Ptcd1	100	72.727	ENSG00000106246	PTCD1	100	72.727	Homo_sapiens
ENSJJAG00000000319	Ptcd1	100	72.727	ENSG00000248919	ATP5MF-PTCD1	93	72.727	Homo_sapiens
ENSJJAG00000000319	Ptcd1	85	47.039	ENSAPOG00000010679	ptcd1	88	47.297	Acanthochromis_polyacanthus
ENSJJAG00000000319	Ptcd1	100	75.461	ENSAMEG00000006224	-	93	75.461	Ailuropoda_melanoleuca
ENSJJAG00000000319	Ptcd1	86	50.582	ENSACIG00000017861	ptcd1	85	50.664	Amphilophus_citrinellus
ENSJJAG00000000319	Ptcd1	90	48.025	ENSAOCG00000020741	-	87	48.025	Amphiprion_ocellaris
ENSJJAG00000000319	Ptcd1	85	47.475	ENSAOCG00000022617	ptcd1	86	47.731	Amphiprion_ocellaris
ENSJJAG00000000319	Ptcd1	90	47.867	ENSAPEG00000022632	ptcd1	87	47.867	Amphiprion_percula
ENSJJAG00000000319	Ptcd1	87	50.082	ENSATEG00000007016	ptcd1	83	49.672	Anabas_testudineus
ENSJJAG00000000319	Ptcd1	86	59.967	ENSAPLG00000006862	-	92	60.774	Anas_platyrhynchos
ENSJJAG00000000319	Ptcd1	98	56.348	ENSACAG00000012871	-	92	56.143	Anolis_carolinensis
ENSJJAG00000000319	Ptcd1	98	73.149	ENSANAG00000035790	-	100	73.149	Aotus_nancymaae
ENSJJAG00000000319	Ptcd1	87	49.672	ENSACLG00000002824	ptcd1	83	48.940	Astatotilapia_calliptera
ENSJJAG00000000319	Ptcd1	88	48.428	ENSAMXG00000037292	ptcd1	88	48.113	Astyanax_mexicanus
ENSJJAG00000000319	Ptcd1	100	73.333	ENSBTAG00000020440	-	87	73.617	Bos_taurus
ENSJJAG00000000319	Ptcd1	100	72.766	ENSCJAG00000015815	-	100	72.766	Callithrix_jacchus
ENSJJAG00000000319	Ptcd1	100	75.603	ENSCAFG00000015055	-	93	75.603	Canis_familiaris
ENSJJAG00000000319	Ptcd1	100	75.603	ENSCAFG00020014480	-	93	75.603	Canis_lupus_dingo
ENSJJAG00000000319	Ptcd1	100	73.050	ENSCHIG00000027000	-	99	73.333	Capra_hircus
ENSJJAG00000000319	Ptcd1	100	73.796	ENSTSYG00000029495	-	100	74.363	Carlito_syrichta
ENSJJAG00000000319	Ptcd1	94	75.076	ENSCAPG00000014660	-	100	75.076	Cavia_aperea
ENSJJAG00000000319	Ptcd1	100	74.504	ENSCPOG00000001780	-	100	74.504	Cavia_porcellus
ENSJJAG00000000319	Ptcd1	100	72.262	ENSCCAG00000034025	-	100	72.380	Cebus_capucinus
ENSJJAG00000000319	Ptcd1	100	73.475	ENSCATG00000040859	-	100	73.759	Cercocebus_atys
ENSJJAG00000000319	Ptcd1	98	76.479	ENSCLAG00000006354	-	100	76.346	Chinchilla_lanigera
ENSJJAG00000000319	Ptcd1	91	74.264	ENSCSAG00000017794	-	95	74.574	Chlorocebus_sabaeus
ENSJJAG00000000319	Ptcd1	88	61.208	ENSCPBG00000020866	-	85	61.208	Chrysemys_picta_bellii
ENSJJAG00000000319	Ptcd1	100	72.973	ENSCANG00000023441	-	100	73.115	Colobus_angolensis_palliatus
ENSJJAG00000000319	Ptcd1	100	77.273	ENSCGRG00001023686	Ptcd1	100	77.557	Cricetulus_griseus_chok1gshd
ENSJJAG00000000319	Ptcd1	99	76.836	ENSCGRG00000015031	Ptcd1	100	77.119	Cricetulus_griseus_crigri
ENSJJAG00000000319	Ptcd1	92	44.822	ENSCSEG00000002378	ptcd1	88	44.822	Cynoglossus_semilaevis
ENSJJAG00000000319	Ptcd1	86	48.350	ENSCVAG00000003621	ptcd1	88	48.020	Cyprinodon_variegatus
ENSJJAG00000000319	Ptcd1	86	48.026	ENSCVAG00000015826	ptcd1	83	48.440	Cyprinodon_variegatus
ENSJJAG00000000319	Ptcd1	87	49.838	ENSDARG00000076176	ptcd1	87	49.837	Danio_rerio
ENSJJAG00000000319	Ptcd1	100	69.748	ENSDNOG00000009957	-	100	70.845	Dasypus_novemcinctus
ENSJJAG00000000319	Ptcd1	99	74.530	ENSDORG00000000740	Ptcd1	100	74.674	Dipodomys_ordii
ENSJJAG00000000319	Ptcd1	89	42.598	ENSEBUG00000014515	ptcd1	97	42.314	Eptatretus_burgeri
ENSJJAG00000000319	Ptcd1	100	75.105	ENSEASG00005002480	-	100	75.527	Equus_asinus_asinus
ENSJJAG00000000319	Ptcd1	100	75.387	ENSECAG00000016617	-	100	75.809	Equus_caballus
ENSJJAG00000000319	Ptcd1	88	45.997	ENSELUG00000016517	ptcd1	83	46.154	Esox_lucius
ENSJJAG00000000319	Ptcd1	100	74.929	ENSFCAG00000015069	-	100	74.929	Felis_catus
ENSJJAG00000000319	Ptcd1	94	57.562	ENSFALG00000013803	-	92	58.309	Ficedula_albicollis
ENSJJAG00000000319	Ptcd1	100	74.858	ENSFDAG00000006393	-	100	74.858	Fukomys_damarensis
ENSJJAG00000000319	Ptcd1	76	47.114	ENSFHEG00000012491	ptcd1	89	47.212	Fundulus_heteroclitus
ENSJJAG00000000319	Ptcd1	87	46.040	ENSGMOG00000007639	ptcd1	94	46.040	Gadus_morhua
ENSJJAG00000000319	Ptcd1	89	57.854	ENSGALG00000004711	-	87	57.854	Gallus_gallus
ENSJJAG00000000319	Ptcd1	85	47.739	ENSGAFG00000013175	ptcd1	82	47.563	Gambusia_affinis
ENSJJAG00000000319	Ptcd1	89	47.284	ENSGACG00000016607	ptcd1	94	47.468	Gasterosteus_aculeatus
ENSJJAG00000000319	Ptcd1	81	62.191	ENSGAGG00000021832	-	84	61.770	Gopherus_agassizii
ENSJJAG00000000319	Ptcd1	99	72.688	ENSGGOG00000015123	-	99	72.688	Gorilla_gorilla
ENSJJAG00000000319	Ptcd1	87	49.672	ENSHBUG00000018275	ptcd1	83	48.940	Haplochromis_burtoni
ENSJJAG00000000319	Ptcd1	100	75.779	ENSHGLG00000017621	-	100	76.062	Heterocephalus_glaber_female
ENSJJAG00000000319	Ptcd1	100	75.779	ENSHGLG00100007218	-	100	76.062	Heterocephalus_glaber_male
ENSJJAG00000000319	Ptcd1	85	47.716	ENSHCOG00000010784	ptcd1	82	47.579	Hippocampus_comes
ENSJJAG00000000319	Ptcd1	100	75.740	ENSSTOG00000001682	-	100	75.740	Ictidomys_tridecemlineatus
ENSJJAG00000000319	Ptcd1	84	48.983	ENSKMAG00000008708	ptcd1	81	49.239	Kryptolebias_marmoratus
ENSJJAG00000000319	Ptcd1	86	48.185	ENSLBEG00000008061	ptcd1	82	48.425	Labrus_bergylta
ENSJJAG00000000319	Ptcd1	92	56.146	ENSLACG00000011172	ptcd1	85	58.671	Latimeria_chalumnae
ENSJJAG00000000319	Ptcd1	91	52.722	ENSLOCG00000004833	ptcd1	99	52.411	Lepisosteus_oculatus
ENSJJAG00000000319	Ptcd1	100	70.099	ENSLAFG00000002588	-	100	70.339	Loxodonta_africana
ENSJJAG00000000319	Ptcd1	100	73.191	ENSMFAG00000041324	-	100	73.475	Macaca_fascicularis
ENSJJAG00000000319	Ptcd1	100	73.050	ENSMMUG00000030408	-	100	73.333	Macaca_mulatta
ENSJJAG00000000319	Ptcd1	100	73.191	ENSMNEG00000043786	-	100	73.475	Macaca_nemestrina
ENSJJAG00000000319	Ptcd1	100	61.418	ENSMLEG00000031179	-	100	57.305	Mandrillus_leucophaeus
ENSJJAG00000000319	Ptcd1	93	48.260	ENSMAMG00000007623	ptcd1	89	48.260	Mastacembelus_armatus
ENSJJAG00000000319	Ptcd1	87	48.940	ENSMZEG00005012722	ptcd1	83	48.940	Maylandia_zebra
ENSJJAG00000000319	Ptcd1	98	55.619	ENSMGAG00000004211	-	91	56.503	Meleagris_gallopavo
ENSJJAG00000000319	Ptcd1	100	74.894	ENSMICG00000017428	-	100	75.354	Microcebus_murinus
ENSJJAG00000000319	Ptcd1	88	47.078	ENSMMOG00000020243	ptcd1	92	46.709	Mola_mola
ENSJJAG00000000319	Ptcd1	92	61.271	ENSMODG00000001350	-	89	61.422	Monodelphis_domestica
ENSJJAG00000000319	Ptcd1	88	49.035	ENSMALG00000018442	ptcd1	85	48.083	Monopterus_albus
ENSJJAG00000000319	Ptcd1	99	77.922	MGP_CAROLIEiJ_G0028011	Ptcd1	99	78.211	Mus_caroli
ENSJJAG00000000319	Ptcd1	99	77.345	ENSMUSG00000029624	Ptcd1	99	77.633	Mus_musculus
ENSJJAG00000000319	Ptcd1	99	77.312	MGP_PahariEiJ_G0024580	Ptcd1	99	77.601	Mus_pahari
ENSJJAG00000000319	Ptcd1	99	77.778	MGP_SPRETEiJ_G0029012	Ptcd1	99	77.922	Mus_spretus
ENSJJAG00000000319	Ptcd1	100	75.887	ENSMPUG00000016518	-	100	75.887	Mustela_putorius_furo
ENSJJAG00000000319	Ptcd1	100	75.915	ENSMLUG00000010994	-	94	76.197	Myotis_lucifugus
ENSJJAG00000000319	Ptcd1	87	49.837	ENSNBRG00000010079	ptcd1	86	49.109	Neolamprologus_brichardi
ENSJJAG00000000319	Ptcd1	83	74.435	ENSNLEG00000011060	-	95	74.435	Nomascus_leucogenys
ENSJJAG00000000319	Ptcd1	97	60.976	ENSMEUG00000006930	-	99	60.606	Notamacropus_eugenii
ENSJJAG00000000319	Ptcd1	89	73.488	ENSOPRG00000013647	-	90	73.488	Ochotona_princeps
ENSJJAG00000000319	Ptcd1	85	49.410	ENSONIG00000003168	ptcd1	95	48.658	Oreochromis_niloticus
ENSJJAG00000000319	Ptcd1	82	57.513	ENSOANG00000007728	-	74	56.591	Ornithorhynchus_anatinus
ENSJJAG00000000319	Ptcd1	99	71.086	ENSOCUG00000010584	-	98	71.086	Oryctolagus_cuniculus
ENSJJAG00000000319	Ptcd1	88	47.947	ENSORLG00000009275	ptcd1	86	47.954	Oryzias_latipes
ENSJJAG00000000319	Ptcd1	89	47.419	ENSORLG00020000988	ptcd1	86	47.947	Oryzias_latipes_hni
ENSJJAG00000000319	Ptcd1	88	47.876	ENSORLG00015010557	ptcd1	86	47.869	Oryzias_latipes_hsok
ENSJJAG00000000319	Ptcd1	88	48.371	ENSOMEG00000020627	ptcd1	88	48.039	Oryzias_melastigma
ENSJJAG00000000319	Ptcd1	99	72.103	ENSOGAG00000010877	-	99	72.389	Otolemur_garnettii
ENSJJAG00000000319	Ptcd1	100	68.980	ENSOARG00000018676	-	100	69.263	Ovis_aries
ENSJJAG00000000319	Ptcd1	100	72.585	ENSPPAG00000036024	-	100	72.585	Pan_paniscus
ENSJJAG00000000319	Ptcd1	100	75.857	ENSPPRG00000003478	-	100	75.857	Panthera_pardus
ENSJJAG00000000319	Ptcd1	100	72.869	ENSPTRG00000019452	-	100	72.869	Pan_troglodytes
ENSJJAG00000000319	Ptcd1	100	73.475	ENSPANG00000016730	-	100	73.759	Papio_anubis
ENSJJAG00000000319	Ptcd1	93	50.000	ENSPKIG00000014215	ptcd1	95	50.760	Paramormyrops_kingsleyae
ENSJJAG00000000319	Ptcd1	86	60.697	ENSPSIG00000011184	-	100	60.365	Pelodiscus_sinensis
ENSJJAG00000000319	Ptcd1	74	42.476	ENSPMAG00000009667	ptcd1	100	41.288	Petromyzon_marinus
ENSJJAG00000000319	Ptcd1	90	64.431	ENSPCIG00000024778	-	87	64.165	Phascolarctos_cinereus
ENSJJAG00000000319	Ptcd1	89	45.984	ENSPFOG00000004458	ptcd1	89	45.524	Poecilia_formosa
ENSJJAG00000000319	Ptcd1	89	45.827	ENSPLAG00000011051	ptcd1	88	45.622	Poecilia_latipinna
ENSJJAG00000000319	Ptcd1	89	46.069	ENSPMEG00000020547	ptcd1	89	45.152	Poecilia_mexicana
ENSJJAG00000000319	Ptcd1	88	45.714	ENSPREG00000000059	ptcd1	86	45.397	Poecilia_reticulata
ENSJJAG00000000319	Ptcd1	94	74.426	ENSPPYG00000017377	-	98	74.426	Pongo_abelii
ENSJJAG00000000319	Ptcd1	82	73.239	ENSPCAG00000001852	-	89	73.239	Procavia_capensis
ENSJJAG00000000319	Ptcd1	98	75.398	ENSPCOG00000018596	-	98	75.758	Propithecus_coquereli
ENSJJAG00000000319	Ptcd1	66	89.000	ENSPVAG00000007529	-	72	89.000	Pteropus_vampyrus
ENSJJAG00000000319	Ptcd1	87	49.589	ENSPNYG00000019993	ptcd1	83	48.856	Pundamilia_nyererei
ENSJJAG00000000319	Ptcd1	89	50.397	ENSPNAG00000014931	ptcd1	92	49.080	Pygocentrus_nattereri
ENSJJAG00000000319	Ptcd1	99	77.438	ENSRNOG00000000987	Ptcd1	99	77.729	Rattus_norvegicus
ENSJJAG00000000319	Ptcd1	100	73.400	ENSRBIG00000043393	-	100	73.542	Rhinopithecus_bieti
ENSJJAG00000000319	Ptcd1	100	73.542	ENSRROG00000036420	-	100	73.684	Rhinopithecus_roxellana
ENSJJAG00000000319	Ptcd1	100	72.869	ENSSBOG00000024114	-	100	72.869	Saimiri_boliviensis_boliviensis
ENSJJAG00000000319	Ptcd1	99	55.738	ENSSHAG00000011376	-	94	62.258	Sarcophilus_harrisii
ENSJJAG00000000319	Ptcd1	90	55.000	ENSSFOG00015007909	ptcd1	85	54.304	Scleropages_formosus
ENSJJAG00000000319	Ptcd1	88	46.743	ENSSMAG00000000218	ptcd1	94	46.493	Scophthalmus_maximus
ENSJJAG00000000319	Ptcd1	91	47.551	ENSSDUG00000015671	ptcd1	88	47.096	Seriola_dumerili
ENSJJAG00000000319	Ptcd1	89	47.771	ENSSLDG00000014261	ptcd1	88	47.709	Seriola_lalandi_dorsalis
ENSJJAG00000000319	Ptcd1	88	57.393	ENSSPUG00000003540	-	84	57.552	Sphenodon_punctatus
ENSJJAG00000000319	Ptcd1	89	48.423	ENSSPAG00000011049	ptcd1	84	48.576	Stegastes_partitus
ENSJJAG00000000319	Ptcd1	93	74.808	ENSSSCG00000007622	-	98	74.808	Sus_scrofa
ENSJJAG00000000319	Ptcd1	88	60.328	ENSTGUG00000007563	-	99	60.984	Taeniopygia_guttata
ENSJJAG00000000319	Ptcd1	86	47.920	ENSTRUG00000013471	ptcd1	81	46.962	Takifugu_rubripes
ENSJJAG00000000319	Ptcd1	85	48.911	ENSTNIG00000008271	ptcd1	84	48.576	Tetraodon_nigroviridis
ENSJJAG00000000319	Ptcd1	100	73.864	ENSTBEG00000011021	-	100	73.864	Tupaia_belangeri
ENSJJAG00000000319	Ptcd1	100	72.546	ENSTTRG00000003006	-	100	71.977	Tursiops_truncatus
ENSJJAG00000000319	Ptcd1	100	75.177	ENSUAMG00000008049	-	100	75.177	Ursus_americanus
ENSJJAG00000000319	Ptcd1	99	76.353	ENSVVUG00000008836	-	100	76.353	Vulpes_vulpes
ENSJJAG00000000319	Ptcd1	96	50.952	ENSXETG00000009891	ptcd1	96	50.885	Xenopus_tropicalis
ENSJJAG00000000319	Ptcd1	89	46.709	ENSXMAG00000015540	ptcd1	89	45.525	Xiphophorus_maculatus