EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSJJAG00000002593 (Gene tree)
Gene ID: 101613887
Gene Symbol: Smarca1
Alias: 5730494M04Rik|Snf2l
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Jaculus_jaculus
Status: putative
Strand: Minus strand
Length: 87142 bases
Position: chrJH725449.1:10140404-10227545
Accession: 101613887
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSJJAP00000001839	ResIII	PF04851.15	7.4e-12	1	1
ENSJJAP00000001823	ResIII	PF04851.15	8e-12	1	1
ENSJJAP00000001839	DEAD	PF00270.29	5.7e-07	1	1
ENSJJAP00000001823	DEAD	PF00270.29	6.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSJJAT00000003245	-	3249	-	ENSJJAP00000001839	1040 (aa)	-	UPI000333105E
ENSJJAT00000003203	-	3186	XM_004653947	ENSJJAP00000001823	1061 (aa)	XP_004654004	UPI00064D68F3

Gene Model

Click here to download ENSJJAG00000002593's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSJJAG00000002593's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSJJAG00000002593	Smarca1	93	84.024	ENSJJAG00000014965	Smarca5	93	84.178
ENSJJAG00000002593	Smarca1	57	47.410	ENSJJAG00000000865	Hells	71	47.410

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSJJAG00000002593	Smarca1	100	96.143	ENSG00000102038	SMARCA1	100	96.143	Homo_sapiens
ENSJJAG00000002593	Smarca1	92	82.263	ENSAPOG00000016035	smarca5	98	83.151	Acanthochromis_polyacanthus
ENSJJAG00000002593	Smarca1	100	93.860	ENSAMEG00000015218	SMARCA1	100	93.953	Ailuropoda_melanoleuca
ENSJJAG00000002593	Smarca1	85	83.167	ENSACIG00000016982	smarca5	99	83.259	Amphilophus_citrinellus
ENSJJAG00000002593	Smarca1	92	82.263	ENSAOCG00000015578	smarca5	95	81.307	Amphiprion_ocellaris
ENSJJAG00000002593	Smarca1	92	82.263	ENSAPEG00000011117	smarca5	99	83.137	Amphiprion_percula
ENSJJAG00000002593	Smarca1	92	83.229	ENSATEG00000012894	smarca5	97	80.456	Anabas_testudineus
ENSJJAG00000002593	Smarca1	93	91.692	ENSAPLG00000013149	SMARCA1	100	91.692	Anas_platyrhynchos
ENSJJAG00000002593	Smarca1	97	89.463	ENSACAG00000011376	SMARCA1	96	90.109	Anolis_carolinensis
ENSJJAG00000002593	Smarca1	98	91.179	ENSANAG00000023098	SMARCA1	98	91.275	Aotus_nancymaae
ENSJJAG00000002593	Smarca1	98	78.640	ENSACLG00000025356	smarca5	95	81.745	Astatotilapia_calliptera
ENSJJAG00000002593	Smarca1	88	88.344	ENSAMXG00000011227	smarca1	99	89.346	Astyanax_mexicanus
ENSJJAG00000002593	Smarca1	98	79.633	ENSAMXG00000005709	smarca5	94	82.653	Astyanax_mexicanus
ENSJJAG00000002593	Smarca1	99	94.701	ENSBTAG00000002292	SMARCA1	100	93.815	Bos_taurus
ENSJJAG00000002593	Smarca1	92	63.402	WBGene00002169	isw-1	96	62.959	Caenorhabditis_elegans
ENSJJAG00000002593	Smarca1	99	96.329	ENSCJAG00000002868	SMARCA1	98	96.329	Callithrix_jacchus
ENSJJAG00000002593	Smarca1	100	86.111	ENSCAFG00000018673	SMARCA1	99	87.662	Canis_familiaris
ENSJJAG00000002593	Smarca1	100	95.579	ENSCAFG00020001751	SMARCA1	100	95.673	Canis_lupus_dingo
ENSJJAG00000002593	Smarca1	100	94.559	ENSCHIG00000009837	SMARCA1	100	94.747	Capra_hircus
ENSJJAG00000002593	Smarca1	95	96.517	ENSTSYG00000004240	SMARCA1	99	96.360	Carlito_syrichta
ENSJJAG00000002593	Smarca1	97	95.813	ENSCPOG00000013601	SMARCA1	96	96.260	Cavia_porcellus
ENSJJAG00000002593	Smarca1	98	92.905	ENSCCAG00000030817	SMARCA1	98	93.001	Cebus_capucinus
ENSJJAG00000002593	Smarca1	100	96.545	ENSCATG00000015921	SMARCA1	100	96.545	Cercocebus_atys
ENSJJAG00000002593	Smarca1	100	95.484	ENSCLAG00000002171	SMARCA1	100	95.484	Chinchilla_lanigera
ENSJJAG00000002593	Smarca1	100	96.237	ENSCSAG00000008460	SMARCA1	100	96.237	Chlorocebus_sabaeus
ENSJJAG00000002593	Smarca1	95	91.188	ENSCPBG00000001146	SMARCA1	95	91.188	Chrysemys_picta_bellii
ENSJJAG00000002593	Smarca1	92	73.271	ENSCING00000004110	swi/snf	99	71.713	Ciona_intestinalis
ENSJJAG00000002593	Smarca1	93	72.812	ENSCSAVG00000004620	-	100	74.053	Ciona_savignyi
ENSJJAG00000002593	Smarca1	100	96.049	ENSCANG00000007183	SMARCA1	100	96.049	Colobus_angolensis_palliatus
ENSJJAG00000002593	Smarca1	100	93.797	ENSCGRG00001010776	Smarca1	98	94.923	Cricetulus_griseus_chok1gshd
ENSJJAG00000002593	Smarca1	95	95.455	ENSCGRG00000015301	Smarca1	99	95.551	Cricetulus_griseus_crigri
ENSJJAG00000002593	Smarca1	97	79.534	ENSCSEG00000000328	smarca5	95	81.709	Cynoglossus_semilaevis
ENSJJAG00000002593	Smarca1	93	81.864	ENSCVAG00000008668	smarca5	99	82.803	Cyprinodon_variegatus
ENSJJAG00000002593	Smarca1	93	85.126	ENSDARG00000012776	smarca1	97	84.646	Danio_rerio
ENSJJAG00000002593	Smarca1	98	78.785	ENSDARG00000052348	smarca5	95	81.187	Danio_rerio
ENSJJAG00000002593	Smarca1	99	94.305	ENSDNOG00000004315	SMARCA1	100	94.305	Dasypus_novemcinctus
ENSJJAG00000002593	Smarca1	100	95.677	ENSDORG00000009270	Smarca1	98	95.788	Dipodomys_ordii
ENSJJAG00000002593	Smarca1	94	71.935	FBgn0011604	Iswi	98	71.611	Drosophila_melanogaster
ENSJJAG00000002593	Smarca1	79	93.750	ENSETEG00000017426	SMARCA1	86	93.750	Echinops_telfairi
ENSJJAG00000002593	Smarca1	93	80.183	ENSEBUG00000001239	smarca5	95	81.478	Eptatretus_burgeri
ENSJJAG00000002593	Smarca1	93	92.418	ENSEASG00005008218	SMARCA1	99	92.246	Equus_asinus_asinus
ENSJJAG00000002593	Smarca1	100	94.747	ENSECAG00000012106	SMARCA1	100	94.934	Equus_caballus
ENSJJAG00000002593	Smarca1	77	97.020	ENSEEUG00000014927	SMARCA1	83	97.020	Erinaceus_europaeus
ENSJJAG00000002593	Smarca1	95	84.881	ENSELUG00000010515	smarca1	98	85.017	Esox_lucius
ENSJJAG00000002593	Smarca1	100	95.857	ENSFCAG00000018496	SMARCA1	100	95.857	Felis_catus
ENSJJAG00000002593	Smarca1	88	92.442	ENSFALG00000000209	SMARCA1	98	92.442	Ficedula_albicollis
ENSJJAG00000002593	Smarca1	95	95.319	ENSFDAG00000009818	SMARCA1	99	95.319	Fukomys_damarensis
ENSJJAG00000002593	Smarca1	93	82.270	ENSFHEG00000007687	smarca5	91	84.795	Fundulus_heteroclitus
ENSJJAG00000002593	Smarca1	95	89.909	ENSGALG00000008431	SMARCA1	97	91.260	Gallus_gallus
ENSJJAG00000002593	Smarca1	93	82.067	ENSGAFG00000017731	smarca5	95	81.508	Gambusia_affinis
ENSJJAG00000002593	Smarca1	92	92.593	ENSGAGG00000023575	SMARCA1	100	92.593	Gopherus_agassizii
ENSJJAG00000002593	Smarca1	70	96.000	ENSGGOG00000012841	-	95	96.000	Gorilla_gorilla
ENSJJAG00000002593	Smarca1	100	95.014	ENSHGLG00000003080	SMARCA1	100	95.108	Heterocephalus_glaber_female
ENSJJAG00000002593	Smarca1	94	95.804	ENSHGLG00100001102	SMARCA1	100	95.804	Heterocephalus_glaber_male
ENSJJAG00000002593	Smarca1	93	82.299	ENSHCOG00000005458	smarca5	97	80.754	Hippocampus_comes
ENSJJAG00000002593	Smarca1	92	82.041	ENSIPUG00000005229	SMARCA5	96	82.041	Ictalurus_punctatus
ENSJJAG00000002593	Smarca1	94	85.540	ENSIPUG00000016905	Smarca1	99	85.627	Ictalurus_punctatus
ENSJJAG00000002593	Smarca1	100	95.861	ENSSTOG00000014524	SMARCA1	100	95.861	Ictidomys_tridecemlineatus
ENSJJAG00000002593	Smarca1	93	82.299	ENSKMAG00000003777	smarca5	95	81.608	Kryptolebias_marmoratus
ENSJJAG00000002593	Smarca1	94	81.307	ENSLBEG00000018112	smarca5	95	81.307	Labrus_bergylta
ENSJJAG00000002593	Smarca1	89	83.029	ENSLBEG00000013295	SMARCA1	100	84.071	Labrus_bergylta
ENSJJAG00000002593	Smarca1	96	88.276	ENSLACG00000016697	SMARCA1	99	88.526	Latimeria_chalumnae
ENSJJAG00000002593	Smarca1	94	87.824	ENSLOCG00000014591	smarca1	97	87.824	Lepisosteus_oculatus
ENSJJAG00000002593	Smarca1	95	95.924	ENSLAFG00000000896	SMARCA1	100	95.924	Loxodonta_africana
ENSJJAG00000002593	Smarca1	100	96.545	ENSMFAG00000002117	SMARCA1	100	96.545	Macaca_fascicularis
ENSJJAG00000002593	Smarca1	100	96.545	ENSMMUG00000008818	SMARCA1	100	96.545	Macaca_mulatta
ENSJJAG00000002593	Smarca1	100	96.545	ENSMNEG00000041768	SMARCA1	100	96.545	Macaca_nemestrina
ENSJJAG00000002593	Smarca1	100	96.237	ENSMLEG00000043198	SMARCA1	100	96.237	Mandrillus_leucophaeus
ENSJJAG00000002593	Smarca1	93	82.168	ENSMAMG00000014294	smarca5	96	80.632	Mastacembelus_armatus
ENSJJAG00000002593	Smarca1	98	78.640	ENSMZEG00005009369	smarca5	95	81.745	Maylandia_zebra
ENSJJAG00000002593	Smarca1	95	89.587	ENSMGAG00000007042	SMARCA1	99	89.587	Meleagris_gallopavo
ENSJJAG00000002593	Smarca1	100	95.033	ENSMAUG00000008133	Smarca1	100	95.129	Mesocricetus_auratus
ENSJJAG00000002593	Smarca1	98	95.873	ENSMICG00000015768	SMARCA1	98	95.873	Microcebus_murinus
ENSJJAG00000002593	Smarca1	100	95.014	ENSMOCG00000009464	Smarca1	100	95.484	Microtus_ochrogaster
ENSJJAG00000002593	Smarca1	94	79.698	ENSMMOG00000005547	smarca5	99	79.698	Mola_mola
ENSJJAG00000002593	Smarca1	98	88.610	ENSMODG00000013187	-	97	90.278	Monodelphis_domestica
ENSJJAG00000002593	Smarca1	93	81.892	ENSMALG00000002081	smarca5	97	81.576	Monopterus_albus
ENSJJAG00000002593	Smarca1	100	95.951	MGP_CAROLIEiJ_G0033034	Smarca1	100	95.951	Mus_caroli
ENSJJAG00000002593	Smarca1	100	96.045	ENSMUSG00000031099	Smarca1	100	96.045	Mus_musculus
ENSJJAG00000002593	Smarca1	100	95.951	MGP_PahariEiJ_G0031579	Smarca1	100	95.951	Mus_pahari
ENSJJAG00000002593	Smarca1	100	96.045	MGP_SPRETEiJ_G0034192	Smarca1	100	96.045	Mus_spretus
ENSJJAG00000002593	Smarca1	100	94.326	ENSMPUG00000017423	SMARCA1	95	94.419	Mustela_putorius_furo
ENSJJAG00000002593	Smarca1	98	92.711	ENSMLUG00000029614	SMARCA1	98	92.424	Myotis_lucifugus
ENSJJAG00000002593	Smarca1	100	96.084	ENSNGAG00000006492	Smarca1	100	96.084	Nannospalax_galili
ENSJJAG00000002593	Smarca1	93	82.270	ENSNBRG00000004463	smarca5	99	81.846	Neolamprologus_brichardi
ENSJJAG00000002593	Smarca1	98	94.218	ENSNLEG00000015179	SMARCA1	99	96.353	Nomascus_leucogenys
ENSJJAG00000002593	Smarca1	90	81.197	ENSMEUG00000008819	SMARCA1	100	81.197	Notamacropus_eugenii
ENSJJAG00000002593	Smarca1	98	94.288	ENSODEG00000012163	SMARCA1	98	94.288	Octodon_degus
ENSJJAG00000002593	Smarca1	98	78.736	ENSONIG00000009993	smarca5	95	81.846	Oreochromis_niloticus
ENSJJAG00000002593	Smarca1	92	93.004	ENSOANG00000002862	SMARCA1	100	93.004	Ornithorhynchus_anatinus
ENSJJAG00000002593	Smarca1	100	93.503	ENSOCUG00000001047	SMARCA1	100	94.073	Oryctolagus_cuniculus
ENSJJAG00000002593	Smarca1	93	82.197	ENSORLG00000021998	smarca5	96	80.655	Oryzias_latipes
ENSJJAG00000002593	Smarca1	93	82.299	ENSORLG00020017679	smarca5	96	80.754	Oryzias_latipes_hni
ENSJJAG00000002593	Smarca1	93	82.197	ENSORLG00015017210	smarca5	96	80.556	Oryzias_latipes_hsok
ENSJJAG00000002593	Smarca1	93	82.197	ENSOMEG00000000086	smarca5	97	80.556	Oryzias_melastigma
ENSJJAG00000002593	Smarca1	100	95.066	ENSOGAG00000004399	SMARCA1	100	95.066	Otolemur_garnettii
ENSJJAG00000002593	Smarca1	95	95.088	ENSOARG00000014638	SMARCA1	100	96.751	Ovis_aries
ENSJJAG00000002593	Smarca1	100	96.143	ENSPPAG00000034647	SMARCA1	100	96.143	Pan_paniscus
ENSJJAG00000002593	Smarca1	100	95.857	ENSPPRG00000008929	SMARCA1	100	95.857	Panthera_pardus
ENSJJAG00000002593	Smarca1	95	94.423	ENSPTIG00000000915	SMARCA1	98	94.423	Panthera_tigris_altaica
ENSJJAG00000002593	Smarca1	100	96.545	ENSPTRG00000049876	SMARCA1	100	96.545	Pan_troglodytes
ENSJJAG00000002593	Smarca1	100	96.143	ENSPANG00000003871	SMARCA1	100	96.143	Papio_anubis
ENSJJAG00000002593	Smarca1	91	86.779	ENSPKIG00000013411	smarca1	96	87.025	Paramormyrops_kingsleyae
ENSJJAG00000002593	Smarca1	95	90.079	ENSPSIG00000010101	SMARCA1	100	92.284	Pelodiscus_sinensis
ENSJJAG00000002593	Smarca1	100	95.702	ENSPEMG00000017503	Smarca1	100	95.702	Peromyscus_maniculatus_bairdii
ENSJJAG00000002593	Smarca1	97	89.448	ENSPCIG00000015460	SMARCA1	98	90.855	Phascolarctos_cinereus
ENSJJAG00000002593	Smarca1	93	82.299	ENSPFOG00000007649	smarca5	95	81.508	Poecilia_formosa
ENSJJAG00000002593	Smarca1	93	82.299	ENSPLAG00000003363	smarca5	95	81.508	Poecilia_latipinna
ENSJJAG00000002593	Smarca1	93	82.197	ENSPMEG00000019849	smarca5	94	82.510	Poecilia_mexicana
ENSJJAG00000002593	Smarca1	93	82.197	ENSPREG00000023250	smarca5	94	82.510	Poecilia_reticulata
ENSJJAG00000002593	Smarca1	98	93.384	ENSPPYG00000020703	SMARCA1	98	93.480	Pongo_abelii
ENSJJAG00000002593	Smarca1	78	88.636	ENSPCOG00000020722	SMARCA1	94	92.342	Propithecus_coquereli
ENSJJAG00000002593	Smarca1	92	94.388	ENSPVAG00000003805	SMARCA1	92	94.466	Pteropus_vampyrus
ENSJJAG00000002593	Smarca1	56	83.836	ENSPNYG00000012299	smarca5	92	82.667	Pundamilia_nyererei
ENSJJAG00000002593	Smarca1	100	95.669	ENSRNOG00000003762	Smarca1	100	95.669	Rattus_norvegicus
ENSJJAG00000002593	Smarca1	100	96.049	ENSRROG00000034167	SMARCA1	100	96.049	Rhinopithecus_roxellana
ENSJJAG00000002593	Smarca1	95	95.772	ENSSBOG00000020641	SMARCA1	100	97.462	Saimiri_boliviensis_boliviensis
ENSJJAG00000002593	Smarca1	92	86.125	ENSSHAG00000013518	SMARCA1	99	86.125	Sarcophilus_harrisii
ENSJJAG00000002593	Smarca1	94	81.043	ENSSFOG00015016794	smarca5	100	82.371	Scleropages_formosus
ENSJJAG00000002593	Smarca1	96	84.946	ENSSFOG00015009043	smarca1	99	85.503	Scleropages_formosus
ENSJJAG00000002593	Smarca1	93	81.250	ENSSMAG00000004801	smarca5	95	81.250	Scophthalmus_maximus
ENSJJAG00000002593	Smarca1	93	81.763	ENSSDUG00000020690	smarca5	96	81.206	Seriola_dumerili
ENSJJAG00000002593	Smarca1	93	81.763	ENSSLDG00000025190	smarca5	96	81.206	Seriola_lalandi_dorsalis
ENSJJAG00000002593	Smarca1	80	97.518	ENSSARG00000000842	SMARCA1	86	97.518	Sorex_araneus
ENSJJAG00000002593	Smarca1	95	90.303	ENSSPUG00000000590	SMARCA1	96	90.303	Sphenodon_punctatus
ENSJJAG00000002593	Smarca1	93	81.966	ENSSPAG00000002894	smarca5	97	83.260	Stegastes_partitus
ENSJJAG00000002593	Smarca1	99	94.899	ENSSSCG00000012649	SMARCA1	100	95.091	Sus_scrofa
ENSJJAG00000002593	Smarca1	93	91.287	ENSTGUG00000003899	-	100	91.287	Taeniopygia_guttata
ENSJJAG00000002593	Smarca1	93	82.168	ENSTRUG00000014094	smarca5	95	81.608	Takifugu_rubripes
ENSJJAG00000002593	Smarca1	92	81.448	ENSTNIG00000017717	smarca5	94	80.603	Tetraodon_nigroviridis
ENSJJAG00000002593	Smarca1	95	88.956	ENSTBEG00000014973	SMARCA1	100	88.956	Tupaia_belangeri
ENSJJAG00000002593	Smarca1	94	92.525	ENSTTRG00000006168	SMARCA1	100	92.525	Tursiops_truncatus
ENSJJAG00000002593	Smarca1	100	95.108	ENSUAMG00000020201	SMARCA1	100	95.202	Ursus_americanus
ENSJJAG00000002593	Smarca1	95	91.616	ENSUMAG00000004073	SMARCA1	99	96.420	Ursus_maritimus
ENSJJAG00000002593	Smarca1	74	97.343	ENSVPAG00000010492	-	80	97.343	Vicugna_pacos
ENSJJAG00000002593	Smarca1	95	96.517	ENSVVUG00000008878	SMARCA1	100	97.286	Vulpes_vulpes
ENSJJAG00000002593	Smarca1	94	87.912	ENSXETG00000001526	smarca1	98	89.198	Xenopus_tropicalis
ENSJJAG00000002593	Smarca1	93	81.966	ENSXCOG00000011170	smarca5	98	81.407	Xiphophorus_couchianus
ENSJJAG00000002593	Smarca1	93	81.966	ENSXMAG00000009678	smarca5	98	83.660	Xiphophorus_maculatus