EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSJJAG00000004090 (Gene tree)
Gene ID: 101617205
Gene Symbol: Pabpc4l
Alias: C330050A14Rik|EG241989
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Jaculus_jaculus
Status: putative
Strand: Minus strand
Length: 1113 bases
Position: chrJH725453.1:7004983-7006095
Accession: 101617205
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSJJAP00000002396	RRM_5	PF13893.6	6.2e-18	1	3
ENSJJAP00000002396	RRM_5	PF13893.6	6.2e-18	2	3
ENSJJAP00000002396	RRM_5	PF13893.6	6.2e-18	3	3
ENSJJAP00000002396	RRM_1	PF00076.22	8e-86	1	4
ENSJJAP00000002396	RRM_1	PF00076.22	8e-86	2	4
ENSJJAP00000002396	RRM_1	PF00076.22	8e-86	3	4
ENSJJAP00000002396	RRM_1	PF00076.22	8e-86	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSJJAT00000004690	-	1113	XM_004655929	ENSJJAP00000002396	370 (aa)	XP_004655986	UPI000332F583

Gene Model

Click here to download ENSJJAG00000004090's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSJJAG00000004090's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSJJAG00000004090	Pabpc4l	97	64.624	ENSJJAG00000014258	Pabpc2	63	64.624
ENSJJAG00000004090	Pabpc4l	69	34.831	ENSJJAG00000013649	Cirbp	63	32.407
ENSJJAG00000004090	Pabpc4l	98	33.735	ENSJJAG00000008247	Elavl2	86	33.735
ENSJJAG00000004090	Pabpc4l	66	36.364	ENSJJAG00000012962	-	59	36.364
ENSJJAG00000004090	Pabpc4l	97	31.599	ENSJJAG00000017978	Tia1	85	30.328
ENSJJAG00000004090	Pabpc4l	96	62.051	ENSJJAG00000007037	-	98	62.051
ENSJJAG00000004090	Pabpc4l	99	68.919	ENSJJAG00000015918	Pabpc1	61	68.919
ENSJJAG00000004090	Pabpc4l	55	32.353	ENSJJAG00000020280	Celf1	64	32.353
ENSJJAG00000004090	Pabpc4l	64	38.372	ENSJJAG00000016892	Celf4	52	38.372
ENSJJAG00000004090	Pabpc4l	97	59.624	ENSJJAG00000011960	Pabpc5	98	59.624
ENSJJAG00000004090	Pabpc4l	98	56.812	ENSJJAG00000019230	Pabpc6	70	56.812
ENSJJAG00000004090	Pabpc4l	99	70.541	ENSJJAG00000007781	Pabpc4	61	70.541
ENSJJAG00000004090	Pabpc4l	98	34.940	ENSJJAG00000023513	Elavl3	90	34.940
ENSJJAG00000004090	Pabpc4l	74	37.037	ENSJJAG00000016114	Celf6	94	37.037
ENSJJAG00000004090	Pabpc4l	97	49.324	ENSJJAG00000022406	Pabpc1l	55	46.111
ENSJJAG00000004090	Pabpc4l	97	31.673	ENSJJAG00000005398	-	87	31.541

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSJJAG00000004090	Pabpc4l	99	82.927	ENSG00000254535	PABPC4L	99	82.927	Homo_sapiens
ENSJJAG00000004090	Pabpc4l	99	81.843	ENSANAG00000017199	PABPC4L	86	81.843	Aotus_nancymaae
ENSJJAG00000004090	Pabpc4l	100	81.892	ENSBTAG00000046902	PABPC4L	100	81.892	Bos_taurus
ENSJJAG00000004090	Pabpc4l	99	82.385	ENSCJAG00000045332	PABPC4L	86	82.385	Callithrix_jacchus
ENSJJAG00000004090	Pabpc4l	99	72.011	ENSCAFG00020019182	-	54	72.011	Canis_lupus_dingo
ENSJJAG00000004090	Pabpc4l	100	81.892	ENSCHIG00000007231	PABPC4L	100	81.892	Capra_hircus
ENSJJAG00000004090	Pabpc4l	97	76.347	ENSCAPG00000000555	PABPC4L	100	76.347	Cavia_aperea
ENSJJAG00000004090	Pabpc4l	99	73.442	ENSCPOG00000033167	PABPC4L	100	73.442	Cavia_porcellus
ENSJJAG00000004090	Pabpc4l	99	82.114	ENSCCAG00000031681	PABPC4L	86	82.114	Cebus_capucinus
ENSJJAG00000004090	Pabpc4l	99	78.049	ENSCLAG00000017628	PABPC4L	99	78.049	Chinchilla_lanigera
ENSJJAG00000004090	Pabpc4l	99	80.759	ENSCANG00000037677	PABPC4L	99	80.759	Colobus_angolensis_palliatus
ENSJJAG00000004090	Pabpc4l	99	80.488	ENSCGRG00001002070	Pabpc4l	99	80.488	Cricetulus_griseus_chok1gshd
ENSJJAG00000004090	Pabpc4l	99	80.488	ENSCGRG00000020086	Pabpc4l	99	80.488	Cricetulus_griseus_crigri
ENSJJAG00000004090	Pabpc4l	99	81.843	ENSDNOG00000031077	PABPC4L	95	81.843	Dasypus_novemcinctus
ENSJJAG00000004090	Pabpc4l	100	80.000	ENSEASG00005007883	PABPC4L	100	80.000	Equus_asinus_asinus
ENSJJAG00000004090	Pabpc4l	100	80.541	ENSECAG00000031416	PABPC4L	100	80.541	Equus_caballus
ENSJJAG00000004090	Pabpc4l	100	81.081	ENSFCAG00000028270	PABPC4L	100	81.081	Felis_catus
ENSJJAG00000004090	Pabpc4l	100	75.405	ENSFDAG00000019606	PABPC4L	100	75.405	Fukomys_damarensis
ENSJJAG00000004090	Pabpc4l	99	82.385	ENSGGOG00000024991	PABPC4L	99	82.385	Gorilla_gorilla
ENSJJAG00000004090	Pabpc4l	100	76.757	ENSHGLG00000020104	PABPC4L	100	76.757	Heterocephalus_glaber_female
ENSJJAG00000004090	Pabpc4l	100	76.757	ENSHGLG00100020648	PABPC4L	100	76.757	Heterocephalus_glaber_male
ENSJJAG00000004090	Pabpc4l	99	81.622	ENSSTOG00000019472	PABPC4L	99	81.622	Ictidomys_tridecemlineatus
ENSJJAG00000004090	Pabpc4l	99	81.301	ENSMAUG00000016313	Pabpc4l	99	81.301	Mesocricetus_auratus
ENSJJAG00000004090	Pabpc4l	99	83.469	ENSMICG00000029683	PABPC4L	99	83.469	Microcebus_murinus
ENSJJAG00000004090	Pabpc4l	99	81.843	ENSMOCG00000007551	Pabpc4l	99	81.843	Microtus_ochrogaster
ENSJJAG00000004090	Pabpc4l	99	77.507	MGP_CAROLIEiJ_G0024968	Pabpc4l	100	84.000	Mus_caroli
ENSJJAG00000004090	Pabpc4l	99	77.907	ENSMUSG00000090919	Pabpc4l	100	84.000	Mus_musculus
ENSJJAG00000004090	Pabpc4l	99	78.488	MGP_PahariEiJ_G0026409	Pabpc4l	100	82.000	Mus_pahari
ENSJJAG00000004090	Pabpc4l	99	77.326	MGP_SPRETEiJ_G0025903	Pabpc4l	100	84.000	Mus_spretus
ENSJJAG00000004090	Pabpc4l	99	74.526	ENSMLUG00000008254	PABPC4L	99	74.526	Myotis_lucifugus
ENSJJAG00000004090	Pabpc4l	99	84.011	ENSNGAG00000001502	Pabpc4l	99	84.011	Nannospalax_galili
ENSJJAG00000004090	Pabpc4l	99	82.656	ENSNLEG00000019300	PABPC4L	99	82.656	Nomascus_leucogenys
ENSJJAG00000004090	Pabpc4l	99	76.965	ENSOGAG00000026166	PABPC4L	99	76.965	Otolemur_garnettii
ENSJJAG00000004090	Pabpc4l	99	83.282	ENSPPAG00000043745	PABPC4L	93	83.282	Pan_paniscus
ENSJJAG00000004090	Pabpc4l	100	80.541	ENSPPRG00000018628	PABPC4L	100	80.541	Panthera_pardus
ENSJJAG00000004090	Pabpc4l	100	81.081	ENSPTIG00000010106	PABPC4L	100	81.081	Panthera_tigris_altaica
ENSJJAG00000004090	Pabpc4l	99	83.282	ENSPTRG00000045513	-	77	83.282	Pan_troglodytes
ENSJJAG00000004090	Pabpc4l	99	80.488	ENSPEMG00000012565	Pabpc4l	99	80.488	Peromyscus_maniculatus_bairdii
ENSJJAG00000004090	Pabpc4l	99	82.927	ENSPCOG00000025578	PABPC4L	99	82.927	Propithecus_coquereli
ENSJJAG00000004090	Pabpc4l	99	79.404	ENSRNOG00000029749	Pabpc4l	99	79.404	Rattus_norvegicus
ENSJJAG00000004090	Pabpc4l	99	81.030	ENSRBIG00000030229	PABPC4L	99	81.030	Rhinopithecus_bieti
ENSJJAG00000004090	Pabpc4l	99	80.759	ENSRROG00000020367	PABPC4L	99	80.759	Rhinopithecus_roxellana
ENSJJAG00000004090	Pabpc4l	99	81.572	ENSSBOG00000016382	PABPC4L	99	81.572	Saimiri_boliviensis_boliviensis
ENSJJAG00000004090	Pabpc4l	100	75.135	ENSSSCG00000009067	PABPC4L	100	75.135	Sus_scrofa
ENSJJAG00000004090	Pabpc4l	100	81.081	ENSUAMG00000001289	PABPC4L	100	81.081	Ursus_americanus
ENSJJAG00000004090	Pabpc4l	100	81.081	ENSUMAG00000014887	PABPC4L	100	81.081	Ursus_maritimus
ENSJJAG00000004090	Pabpc4l	90	73.171	ENSVVUG00000011060	-	75	73.171	Vulpes_vulpes