EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSJJAG00000004364 (Gene tree)
Gene ID: 101617119
Gene Symbol: -
Alias: -
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Jaculus_jaculus
Status: putative
Strand: Minus strand
Length: 27915 bases
Position: chrJH725452.1:22184095-22212009
Accession: 101617119
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSJJAP00000002508	AD	PF09793.9	1.3e-24	1	1
ENSJJAP00000002516	AD	PF09793.9	1.5e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSJJAT00000005003	-	898	XM_004655287	ENSJJAP00000002508	195 (aa)	XP_004655344	UPI000332F219
ENSJJAT00000005013	-	414	-	ENSJJAP00000002516	137 (aa)	-	-

Gene Model

Click here to download ENSJJAG00000004364's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSJJAG00000004364's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSJJAG00000004364	-	97	87.895	ENSJJAG00000011793	-	100	87.895
ENSJJAG00000004364	-	81	85.535	ENSJJAG00000014652	-	95	85.535

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSJJAG00000004364	-	100	98.974	ENSG00000161654	LSM12	100	98.974	Homo_sapiens
ENSJJAG00000004364	-	100	85.455	ENSAPOG00000007907	lsm12b	100	85.204	Acanthochromis_polyacanthus
ENSJJAG00000004364	-	100	99.083	ENSAMEG00000018321	LSM12	100	96.970	Ailuropoda_melanoleuca
ENSJJAG00000004364	-	100	84.545	ENSACIG00000008538	lsm12b	100	83.163	Amphilophus_citrinellus
ENSJJAG00000004364	-	100	85.455	ENSAOCG00000021847	lsm12b	88	84.694	Amphiprion_ocellaris
ENSJJAG00000004364	-	100	85.455	ENSAPEG00000002252	lsm12b	100	84.694	Amphiprion_percula
ENSJJAG00000004364	-	100	84.545	ENSATEG00000005705	lsm12b	100	84.184	Anabas_testudineus
ENSJJAG00000004364	-	99	92.746	ENSACAG00000004618	LSM12	99	92.746	Anolis_carolinensis
ENSJJAG00000004364	-	100	99.270	ENSANAG00000029011	LSM12	100	99.270	Aotus_nancymaae
ENSJJAG00000004364	-	100	84.545	ENSACLG00000026332	lsm12b	100	83.673	Astatotilapia_calliptera
ENSJJAG00000004364	-	100	81.081	ENSAMXG00000036117	lsm12a	91	78.571	Astyanax_mexicanus
ENSJJAG00000004364	-	100	84.685	ENSAMXG00000032952	lsm12b	100	83.673	Astyanax_mexicanus
ENSJJAG00000004364	-	100	98.974	ENSBTAG00000016252	LSM12	100	98.974	Bos_taurus
ENSJJAG00000004364	-	100	99.270	ENSCJAG00000048480	LSM12	100	99.270	Callithrix_jacchus
ENSJJAG00000004364	-	100	98.974	ENSCAFG00000014379	LSM12	92	98.974	Canis_familiaris
ENSJJAG00000004364	-	100	98.974	ENSCAFG00020012173	LSM12	100	98.974	Canis_lupus_dingo
ENSJJAG00000004364	-	100	98.974	ENSCHIG00000018175	LSM12	100	98.974	Capra_hircus
ENSJJAG00000004364	-	100	98.974	ENSTSYG00000036361	LSM12	100	98.974	Carlito_syrichta
ENSJJAG00000004364	-	81	95.495	ENSCAPG00000009647	LSM12	89	93.210	Cavia_aperea
ENSJJAG00000004364	-	100	97.080	ENSCPOG00000012860	LSM12	100	97.080	Cavia_porcellus
ENSJJAG00000004364	-	100	99.270	ENSCCAG00000032905	LSM12	100	99.270	Cebus_capucinus
ENSJJAG00000004364	-	100	99.270	ENSCATG00000030577	-	100	99.270	Cercocebus_atys
ENSJJAG00000004364	-	100	97.949	ENSCLAG00000015759	LSM12	100	97.949	Chinchilla_lanigera
ENSJJAG00000004364	-	100	98.462	ENSCSAG00000003486	LSM12	100	98.462	Chlorocebus_sabaeus
ENSJJAG00000004364	-	80	98.165	ENSCHOG00000001198	LSM12	100	98.165	Choloepus_hoffmanni
ENSJJAG00000004364	-	99	92.228	ENSCPBG00000027105	LSM12	99	92.228	Chrysemys_picta_bellii
ENSJJAG00000004364	-	100	99.270	ENSCANG00000043328	LSM12	100	99.270	Colobus_angolensis_palliatus
ENSJJAG00000004364	-	100	99.270	ENSCGRG00001002094	Lsm12	100	99.270	Cricetulus_griseus_chok1gshd
ENSJJAG00000004364	-	81	97.297	ENSCGRG00000004316	Lsm12	95	91.667	Cricetulus_griseus_crigri
ENSJJAG00000004364	-	100	83.673	ENSCSEG00000008434	lsm12b	100	83.673	Cynoglossus_semilaevis
ENSJJAG00000004364	-	100	84.545	ENSCVAG00000008755	lsm12b	100	83.673	Cyprinodon_variegatus
ENSJJAG00000004364	-	100	85.204	ENSDARG00000109510	lsm12b	100	85.204	Danio_rerio
ENSJJAG00000004364	-	100	76.531	ENSDARG00000028848	lsm12a	100	76.531	Danio_rerio
ENSJJAG00000004364	-	100	98.462	ENSDNOG00000002418	LSM12	91	98.462	Dasypus_novemcinctus
ENSJJAG00000004364	-	100	99.270	ENSDORG00000016381	Lsm12	100	99.270	Dipodomys_ordii
ENSJJAG00000004364	-	83	33.133	FBgn0030364	Lsm12	76	32.934	Drosophila_melanogaster
ENSJJAG00000004364	-	74	31.646	FBgn0036057	CG14164	83	31.646	Drosophila_melanogaster
ENSJJAG00000004364	-	100	98.462	ENSETEG00000008374	LSM12	100	98.462	Echinops_telfairi
ENSJJAG00000004364	-	90	86.857	ENSETEG00000011012	-	100	86.857	Echinops_telfairi
ENSJJAG00000004364	-	84	62.805	ENSEBUG00000016299	lsm12a	92	62.805	Eptatretus_burgeri
ENSJJAG00000004364	-	100	98.974	ENSEASG00005010155	LSM12	100	98.974	Equus_asinus_asinus
ENSJJAG00000004364	-	100	99.270	ENSECAG00000009071	LSM12	100	99.270	Equus_caballus
ENSJJAG00000004364	-	81	95.495	ENSEEUG00000002419	-	100	97.386	Erinaceus_europaeus
ENSJJAG00000004364	-	100	83.163	ENSELUG00000015538	lsm12b	100	78.571	Esox_lucius
ENSJJAG00000004364	-	100	84.545	ENSELUG00000000256	-	100	82.143	Esox_lucius
ENSJJAG00000004364	-	100	98.974	ENSFCAG00000037021	LSM12	100	98.974	Felis_catus
ENSJJAG00000004364	-	81	96.396	ENSFDAG00000008954	LSM12	87	97.973	Fukomys_damarensis
ENSJJAG00000004364	-	100	83.636	ENSFHEG00000019913	lsm12b	100	82.653	Fundulus_heteroclitus
ENSJJAG00000004364	-	81	83.784	ENSGMOG00000015449	lsm12b	100	82.911	Gadus_morhua
ENSJJAG00000004364	-	80	91.743	ENSGALG00000039803	LSM12	100	92.810	Gallus_gallus
ENSJJAG00000004364	-	100	84.545	ENSGAFG00000011829	lsm12b	100	83.163	Gambusia_affinis
ENSJJAG00000004364	-	81	83.784	ENSGACG00000003428	lsm12b	100	83.544	Gasterosteus_aculeatus
ENSJJAG00000004364	-	99	93.264	ENSGAGG00000021965	LSM12	99	93.264	Gopherus_agassizii
ENSJJAG00000004364	-	100	99.270	ENSGGOG00000010589	-	100	99.270	Gorilla_gorilla
ENSJJAG00000004364	-	85	85.030	ENSHBUG00000007667	lsm12b	74	85.030	Haplochromis_burtoni
ENSJJAG00000004364	-	100	99.270	ENSHGLG00000011411	LSM12	100	99.270	Heterocephalus_glaber_female
ENSJJAG00000004364	-	80	98.182	ENSHGLG00100000241	LSM12	96	86.188	Heterocephalus_glaber_male
ENSJJAG00000004364	-	100	83.163	ENSHCOG00000002094	lsm12b	100	83.163	Hippocampus_comes
ENSJJAG00000004364	-	99	76.852	ENSIPUG00000008936	lsm12a	99	75.258	Ictalurus_punctatus
ENSJJAG00000004364	-	100	84.545	ENSIPUG00000014800	lsm12	100	84.184	Ictalurus_punctatus
ENSJJAG00000004364	-	100	99.270	ENSSTOG00000007403	LSM12	100	99.270	Ictidomys_tridecemlineatus
ENSJJAG00000004364	-	86	85.714	ENSKMAG00000007704	lsm12b	57	85.714	Kryptolebias_marmoratus
ENSJJAG00000004364	-	100	85.455	ENSLBEG00000027999	lsm12b	100	84.694	Labrus_bergylta
ENSJJAG00000004364	-	99	90.000	ENSLACG00000015981	LSM12	99	89.119	Latimeria_chalumnae
ENSJJAG00000004364	-	100	85.586	ENSLOCG00000013079	lsm12b	99	82.653	Lepisosteus_oculatus
ENSJJAG00000004364	-	100	98.974	ENSLAFG00000005202	LSM12	100	98.974	Loxodonta_africana
ENSJJAG00000004364	-	100	99.270	ENSMFAG00000031376	LSM12	100	99.270	Macaca_fascicularis
ENSJJAG00000004364	-	100	99.270	ENSMMUG00000006804	LSM12	100	99.270	Macaca_mulatta
ENSJJAG00000004364	-	100	66.423	ENSMMUG00000038408	-	100	85.057	Macaca_mulatta
ENSJJAG00000004364	-	100	67.153	ENSMMUG00000042106	-	100	85.057	Macaca_mulatta
ENSJJAG00000004364	-	100	99.270	ENSMNEG00000030594	-	100	99.270	Macaca_nemestrina
ENSJJAG00000004364	-	100	99.270	ENSMLEG00000039934	LSM12	100	99.270	Mandrillus_leucophaeus
ENSJJAG00000004364	-	100	84.685	ENSMAMG00000004279	lsm12b	100	84.184	Mastacembelus_armatus
ENSJJAG00000004364	-	100	84.545	ENSMZEG00005005754	lsm12b	100	83.673	Maylandia_zebra
ENSJJAG00000004364	-	100	98.540	ENSMICG00000037219	LSM12	100	98.540	Microcebus_murinus
ENSJJAG00000004364	-	100	83.077	ENSMOCG00000017015	-	86	83.077	Microtus_ochrogaster
ENSJJAG00000004364	-	100	99.270	ENSMOCG00000019878	-	100	99.270	Microtus_ochrogaster
ENSJJAG00000004364	-	100	85.455	ENSMMOG00000020848	lsm12b	100	84.184	Mola_mola
ENSJJAG00000004364	-	100	85.455	ENSMALG00000007578	lsm12b	100	84.184	Monopterus_albus
ENSJJAG00000004364	-	100	98.540	MGP_CAROLIEiJ_G0017241	Lsm12	100	98.540	Mus_caroli
ENSJJAG00000004364	-	100	99.270	ENSMUSG00000020922	Lsm12	100	99.270	Mus_musculus
ENSJJAG00000004364	-	100	99.270	MGP_PahariEiJ_G0018371	Lsm12	100	99.270	Mus_pahari
ENSJJAG00000004364	-	100	99.074	MGP_SPRETEiJ_G0018084	Lsm12	99	100.000	Mus_spretus
ENSJJAG00000004364	-	100	98.462	ENSMLUG00000006391	LSM12	100	98.462	Myotis_lucifugus
ENSJJAG00000004364	-	100	99.270	ENSNGAG00000001870	Lsm12	100	99.270	Nannospalax_galili
ENSJJAG00000004364	-	100	66.337	ENSNGAG00000015429	-	100	66.337	Nannospalax_galili
ENSJJAG00000004364	-	100	84.545	ENSNBRG00000006266	lsm12b	100	83.673	Neolamprologus_brichardi
ENSJJAG00000004364	-	100	99.270	ENSNLEG00000005580	-	100	99.270	Nomascus_leucogenys
ENSJJAG00000004364	-	85	97.576	ENSMEUG00000007501	-	100	97.576	Notamacropus_eugenii
ENSJJAG00000004364	-	100	98.974	ENSOPRG00000008552	LSM12	100	98.974	Ochotona_princeps
ENSJJAG00000004364	-	100	87.692	ENSODEG00000007886	-	74	87.692	Octodon_degus
ENSJJAG00000004364	-	100	97.436	ENSODEG00000017998	-	100	97.436	Octodon_degus
ENSJJAG00000004364	-	100	84.545	ENSONIG00000007933	lsm12b	100	83.673	Oreochromis_niloticus
ENSJJAG00000004364	-	54	95.946	ENSOANG00000031724	-	100	90.123	Ornithorhynchus_anatinus
ENSJJAG00000004364	-	99	93.299	ENSOCUG00000021254	-	100	93.299	Oryctolagus_cuniculus
ENSJJAG00000004364	-	99	92.727	ENSOCUG00000027889	-	100	92.268	Oryctolagus_cuniculus
ENSJJAG00000004364	-	100	99.083	ENSOCUG00000008566	-	100	96.970	Oryctolagus_cuniculus
ENSJJAG00000004364	-	99	92.268	ENSOCUG00000024823	-	100	92.268	Oryctolagus_cuniculus
ENSJJAG00000004364	-	100	84.184	ENSORLG00000011310	lsm12b	100	84.184	Oryzias_latipes
ENSJJAG00000004364	-	100	84.184	ENSORLG00020002060	lsm12b	92	84.184	Oryzias_latipes_hni
ENSJJAG00000004364	-	100	84.184	ENSORLG00015001647	lsm12b	92	84.184	Oryzias_latipes_hsok
ENSJJAG00000004364	-	100	84.545	ENSOMEG00000006184	lsm12b	92	84.184	Oryzias_melastigma
ENSJJAG00000004364	-	100	98.462	ENSOGAG00000010489	LSM12	100	98.462	Otolemur_garnettii
ENSJJAG00000004364	-	100	97.297	ENSOARG00000006589	LSM12	100	95.522	Ovis_aries
ENSJJAG00000004364	-	100	91.549	ENSPPAG00000034974	-	92	100.000	Pan_paniscus
ENSJJAG00000004364	-	100	98.974	ENSPPRG00000023420	LSM12	100	98.974	Panthera_pardus
ENSJJAG00000004364	-	81	97.297	ENSPTIG00000012704	-	82	98.693	Panthera_tigris_altaica
ENSJJAG00000004364	-	100	97.810	ENSPTIG00000014850	-	100	97.810	Panthera_tigris_altaica
ENSJJAG00000004364	-	100	99.270	ENSPTRG00000009261	LSM12	100	99.270	Pan_troglodytes
ENSJJAG00000004364	-	100	99.270	ENSPANG00000021315	-	100	99.270	Papio_anubis
ENSJJAG00000004364	-	99	76.804	ENSPKIG00000017932	-	99	76.804	Paramormyrops_kingsleyae
ENSJJAG00000004364	-	100	85.586	ENSPKIG00000021058	lsm12b	100	85.204	Paramormyrops_kingsleyae
ENSJJAG00000004364	-	100	84.545	ENSPMGG00000021344	lsm12b	100	83.673	Periophthalmus_magnuspinnatus
ENSJJAG00000004364	-	100	99.270	ENSPEMG00000012199	Lsm12	100	99.270	Peromyscus_maniculatus_bairdii
ENSJJAG00000004364	-	88	66.279	ENSPMAG00000005461	lsm12a	99	66.279	Petromyzon_marinus
ENSJJAG00000004364	-	100	95.897	ENSPCIG00000020244	LSM12	100	95.897	Phascolarctos_cinereus
ENSJJAG00000004364	-	100	83.784	ENSPFOG00000015930	lsm12b	100	82.143	Poecilia_formosa
ENSJJAG00000004364	-	100	83.784	ENSPLAG00000021089	lsm12b	100	82.143	Poecilia_latipinna
ENSJJAG00000004364	-	100	83.784	ENSPMEG00000012961	lsm12b	100	82.143	Poecilia_mexicana
ENSJJAG00000004364	-	88	84.211	ENSPREG00000010236	lsm12b	95	84.211	Poecilia_reticulata
ENSJJAG00000004364	-	100	98.974	ENSPPYG00000008344	LSM12	100	98.974	Pongo_abelii
ENSJJAG00000004364	-	82	98.742	ENSPCAG00000008790	LSM12	100	98.742	Procavia_capensis
ENSJJAG00000004364	-	100	99.270	ENSPCOG00000027951	LSM12	100	99.270	Propithecus_coquereli
ENSJJAG00000004364	-	100	98.462	ENSPVAG00000013706	LSM12	100	98.462	Pteropus_vampyrus
ENSJJAG00000004364	-	100	84.545	ENSPNYG00000003386	lsm12b	100	83.673	Pundamilia_nyererei
ENSJJAG00000004364	-	100	83.636	ENSPNAG00000004186	lsm12b	100	82.143	Pygocentrus_nattereri
ENSJJAG00000004364	-	100	81.081	ENSPNAG00000018435	lsm12a	100	76.531	Pygocentrus_nattereri
ENSJJAG00000004364	-	100	98.974	ENSRNOG00000020894	Lsm12	100	98.974	Rattus_norvegicus
ENSJJAG00000004364	-	100	99.270	ENSRBIG00000027910	LSM12	100	99.270	Rhinopithecus_bieti
ENSJJAG00000004364	-	100	82.482	ENSRROG00000000537	-	100	82.482	Rhinopithecus_roxellana
ENSJJAG00000004364	-	100	99.270	ENSRROG00000045530	-	100	99.270	Rhinopithecus_roxellana
ENSJJAG00000004364	-	77	33.051	YHR121W	-	61	33.051	Saccharomyces_cerevisiae
ENSJJAG00000004364	-	100	99.270	ENSSBOG00000025310	LSM12	100	99.270	Saimiri_boliviensis_boliviensis
ENSJJAG00000004364	-	81	93.694	ENSSHAG00000014914	LSM12	100	93.038	Sarcophilus_harrisii
ENSJJAG00000004364	-	100	86.364	ENSSFOG00015009612	lsm12	100	85.204	Scleropages_formosus
ENSJJAG00000004364	-	100	82.883	ENSSFOG00015020392	lsm12a	100	82.143	Scleropages_formosus
ENSJJAG00000004364	-	100	85.455	ENSSMAG00000008089	lsm12b	100	84.184	Scophthalmus_maximus
ENSJJAG00000004364	-	100	86.364	ENSSDUG00000012711	lsm12b	100	85.204	Seriola_dumerili
ENSJJAG00000004364	-	100	86.364	ENSSLDG00000007404	lsm12b	100	85.204	Seriola_lalandi_dorsalis
ENSJJAG00000004364	-	81	97.297	ENSSARG00000005537	LSM12	100	98.693	Sorex_araneus
ENSJJAG00000004364	-	99	93.782	ENSSPUG00000011984	LSM12	99	93.782	Sphenodon_punctatus
ENSJJAG00000004364	-	100	85.455	ENSSPAG00000017058	lsm12b	100	84.694	Stegastes_partitus
ENSJJAG00000004364	-	100	98.974	ENSSSCG00000032394	LSM12	100	98.974	Sus_scrofa
ENSJJAG00000004364	-	100	83.636	ENSTRUG00000007121	lsm12b	100	83.163	Takifugu_rubripes
ENSJJAG00000004364	-	100	83.673	ENSTNIG00000014436	lsm12b	100	83.673	Tetraodon_nigroviridis
ENSJJAG00000004364	-	100	98.974	ENSTBEG00000012523	-	100	98.974	Tupaia_belangeri
ENSJJAG00000004364	-	100	95.897	ENSTBEG00000012392	-	100	95.897	Tupaia_belangeri
ENSJJAG00000004364	-	100	98.974	ENSTTRG00000010433	LSM12	100	98.974	Tursiops_truncatus
ENSJJAG00000004364	-	100	98.974	ENSUAMG00000006313	LSM12	100	98.974	Ursus_americanus
ENSJJAG00000004364	-	81	97.297	ENSUMAG00000012987	LSM12	90	95.570	Ursus_maritimus
ENSJJAG00000004364	-	100	93.333	ENSVPAG00000011145	LSM12	100	93.333	Vicugna_pacos
ENSJJAG00000004364	-	100	98.974	ENSVVUG00000017581	LSM12	100	98.974	Vulpes_vulpes
ENSJJAG00000004364	-	80	83.486	ENSXETG00000003371	lsm12	77	65.000	Xenopus_tropicalis
ENSJJAG00000004364	-	100	84.545	ENSXCOG00000003994	lsm12b	100	83.163	Xiphophorus_couchianus
ENSJJAG00000004364	-	100	84.545	ENSXMAG00000020950	lsm12b	100	83.163	Xiphophorus_maculatus