EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSJJAG00000009021 (Gene tree)
Gene ID: 101607638
Gene Symbol: Safb
Alias: 3110021E02Rik|5330423C17Rik|SAFB1
Full Name: scaffold attachment factor B
Gene Type: protein_coding
Species: Jaculus_jaculus
Status: putative
Strand: Plus strand
Length: 29704 bases
Position: chrJH725451.1:37044912-37074615
Accession: 101607638
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSJJAP00000004410	RRM_5	PF13893.6	9.9e-07	1	1
ENSJJAP00000004400	RRM_5	PF13893.6	1e-06	1	1
ENSJJAP00000004410	RRM_1	PF00076.22	3.2e-13	1	1
ENSJJAP00000004400	RRM_1	PF00076.22	3.3e-13	1	1
ENSJJAP00000004400	SAP	PF02037.27	7.7e-11	1	1
ENSJJAP00000004410	SAP	PF02037.27	4.4e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSJJAT00000010316	-	2808	XM_004654983	ENSJJAP00000004400	935 (aa)	XP_004655040	UPI0003332AFF
ENSJJAT00000010343	-	2700	-	ENSJJAP00000004410	899 (aa)	-	-

Gene Model

Click here to download ENSJJAG00000009021's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSJJAG00000009021's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSJJAG00000009021	Safb	100	85.987	ENSG00000160633	SAFB	100	85.547	Homo_sapiens
ENSJJAG00000009021	Safb	100	84.894	ENSAMEG00000012254	SAFB	100	84.681	Ailuropoda_melanoleuca
ENSJJAG00000009021	Safb	93	43.564	ENSAOCG00000006308	safb	67	41.876	Amphiprion_ocellaris
ENSJJAG00000009021	Safb	90	44.671	ENSAPEG00000023342	safb	64	42.044	Amphiprion_percula
ENSJJAG00000009021	Safb	94	62.138	ENSAPLG00000005780	-	100	61.616	Anas_platyrhynchos
ENSJJAG00000009021	Safb	90	60.764	ENSAPLG00000006355	-	99	60.805	Anas_platyrhynchos
ENSJJAG00000009021	Safb	100	85.122	ENSANAG00000028821	SAFB	100	84.697	Aotus_nancymaae
ENSJJAG00000009021	Safb	91	44.470	ENSAMXG00000018154	safb	64	39.315	Astyanax_mexicanus
ENSJJAG00000009021	Safb	98	82.225	ENSBTAG00000007875	SAFB	100	81.296	Bos_taurus
ENSJJAG00000009021	Safb	86	87.387	ENSCJAG00000017081	SAFB	100	91.264	Callithrix_jacchus
ENSJJAG00000009021	Safb	100	85.441	ENSCAFG00000018803	SAFB	87	86.079	Canis_familiaris
ENSJJAG00000009021	Safb	100	85.441	ENSCAFG00020018943	SAFB	100	86.079	Canis_lupus_dingo
ENSJJAG00000009021	Safb	98	81.461	ENSCHIG00000007262	SAFB	98	82.710	Capra_hircus
ENSJJAG00000009021	Safb	60	76.164	ENSTSYG00000001851	-	100	73.394	Carlito_syrichta
ENSJJAG00000009021	Safb	100	86.984	ENSCPOG00000026322	SAFB	100	87.302	Cavia_porcellus
ENSJJAG00000009021	Safb	100	85.563	ENSCCAG00000020193	SAFB	100	84.607	Cebus_capucinus
ENSJJAG00000009021	Safb	100	85.654	ENSCATG00000029994	SAFB	100	85.441	Cercocebus_atys
ENSJJAG00000009021	Safb	100	88.254	ENSCLAG00000007734	SAFB	100	87.831	Chinchilla_lanigera
ENSJJAG00000009021	Safb	100	85.547	ENSCSAG00000009949	SAFB	100	85.335	Chlorocebus_sabaeus
ENSJJAG00000009021	Safb	87	97.619	ENSCHOG00000003208	SAFB	93	97.619	Choloepus_hoffmanni
ENSJJAG00000009021	Safb	92	61.327	ENSCPBG00000010928	-	99	60.252	Chrysemys_picta_bellii
ENSJJAG00000009021	Safb	92	58.370	ENSCPBG00000010936	-	63	55.102	Chrysemys_picta_bellii
ENSJJAG00000009021	Safb	96	94.030	ENSCANG00000004774	-	99	94.030	Colobus_angolensis_palliatus
ENSJJAG00000009021	Safb	98	80.765	ENSCANG00000019754	-	100	79.872	Colobus_angolensis_palliatus
ENSJJAG00000009021	Safb	98	88.587	ENSCGRG00001002254	Safb	100	87.500	Cricetulus_griseus_chok1gshd
ENSJJAG00000009021	Safb	91	85.991	ENSCGRG00000011529	Safb	96	85.194	Cricetulus_griseus_crigri
ENSJJAG00000009021	Safb	94	39.835	ENSCSEG00000019870	safb	69	37.542	Cynoglossus_semilaevis
ENSJJAG00000009021	Safb	91	42.582	ENSDARG00000020467	safb	63	58.647	Danio_rerio
ENSJJAG00000009021	Safb	98	84.406	ENSDNOG00000015746	SAFB	95	81.711	Dasypus_novemcinctus
ENSJJAG00000009021	Safb	100	81.224	ENSDORG00000016200	Safb	100	80.526	Dipodomys_ordii
ENSJJAG00000009021	Safb	81	85.507	ENSETEG00000018679	SAFB	85	85.507	Echinops_telfairi
ENSJJAG00000009021	Safb	100	83.192	ENSEASG00005023019	SAFB	100	82.241	Equus_asinus_asinus
ENSJJAG00000009021	Safb	98	85.278	ENSECAG00000018659	SAFB	89	84.591	Equus_caballus
ENSJJAG00000009021	Safb	96	41.737	ENSELUG00000022327	safb	60	54.930	Esox_lucius
ENSJJAG00000009021	Safb	100	85.745	ENSFCAG00000011835	SAFB	100	85.426	Felis_catus
ENSJJAG00000009021	Safb	92	55.568	ENSFALG00000013881	-	64	56.048	Ficedula_albicollis
ENSJJAG00000009021	Safb	100	62.854	ENSFALG00000013882	-	92	62.185	Ficedula_albicollis
ENSJJAG00000009021	Safb	100	80.500	ENSFDAG00000020306	SAFB	99	84.062	Fukomys_damarensis
ENSJJAG00000009021	Safb	61	46.631	ENSGMOG00000014280	safb	63	37.713	Gadus_morhua
ENSJJAG00000009021	Safb	100	57.932	ENSGALG00000001948	-	100	59.394	Gallus_gallus
ENSJJAG00000009021	Safb	100	62.959	ENSGALG00000013365	-	100	62.290	Gallus_gallus
ENSJJAG00000009021	Safb	96	60.127	ENSGAGG00000008424	-	100	58.122	Gopherus_agassizii
ENSJJAG00000009021	Safb	76	56.609	ENSGAGG00000017702	-	94	57.740	Gopherus_agassizii
ENSJJAG00000009021	Safb	100	85.760	ENSGGOG00000015109	SAFB	100	85.335	Gorilla_gorilla
ENSJJAG00000009021	Safb	100	88.323	ENSHGLG00000015883	SAFB	100	87.898	Heterocephalus_glaber_female
ENSJJAG00000009021	Safb	100	70.992	ENSHGLG00100004228	SAFB	100	93.103	Heterocephalus_glaber_male
ENSJJAG00000009021	Safb	92	36.730	ENSHCOG00000001705	safb	64	37.229	Hippocampus_comes
ENSJJAG00000009021	Safb	94	88.826	ENSSTOG00000002783	SAFB	100	88.826	Ictidomys_tridecemlineatus
ENSJJAG00000009021	Safb	96	40.486	ENSLBEG00000006015	safb	63	41.408	Labrus_bergylta
ENSJJAG00000009021	Safb	66	48.287	ENSLACG00000018090	SAFB	66	50.314	Latimeria_chalumnae
ENSJJAG00000009021	Safb	97	45.588	ENSLOCG00000003613	safb	74	44.978	Lepisosteus_oculatus
ENSJJAG00000009021	Safb	99	83.369	ENSLAFG00000003840	SAFB	100	82.196	Loxodonta_africana
ENSJJAG00000009021	Safb	100	85.669	ENSMFAG00000003885	SAFB	100	84.926	Macaca_fascicularis
ENSJJAG00000009021	Safb	100	85.654	ENSMMUG00000017970	SAFB	100	85.441	Macaca_mulatta
ENSJJAG00000009021	Safb	100	82.272	ENSMNEG00000035637	SAFB	100	81.250	Macaca_nemestrina
ENSJJAG00000009021	Safb	100	80.317	ENSMLEG00000038637	SAFB	100	78.953	Mandrillus_leucophaeus
ENSJJAG00000009021	Safb	97	61.304	ENSMGAG00000001101	-	100	60.936	Meleagris_gallopavo
ENSJJAG00000009021	Safb	89	57.674	ENSMGAG00000001051	-	100	58.140	Meleagris_gallopavo
ENSJJAG00000009021	Safb	54	92.464	ENSMAUG00000005013	Safb	100	93.827	Mesocricetus_auratus
ENSJJAG00000009021	Safb	85	72.243	ENSMICG00000046795	-	98	86.170	Microcebus_murinus
ENSJJAG00000009021	Safb	100	82.272	ENSMICG00000008739	-	100	81.210	Microcebus_murinus
ENSJJAG00000009021	Safb	98	88.913	ENSMOCG00000014040	Safb	100	87.818	Microtus_ochrogaster
ENSJJAG00000009021	Safb	100	70.924	ENSMODG00000001236	SAFB	100	70.924	Monodelphis_domestica
ENSJJAG00000009021	Safb	100	87.949	MGP_CAROLIEiJ_G0021780	Safb	100	88.055	Mus_caroli
ENSJJAG00000009021	Safb	100	87.949	ENSMUSG00000071054	Safb	100	88.055	Mus_musculus
ENSJJAG00000009021	Safb	98	88.299	MGP_PahariEiJ_G0020769	Safb	100	87.540	Mus_pahari
ENSJJAG00000009021	Safb	100	85.122	ENSMPUG00000006123	SAFB	94	86.079	Mustela_putorius_furo
ENSJJAG00000009021	Safb	100	84.910	ENSMLUG00000001081	SAFB	100	84.591	Myotis_lucifugus
ENSJJAG00000009021	Safb	100	85.759	ENSNGAG00000019882	Safb	100	85.759	Nannospalax_galili
ENSJJAG00000009021	Safb	96	85.604	ENSNLEG00000013551	SAFB	100	85.161	Nomascus_leucogenys
ENSJJAG00000009021	Safb	89	78.802	ENSOPRG00000011561	-	100	78.828	Ochotona_princeps
ENSJJAG00000009021	Safb	100	88.571	ENSODEG00000014838	SAFB	100	88.360	Octodon_degus
ENSJJAG00000009021	Safb	91	77.518	ENSOCUG00000014628	SAFB	63	77.331	Oryctolagus_cuniculus
ENSJJAG00000009021	Safb	100	80.973	ENSOGAG00000027769	SAFB	100	79.894	Otolemur_garnettii
ENSJJAG00000009021	Safb	98	78.408	ENSOARG00000007662	-	100	75.664	Ovis_aries
ENSJJAG00000009021	Safb	79	75.068	ENSOARG00000007856	-	100	73.984	Ovis_aries
ENSJJAG00000009021	Safb	100	85.881	ENSPPAG00000035129	SAFB	100	84.926	Pan_paniscus
ENSJJAG00000009021	Safb	100	85.745	ENSPPRG00000017197	SAFB	100	85.426	Panthera_pardus
ENSJJAG00000009021	Safb	100	85.881	ENSPTRG00000010335	SAFB	100	84.926	Pan_troglodytes
ENSJJAG00000009021	Safb	100	85.244	ENSPANG00000007770	SAFB	100	85.032	Papio_anubis
ENSJJAG00000009021	Safb	93	41.542	ENSPKIG00000009902	safb	66	40.315	Paramormyrops_kingsleyae
ENSJJAG00000009021	Safb	100	59.897	ENSPSIG00000011679	-	100	60.330	Pelodiscus_sinensis
ENSJJAG00000009021	Safb	99	59.175	ENSPSIG00000009367	-	66	56.037	Pelodiscus_sinensis
ENSJJAG00000009021	Safb	98	89.239	ENSPEMG00000020428	Safb	100	88.136	Peromyscus_maniculatus_bairdii
ENSJJAG00000009021	Safb	60	78.755	ENSPCIG00000009504	-	99	79.760	Phascolarctos_cinereus
ENSJJAG00000009021	Safb	100	85.866	ENSPPYG00000009428	SAFB	100	85.441	Pongo_abelii
ENSJJAG00000009021	Safb	100	79.277	ENSPCAG00000006475	SAFB	100	78.852	Procavia_capensis
ENSJJAG00000009021	Safb	100	78.730	ENSPCOG00000014090	SAFB	100	76.119	Propithecus_coquereli
ENSJJAG00000009021	Safb	98	78.299	ENSPVAG00000004913	SAFB	100	78.002	Pteropus_vampyrus
ENSJJAG00000009021	Safb	94	45.038	ENSPNAG00000021838	safb	64	43.891	Pygocentrus_nattereri
ENSJJAG00000009021	Safb	100	86.934	ENSRNOG00000050543	Safb	100	86.828	Rattus_norvegicus
ENSJJAG00000009021	Safb	100	73.941	ENSRBIG00000042509	SAFB	88	88.172	Rhinopithecus_bieti
ENSJJAG00000009021	Safb	100	85.775	ENSRROG00000029278	SAFB	100	84.820	Rhinopithecus_roxellana
ENSJJAG00000009021	Safb	100	85.547	ENSSBOG00000026291	SAFB	100	85.122	Saimiri_boliviensis_boliviensis
ENSJJAG00000009021	Safb	96	43.816	ENSSFOG00015008156	safb	65	45.512	Scleropages_formosus
ENSJJAG00000009021	Safb	96	39.471	ENSSMAG00000009316	safb	64	41.987	Scophthalmus_maximus
ENSJJAG00000009021	Safb	94	80.341	ENSSARG00000010475	SAFB	100	80.114	Sorex_araneus
ENSJJAG00000009021	Safb	87	55.664	ENSSPUG00000009747	-	99	53.644	Sphenodon_punctatus
ENSJJAG00000009021	Safb	54	51.763	ENSSPUG00000009820	-	99	56.364	Sphenodon_punctatus
ENSJJAG00000009021	Safb	77	49.710	ENSSPAG00000015682	safb	56	56.967	Stegastes_partitus
ENSJJAG00000009021	Safb	100	83.613	ENSSSCG00000013522	SAFB	99	84.519	Sus_scrofa
ENSJJAG00000009021	Safb	93	59.534	ENSTGUG00000000489	-	100	58.509	Taeniopygia_guttata
ENSJJAG00000009021	Safb	96	61.900	ENSTGUG00000000502	-	100	61.681	Taeniopygia_guttata
ENSJJAG00000009021	Safb	75	87.121	ENSTBEG00000013124	-	67	91.176	Tupaia_belangeri
ENSJJAG00000009021	Safb	94	84.127	ENSTTRG00000013588	SAFB	92	90.476	Tursiops_truncatus
ENSJJAG00000009021	Safb	84	81.950	ENSUAMG00000024543	SAFB	99	84.319	Ursus_americanus
ENSJJAG00000009021	Safb	81	92.199	ENSUMAG00000009734	SAFB	88	92.199	Ursus_maritimus
ENSJJAG00000009021	Safb	78	78.897	ENSVPAG00000012043	SAFB	78	92.308	Vicugna_pacos
ENSJJAG00000009021	Safb	100	85.441	ENSVVUG00000013720	SAFB	87	86.079	Vulpes_vulpes
ENSJJAG00000009021	Safb	66	48.882	ENSXETG00000008755	safb	98	50.562	Xenopus_tropicalis