EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSJJAG00000010863 (Gene tree)
Gene ID: 101597419
Gene Symbol: Xrn1
Alias: Dhm2|mXrn1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Jaculus_jaculus
Status: putative
Strand: Minus strand
Length: 118548 bases
Position: chrJH725499.1:3663550-3782097
Accession: 101597419
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSJJAP00000006237	XRN_N	PF03159.18	2.6e-86	1	1
ENSJJAP00000006226	XRN_N	PF03159.18	3.1e-86	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSJJAT00000012628	-	2832	-	ENSJJAP00000006237	943 (aa)	-	-
ENSJJAT00000012616	-	5145	XM_012949900	ENSJJAP00000006226	1714 (aa)	XP_012805354	-

Gene Model

Click here to download ENSJJAG00000010863's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSJJAG00000010863's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSJJAG00000010863	Xrn1	60	39.308	ENSJJAG00000022128	Xrn2	66	38.522

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSJJAG00000010863	Xrn1	99	93.548	ENSG00000114127	XRN1	100	98.788	Homo_sapiens
ENSJJAG00000010863	Xrn1	99	76.661	ENSAPOG00000000622	xrn1	93	76.923	Acanthochromis_polyacanthus
ENSJJAG00000010863	Xrn1	99	93.769	ENSAMEG00000012538	XRN1	98	88.225	Ailuropoda_melanoleuca
ENSJJAG00000010863	Xrn1	99	77.558	ENSACIG00000001057	xrn1	97	72.282	Amphilophus_citrinellus
ENSJJAG00000010863	Xrn1	99	77.778	ENSAOCG00000014097	xrn1	96	70.742	Amphiprion_ocellaris
ENSJJAG00000010863	Xrn1	99	77.778	ENSAPEG00000006620	xrn1	89	72.108	Amphiprion_percula
ENSJJAG00000010863	Xrn1	99	75.124	ENSATEG00000009752	xrn1	97	69.837	Anabas_testudineus
ENSJJAG00000010863	Xrn1	99	85.968	ENSAPLG00000004905	XRN1	99	74.811	Anas_platyrhynchos
ENSJJAG00000010863	Xrn1	99	84.793	ENSACAG00000004985	XRN1	99	70.826	Anolis_carolinensis
ENSJJAG00000010863	Xrn1	99	94.032	ENSANAG00000029013	XRN1	97	93.767	Aotus_nancymaae
ENSJJAG00000010863	Xrn1	99	76.403	ENSACLG00000004806	xrn1	98	59.689	Astatotilapia_calliptera
ENSJJAG00000010863	Xrn1	99	72.168	ENSAMXG00000019370	xrn1	95	70.737	Astyanax_mexicanus
ENSJJAG00000010863	Xrn1	99	93.713	ENSBTAG00000011524	XRN1	98	85.233	Bos_taurus
ENSJJAG00000010863	Xrn1	93	51.719	WBGene00012730	xrn-1	78	38.863	Caenorhabditis_elegans
ENSJJAG00000010863	Xrn1	99	93.710	ENSCJAG00000001872	XRN1	98	86.922	Callithrix_jacchus
ENSJJAG00000010863	Xrn1	99	94.611	ENSCAFG00000007783	XRN1	98	87.998	Canis_familiaris
ENSJJAG00000010863	Xrn1	99	94.611	ENSCAFG00020009120	XRN1	97	92.706	Canis_lupus_dingo
ENSJJAG00000010863	Xrn1	99	93.713	ENSCHIG00000019192	XRN1	98	87.419	Capra_hircus
ENSJJAG00000010863	Xrn1	99	94.311	ENSTSYG00000002705	XRN1	98	86.827	Carlito_syrichta
ENSJJAG00000010863	Xrn1	100	72.698	ENSCAPG00000004604	-	99	75.249	Cavia_aperea
ENSJJAG00000010863	Xrn1	100	94.915	ENSCCAG00000034800	XRN1	97	94.915	Cebus_capucinus
ENSJJAG00000010863	Xrn1	99	94.194	ENSCATG00000041794	XRN1	98	87.119	Cercocebus_atys
ENSJJAG00000010863	Xrn1	100	93.962	ENSCLAG00000001451	XRN1	97	93.962	Chinchilla_lanigera
ENSJJAG00000010863	Xrn1	99	94.355	ENSCSAG00000011265	XRN1	98	86.636	Chlorocebus_sabaeus
ENSJJAG00000010863	Xrn1	57	98.701	ENSCHOG00000013961	-	59	96.104	Choloepus_hoffmanni
ENSJJAG00000010863	Xrn1	50	56.838	ENSCING00000001334	-	89	68.805	Ciona_intestinalis
ENSJJAG00000010863	Xrn1	83	59.034	ENSCSAVG00000008584	-	96	43.384	Ciona_savignyi
ENSJJAG00000010863	Xrn1	100	95.339	ENSCANG00000037495	XRN1	97	95.339	Colobus_angolensis_palliatus
ENSJJAG00000010863	Xrn1	100	95.021	ENSCGRG00001019411	Xrn1	97	95.021	Cricetulus_griseus_chok1gshd
ENSJJAG00000010863	Xrn1	100	95.021	ENSCGRG00000012464	Xrn1	97	95.021	Cricetulus_griseus_crigri
ENSJJAG00000010863	Xrn1	99	77.483	ENSCSEG00000021285	xrn1	96	77.495	Cynoglossus_semilaevis
ENSJJAG00000010863	Xrn1	99	68.072	ENSCVAG00000013089	xrn1	97	71.661	Cyprinodon_variegatus
ENSJJAG00000010863	Xrn1	99	79.475	ENSDARG00000091652	xrn1	98	80.084	Danio_rerio
ENSJJAG00000010863	Xrn1	99	95.861	ENSDORG00000013833	Xrn1	99	84.789	Dipodomys_ordii
ENSJJAG00000010863	Xrn1	93	53.427	FBgn0020261	pcm	72	39.672	Drosophila_melanogaster
ENSJJAG00000010863	Xrn1	86	99.099	ENSETEG00000003978	XRN1	88	98.387	Echinops_telfairi
ENSJJAG00000010863	Xrn1	100	94.915	ENSEASG00005002687	XRN1	97	94.915	Equus_asinus_asinus
ENSJJAG00000010863	Xrn1	99	94.032	ENSECAG00000008301	XRN1	98	85.357	Equus_caballus
ENSJJAG00000010863	Xrn1	84	95.421	ENSEEUG00000011323	XRN1	91	82.046	Erinaceus_europaeus
ENSJJAG00000010863	Xrn1	99	78.218	ENSELUG00000000169	xrn1	98	59.807	Esox_lucius
ENSJJAG00000010863	Xrn1	99	92.515	ENSFCAG00000027589	XRN1	93	94.419	Felis_catus
ENSJJAG00000010863	Xrn1	99	86.755	ENSFALG00000007021	XRN1	99	73.235	Ficedula_albicollis
ENSJJAG00000010863	Xrn1	100	93.856	ENSFDAG00000020494	XRN1	97	93.856	Fukomys_damarensis
ENSJJAG00000010863	Xrn1	51	70.625	ENSFHEG00000017356	-	98	70.208	Fundulus_heteroclitus
ENSJJAG00000010863	Xrn1	99	74.834	ENSGMOG00000006396	xrn1	81	67.181	Gadus_morhua
ENSJJAG00000010863	Xrn1	99	87.086	ENSGALG00000002706	XRN1	99	73.132	Gallus_gallus
ENSJJAG00000010863	Xrn1	99	75.534	ENSGACG00000014328	xrn1	98	59.422	Gasterosteus_aculeatus
ENSJJAG00000010863	Xrn1	99	86.942	ENSGAGG00000017535	XRN1	98	77.036	Gopherus_agassizii
ENSJJAG00000010863	Xrn1	99	93.548	ENSGGOG00000008047	XRN1	98	86.710	Gorilla_gorilla
ENSJJAG00000010863	Xrn1	99	74.257	ENSHBUG00000005908	xrn1	98	72.746	Haplochromis_burtoni
ENSJJAG00000010863	Xrn1	99	95.050	ENSHGLG00000014476	XRN1	97	94.274	Heterocephalus_glaber_female
ENSJJAG00000010863	Xrn1	99	95.050	ENSHGLG00100015130	XRN1	97	94.274	Heterocephalus_glaber_male
ENSJJAG00000010863	Xrn1	99	75.684	ENSHCOG00000014062	xrn1	93	69.427	Hippocampus_comes
ENSJJAG00000010863	Xrn1	99	77.368	ENSIPUG00000015229	xrn1	98	61.552	Ictalurus_punctatus
ENSJJAG00000010863	Xrn1	100	95.127	ENSSTOG00000013552	XRN1	97	95.127	Ictidomys_tridecemlineatus
ENSJJAG00000010863	Xrn1	99	78.000	ENSKMAG00000021356	xrn1	94	76.744	Kryptolebias_marmoratus
ENSJJAG00000010863	Xrn1	99	77.446	ENSLBEG00000018656	xrn1	74	94.872	Labrus_bergylta
ENSJJAG00000010863	Xrn1	99	83.140	ENSLACG00000009020	XRN1	99	68.519	Latimeria_chalumnae
ENSJJAG00000010863	Xrn1	99	80.757	ENSLOCG00000007944	xrn1	99	62.422	Lepisosteus_oculatus
ENSJJAG00000010863	Xrn1	99	93.387	ENSLAFG00000015426	XRN1	98	94.151	Loxodonta_africana
ENSJJAG00000010863	Xrn1	99	94.194	ENSMFAG00000032599	XRN1	98	87.119	Macaca_fascicularis
ENSJJAG00000010863	Xrn1	99	94.194	ENSMMUG00000014038	XRN1	98	87.119	Macaca_mulatta
ENSJJAG00000010863	Xrn1	99	93.871	ENSMNEG00000034217	XRN1	98	86.944	Macaca_nemestrina
ENSJJAG00000010863	Xrn1	99	75.845	ENSMAMG00000013219	xrn1	94	76.278	Mastacembelus_armatus
ENSJJAG00000010863	Xrn1	99	76.568	ENSMZEG00005015099	xrn1	98	59.689	Maylandia_zebra
ENSJJAG00000010863	Xrn1	99	84.132	ENSMGAG00000006333	XRN1	99	73.473	Meleagris_gallopavo
ENSJJAG00000010863	Xrn1	99	94.311	ENSMICG00000048948	XRN1	98	86.550	Microcebus_murinus
ENSJJAG00000010863	Xrn1	100	94.174	ENSMOCG00000008665	Xrn1	97	94.380	Microtus_ochrogaster
ENSJJAG00000010863	Xrn1	55	68.819	ENSMMOG00000020896	-	96	68.819	Mola_mola
ENSJJAG00000010863	Xrn1	99	88.623	ENSMODG00000021236	XRN1	98	76.620	Monodelphis_domestica
ENSJJAG00000010863	Xrn1	99	70.033	ENSMALG00000004098	xrn1	98	56.308	Monopterus_albus
ENSJJAG00000010863	Xrn1	99	93.849	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSJJAG00000010863	Xrn1	99	93.955	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSJJAG00000010863	Xrn1	99	94.049	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSJJAG00000010863	Xrn1	99	93.955	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSJJAG00000010863	Xrn1	99	94.311	ENSMPUG00000012040	XRN1	98	85.822	Mustela_putorius_furo
ENSJJAG00000010863	Xrn1	98	94.536	ENSMLUG00000016885	XRN1	98	85.748	Myotis_lucifugus
ENSJJAG00000010863	Xrn1	99	92.226	ENSNGAG00000023964	Xrn1	97	92.226	Nannospalax_galili
ENSJJAG00000010863	Xrn1	99	94.194	ENSNLEG00000004726	XRN1	98	87.002	Nomascus_leucogenys
ENSJJAG00000010863	Xrn1	70	98.611	ENSMEUG00000014473	-	71	97.403	Notamacropus_eugenii
ENSJJAG00000010863	Xrn1	73	94.565	ENSOPRG00000007337	-	76	81.970	Ochotona_princeps
ENSJJAG00000010863	Xrn1	99	77.025	ENSONIG00000016673	xrn1	97	64.052	Oreochromis_niloticus
ENSJJAG00000010863	Xrn1	87	86.694	ENSOANG00000006735	XRN1	100	74.314	Ornithorhynchus_anatinus
ENSJJAG00000010863	Xrn1	99	94.611	ENSOCUG00000001861	XRN1	99	87.159	Oryctolagus_cuniculus
ENSJJAG00000010863	Xrn1	99	78.512	ENSORLG00000013005	xrn1	96	71.849	Oryzias_latipes
ENSJJAG00000010863	Xrn1	99	78.512	ENSORLG00020005559	xrn1	96	71.849	Oryzias_latipes_hni
ENSJJAG00000010863	Xrn1	99	78.017	ENSORLG00015022523	xrn1	87	71.604	Oryzias_latipes_hsok
ENSJJAG00000010863	Xrn1	99	77.778	ENSOMEG00000015397	xrn1	97	72.508	Oryzias_melastigma
ENSJJAG00000010863	Xrn1	99	93.413	ENSOGAG00000000170	XRN1	98	83.730	Otolemur_garnettii
ENSJJAG00000010863	Xrn1	99	93.713	ENSOARG00000006343	XRN1	98	86.962	Ovis_aries
ENSJJAG00000010863	Xrn1	99	93.413	ENSPPAG00000010180	XRN1	98	86.467	Pan_paniscus
ENSJJAG00000010863	Xrn1	99	94.311	ENSPPRG00000007125	XRN1	98	86.659	Panthera_pardus
ENSJJAG00000010863	Xrn1	99	94.311	ENSPTIG00000021081	XRN1	98	86.600	Panthera_tigris_altaica
ENSJJAG00000010863	Xrn1	99	93.413	ENSPTRG00000015482	XRN1	98	86.526	Pan_troglodytes
ENSJJAG00000010863	Xrn1	99	94.194	ENSPANG00000010638	XRN1	98	87.002	Papio_anubis
ENSJJAG00000010863	Xrn1	99	86.469	ENSPSIG00000018050	XRN1	99	74.986	Pelodiscus_sinensis
ENSJJAG00000010863	Xrn1	99	73.673	ENSPMGG00000002648	xrn1	95	76.606	Periophthalmus_magnuspinnatus
ENSJJAG00000010863	Xrn1	100	94.703	ENSPEMG00000020610	Xrn1	97	94.703	Peromyscus_maniculatus_bairdii
ENSJJAG00000010863	Xrn1	94	56.378	ENSPMAG00000002975	xrn1	91	78.035	Petromyzon_marinus
ENSJJAG00000010863	Xrn1	99	89.222	ENSPCIG00000028735	XRN1	97	88.788	Phascolarctos_cinereus
ENSJJAG00000010863	Xrn1	99	77.049	ENSPFOG00000013932	xrn1	97	63.312	Poecilia_formosa
ENSJJAG00000010863	Xrn1	99	77.521	ENSPLAG00000021653	xrn1	97	63.514	Poecilia_latipinna
ENSJJAG00000010863	Xrn1	99	76.974	ENSPMEG00000003076	xrn1	93	63.442	Poecilia_mexicana
ENSJJAG00000010863	Xrn1	99	77.340	ENSPREG00000021147	xrn1	98	60.080	Poecilia_reticulata
ENSJJAG00000010863	Xrn1	99	94.032	ENSPPYG00000014172	XRN1	98	85.997	Pongo_abelii
ENSJJAG00000010863	Xrn1	93	94.505	ENSPCAG00000005638	XRN1	96	79.485	Procavia_capensis
ENSJJAG00000010863	Xrn1	100	95.127	ENSPCOG00000013089	XRN1	97	95.127	Propithecus_coquereli
ENSJJAG00000010863	Xrn1	99	93.072	ENSPVAG00000016265	XRN1	91	90.160	Pteropus_vampyrus
ENSJJAG00000010863	Xrn1	99	76.568	ENSPNYG00000010570	xrn1	97	70.769	Pundamilia_nyererei
ENSJJAG00000010863	Xrn1	99	75.658	ENSPNAG00000023531	xrn1	98	59.534	Pygocentrus_nattereri
ENSJJAG00000010863	Xrn1	99	93.548	ENSRNOG00000042951	Xrn1	98	86.686	Rattus_norvegicus
ENSJJAG00000010863	Xrn1	99	93.871	ENSRBIG00000041227	XRN1	98	86.358	Rhinopithecus_bieti
ENSJJAG00000010863	Xrn1	88	55.263	YGL173C	XRN1	71	54.678	Saccharomyces_cerevisiae
ENSJJAG00000010863	Xrn1	99	94.032	ENSSBOG00000029561	XRN1	98	86.417	Saimiri_boliviensis_boliviensis
ENSJJAG00000010863	Xrn1	99	88.024	ENSSHAG00000016207	XRN1	99	78.121	Sarcophilus_harrisii
ENSJJAG00000010863	Xrn1	99	77.280	ENSSFOG00015024211	xrn1	98	60.597	Scleropages_formosus
ENSJJAG00000010863	Xrn1	99	78.878	ENSSMAG00000016534	xrn1	97	71.865	Scophthalmus_maximus
ENSJJAG00000010863	Xrn1	99	78.418	ENSSDUG00000010306	xrn1	93	71.867	Seriola_dumerili
ENSJJAG00000010863	Xrn1	99	78.418	ENSSLDG00000021543	xrn1	97	71.185	Seriola_lalandi_dorsalis
ENSJJAG00000010863	Xrn1	91	90.000	ENSSARG00000007741	-	81	83.971	Sorex_araneus
ENSJJAG00000010863	Xrn1	50	85.714	ENSSPUG00000010779	-	95	85.504	Sphenodon_punctatus
ENSJJAG00000010863	Xrn1	52	76.613	ENSSPAG00000009856	-	96	76.411	Stegastes_partitus
ENSJJAG00000010863	Xrn1	99	85.484	ENSTGUG00000008498	XRN1	99	74.767	Taeniopygia_guttata
ENSJJAG00000010863	Xrn1	99	76.500	ENSTRUG00000004895	xrn1	96	77.350	Takifugu_rubripes
ENSJJAG00000010863	Xrn1	96	76.076	ENSTNIG00000017615	xrn1	98	57.398	Tetraodon_nigroviridis
ENSJJAG00000010863	Xrn1	99	86.213	ENSTBEG00000003256	XRN1	82	96.812	Tupaia_belangeri
ENSJJAG00000010863	Xrn1	99	93.675	ENSTTRG00000012914	XRN1	98	81.570	Tursiops_truncatus
ENSJJAG00000010863	Xrn1	99	94.611	ENSUAMG00000001608	XRN1	99	91.087	Ursus_americanus
ENSJJAG00000010863	Xrn1	99	94.611	ENSUMAG00000013625	XRN1	99	87.921	Ursus_maritimus
ENSJJAG00000010863	Xrn1	99	93.548	ENSVPAG00000004690	XRN1	98	82.510	Vicugna_pacos
ENSJJAG00000010863	Xrn1	99	95.228	ENSVVUG00000024461	XRN1	97	95.228	Vulpes_vulpes
ENSJJAG00000010863	Xrn1	99	82.867	ENSXETG00000000619	xrn1	90	88.184	Xenopus_tropicalis
ENSJJAG00000010863	Xrn1	99	76.949	ENSXCOG00000007917	xrn1	95	71.417	Xiphophorus_couchianus
ENSJJAG00000010863	Xrn1	99	75.622	ENSXMAG00000018320	xrn1	98	68.065	Xiphophorus_maculatus