EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSJJAG00000011800 (Gene tree)
Gene ID: 101605327
Gene Symbol: Trub1
Alias: 2610009I02Rik|9030425C13Rik
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Jaculus_jaculus
Status: putative
Strand: Minus strand
Length: 52273 bases
Position: chrJH725466.1:13321460-13373732
Accession: 101605327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSJJAP00000007380	TruB_N	PF01509.18	2.2e-51	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSJJAT00000013791	-	1023	XM_004659314	ENSJJAP00000007380	340 (aa)	XP_004659371	-

Gene Model

Click here to download ENSJJAG00000011800's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSJJAG00000011800's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSJJAG00000011800	Trub1	99	83.668	ENSG00000165832	TRUB1	99	83.954	Homo_sapiens
ENSJJAG00000011800	Trub1	72	67.347	ENSAPOG00000020565	trub1	89	67.073	Acanthochromis_polyacanthus
ENSJJAG00000011800	Trub1	88	89.701	ENSAMEG00000014931	TRUB1	99	82.621	Ailuropoda_melanoleuca
ENSJJAG00000011800	Trub1	80	58.824	ENSACIG00000003060	trub1	90	58.824	Amphilophus_citrinellus
ENSJJAG00000011800	Trub1	72	67.347	ENSAOCG00000017188	trub1	94	64.751	Amphiprion_ocellaris
ENSJJAG00000011800	Trub1	72	66.667	ENSAPEG00000015209	trub1	94	64.368	Amphiprion_percula
ENSJJAG00000011800	Trub1	71	68.050	ENSATEG00000023291	trub1	88	66.935	Anabas_testudineus
ENSJJAG00000011800	Trub1	81	74.088	ENSAPLG00000006808	TRUB1	98	74.088	Anas_platyrhynchos
ENSJJAG00000011800	Trub1	79	71.852	ENSACAG00000009282	TRUB1	97	71.852	Anolis_carolinensis
ENSJJAG00000011800	Trub1	88	92.617	ENSANAG00000022870	TRUB1	85	92.617	Aotus_nancymaae
ENSJJAG00000011800	Trub1	74	65.079	ENSACLG00000000823	trub1	91	65.079	Astatotilapia_calliptera
ENSJJAG00000011800	Trub1	79	64.925	ENSAMXG00000015845	trub1	89	64.925	Astyanax_mexicanus
ENSJJAG00000011800	Trub1	98	84.840	ENSBTAG00000012955	TRUB1	100	84.091	Bos_taurus
ENSJJAG00000011800	Trub1	99	83.429	ENSCJAG00000047815	TRUB1	85	92.642	Callithrix_jacchus
ENSJJAG00000011800	Trub1	99	83.954	ENSCAFG00000011688	TRUB1	99	84.241	Canis_familiaris
ENSJJAG00000011800	Trub1	99	84.241	ENSCAFG00020013237	TRUB1	99	84.527	Canis_lupus_dingo
ENSJJAG00000011800	Trub1	88	91.667	ENSCHIG00000020884	TRUB1	90	91.667	Capra_hircus
ENSJJAG00000011800	Trub1	99	82.000	ENSTSYG00000000446	TRUB1	99	83.143	Carlito_syrichta
ENSJJAG00000011800	Trub1	74	80.237	ENSCAPG00000017088	TRUB1	99	80.237	Cavia_aperea
ENSJJAG00000011800	Trub1	70	82.353	ENSCPOG00000030129	-	76	92.821	Cavia_porcellus
ENSJJAG00000011800	Trub1	69	81.224	ENSCPOG00000040236	-	80	92.308	Cavia_porcellus
ENSJJAG00000011800	Trub1	88	91.973	ENSCCAG00000028842	TRUB1	85	91.973	Cebus_capucinus
ENSJJAG00000011800	Trub1	99	84.241	ENSCATG00000033431	TRUB1	99	84.527	Cercocebus_atys
ENSJJAG00000011800	Trub1	69	80.816	ENSCLAG00000008664	TRUB1	80	92.821	Chinchilla_lanigera
ENSJJAG00000011800	Trub1	99	84.527	ENSCSAG00000004891	TRUB1	99	84.814	Chlorocebus_sabaeus
ENSJJAG00000011800	Trub1	99	69.942	ENSCHOG00000011931	TRUB1	84	76.689	Choloepus_hoffmanni
ENSJJAG00000011800	Trub1	80	77.491	ENSCPBG00000003051	TRUB1	93	77.491	Chrysemys_picta_bellii
ENSJJAG00000011800	Trub1	99	84.527	ENSCANG00000029445	TRUB1	99	84.814	Colobus_angolensis_palliatus
ENSJJAG00000011800	Trub1	83	78.292	ENSCGRG00001010322	-	80	78.305	Cricetulus_griseus_chok1gshd
ENSJJAG00000011800	Trub1	75	85.098	ENSCGRG00001016772	-	100	72.059	Cricetulus_griseus_chok1gshd
ENSJJAG00000011800	Trub1	83	86.477	ENSCGRG00000010806	Trub1	100	79.706	Cricetulus_griseus_crigri
ENSJJAG00000011800	Trub1	75	61.961	ENSCSEG00000011261	trub1	83	61.961	Cynoglossus_semilaevis
ENSJJAG00000011800	Trub1	72	66.939	ENSCVAG00000008791	trub1	78	65.490	Cyprinodon_variegatus
ENSJJAG00000011800	Trub1	77	66.160	ENSDARG00000053805	trub1	94	64.130	Danio_rerio
ENSJJAG00000011800	Trub1	89	85.714	ENSDNOG00000001069	TRUB1	86	85.714	Dasypus_novemcinctus
ENSJJAG00000011800	Trub1	100	84.150	ENSDORG00000010431	Trub1	100	83.237	Dipodomys_ordii
ENSJJAG00000011800	Trub1	65	87.324	ENSETEG00000009183	TRUB1	65	84.564	Echinops_telfairi
ENSJJAG00000011800	Trub1	88	90.667	ENSEASG00005014739	TRUB1	100	83.714	Equus_asinus_asinus
ENSJJAG00000011800	Trub1	88	90.667	ENSECAG00000007177	TRUB1	100	83.714	Equus_caballus
ENSJJAG00000011800	Trub1	86	78.571	ENSEEUG00000013993	TRUB1	84	78.000	Erinaceus_europaeus
ENSJJAG00000011800	Trub1	72	69.796	ENSELUG00000000502	trub1	86	69.796	Esox_lucius
ENSJJAG00000011800	Trub1	88	90.940	ENSFCAG00000031927	TRUB1	99	83.908	Felis_catus
ENSJJAG00000011800	Trub1	71	74.689	ENSFALG00000002232	TRUB1	93	74.689	Ficedula_albicollis
ENSJJAG00000011800	Trub1	68	80.833	ENSFDAG00000008140	TRUB1	80	94.359	Fukomys_damarensis
ENSJJAG00000011800	Trub1	79	62.172	ENSFHEG00000004016	trub1	91	62.172	Fundulus_heteroclitus
ENSJJAG00000011800	Trub1	80	72.694	ENSGALG00000009091	TRUB1	97	71.090	Gallus_gallus
ENSJJAG00000011800	Trub1	71	63.525	ENSGAFG00000009193	trub1	86	63.525	Gambusia_affinis
ENSJJAG00000011800	Trub1	59	66.332	ENSGACG00000015387	trub1	96	67.179	Gasterosteus_aculeatus
ENSJJAG00000011800	Trub1	85	74.828	ENSGAGG00000009758	TRUB1	81	75.887	Gopherus_agassizii
ENSJJAG00000011800	Trub1	99	83.954	ENSGGOG00000004583	TRUB1	85	91.639	Gorilla_gorilla
ENSJJAG00000011800	Trub1	74	65.079	ENSHBUG00000016787	trub1	91	65.079	Haplochromis_burtoni
ENSJJAG00000011800	Trub1	100	78.571	ENSHGLG00000015314	TRUB1	86	86.333	Heterocephalus_glaber_female
ENSJJAG00000011800	Trub1	57	92.308	ENSHGLG00100009183	TRUB1	82	92.308	Heterocephalus_glaber_male
ENSJJAG00000011800	Trub1	72	67.347	ENSHCOG00000017877	trub1	89	67.347	Hippocampus_comes
ENSJJAG00000011800	Trub1	79	65.185	ENSIPUG00000017559	trub1	94	65.185	Ictalurus_punctatus
ENSJJAG00000011800	Trub1	88	89.667	ENSSTOG00000003641	TRUB1	100	82.941	Ictidomys_tridecemlineatus
ENSJJAG00000011800	Trub1	74	64.981	ENSKMAG00000006232	trub1	92	64.981	Kryptolebias_marmoratus
ENSJJAG00000011800	Trub1	76	64.151	ENSLBEG00000026722	trub1	93	64.151	Labrus_bergylta
ENSJJAG00000011800	Trub1	81	72.263	ENSLACG00000014885	TRUB1	92	72.263	Latimeria_chalumnae
ENSJJAG00000011800	Trub1	80	68.864	ENSLOCG00000012979	trub1	93	68.864	Lepisosteus_oculatus
ENSJJAG00000011800	Trub1	86	83.667	ENSLAFG00000015452	TRUB1	86	84.667	Loxodonta_africana
ENSJJAG00000011800	Trub1	99	84.527	ENSMFAG00000031767	TRUB1	99	84.814	Macaca_fascicularis
ENSJJAG00000011800	Trub1	99	84.527	ENSMMUG00000001902	TRUB1	99	84.814	Macaca_mulatta
ENSJJAG00000011800	Trub1	99	80.229	ENSMNEG00000044646	TRUB1	99	80.516	Macaca_nemestrina
ENSJJAG00000011800	Trub1	99	84.527	ENSMLEG00000042655	TRUB1	99	84.527	Mandrillus_leucophaeus
ENSJJAG00000011800	Trub1	74	65.079	ENSMZEG00005024095	trub1	91	65.079	Maylandia_zebra
ENSJJAG00000011800	Trub1	79	72.963	ENSMGAG00000011135	TRUB1	93	72.963	Meleagris_gallopavo
ENSJJAG00000011800	Trub1	88	83.893	ENSMAUG00000011101	Trub1	100	78.529	Mesocricetus_auratus
ENSJJAG00000011800	Trub1	88	91.333	ENSMICG00000016324	TRUB1	86	91.333	Microcebus_murinus
ENSJJAG00000011800	Trub1	100	79.118	ENSMOCG00000017759	Trub1	90	85.859	Microtus_ochrogaster
ENSJJAG00000011800	Trub1	79	84.701	ENSMODG00000009676	TRUB1	77	82.734	Monodelphis_domestica
ENSJJAG00000011800	Trub1	100	75.731	MGP_CAROLIEiJ_G0023100	Trub1	100	78.235	Mus_caroli
ENSJJAG00000011800	Trub1	100	74.854	ENSMUSG00000025086	Trub1	100	77.059	Mus_musculus
ENSJJAG00000011800	Trub1	100	79.118	MGP_PahariEiJ_G0014588	Trub1	100	79.118	Mus_pahari
ENSJJAG00000011800	Trub1	100	75.146	MGP_SPRETEiJ_G0024021	Trub1	100	77.353	Mus_spretus
ENSJJAG00000011800	Trub1	88	91.639	ENSMPUG00000003556	TRUB1	99	84.241	Mustela_putorius_furo
ENSJJAG00000011800	Trub1	88	90.000	ENSMLUG00000017686	TRUB1	88	90.000	Myotis_lucifugus
ENSJJAG00000011800	Trub1	100	81.034	ENSNGAG00000018682	Trub1	86	89.000	Nannospalax_galili
ENSJJAG00000011800	Trub1	72	67.073	ENSNBRG00000023393	trub1	88	67.073	Neolamprologus_brichardi
ENSJJAG00000011800	Trub1	88	91.304	ENSNLEG00000016345	TRUB1	99	84.241	Nomascus_leucogenys
ENSJJAG00000011800	Trub1	59	89.552	ENSMEUG00000006603	TRUB1	78	86.730	Notamacropus_eugenii
ENSJJAG00000011800	Trub1	88	83.667	ENSOPRG00000009371	TRUB1	87	83.667	Ochotona_princeps
ENSJJAG00000011800	Trub1	100	77.714	ENSODEG00000010854	TRUB1	86	85.333	Octodon_degus
ENSJJAG00000011800	Trub1	72	66.667	ENSONIG00000007249	trub1	89	66.667	Oreochromis_niloticus
ENSJJAG00000011800	Trub1	80	79.487	ENSOANG00000001556	TRUB1	93	78.292	Ornithorhynchus_anatinus
ENSJJAG00000011800	Trub1	88	86.000	ENSOCUG00000009456	TRUB1	87	86.000	Oryctolagus_cuniculus
ENSJJAG00000011800	Trub1	71	67.635	ENSORLG00000029719	trub1	86	67.635	Oryzias_latipes
ENSJJAG00000011800	Trub1	71	67.635	ENSORLG00020016767	trub1	85	67.635	Oryzias_latipes_hni
ENSJJAG00000011800	Trub1	71	67.220	ENSORLG00015014728	trub1	86	67.220	Oryzias_latipes_hsok
ENSJJAG00000011800	Trub1	71	67.355	ENSOMEG00000014556	trub1	85	67.355	Oryzias_melastigma
ENSJJAG00000011800	Trub1	88	92.000	ENSOGAG00000015895	TRUB1	86	92.000	Otolemur_garnettii
ENSJJAG00000011800	Trub1	87	89.439	ENSOARG00000015591	TRUB1	100	82.670	Ovis_aries
ENSJJAG00000011800	Trub1	99	84.241	ENSPPAG00000043645	TRUB1	99	84.527	Pan_paniscus
ENSJJAG00000011800	Trub1	88	90.268	ENSPPRG00000007096	TRUB1	99	82.759	Panthera_pardus
ENSJJAG00000011800	Trub1	88	90.604	ENSPTIG00000006378	TRUB1	99	83.046	Panthera_tigris_altaica
ENSJJAG00000011800	Trub1	99	84.241	ENSPTRG00000002964	TRUB1	99	84.527	Pan_troglodytes
ENSJJAG00000011800	Trub1	99	84.527	ENSPANG00000020712	TRUB1	99	84.814	Papio_anubis
ENSJJAG00000011800	Trub1	61	59.346	ENSPKIG00000003852	trub1	92	59.346	Paramormyrops_kingsleyae
ENSJJAG00000011800	Trub1	80	75.277	ENSPSIG00000012877	TRUB1	93	75.277	Pelodiscus_sinensis
ENSJJAG00000011800	Trub1	72	66.122	ENSPMGG00000000075	trub1	88	66.122	Periophthalmus_magnuspinnatus
ENSJJAG00000011800	Trub1	100	78.363	ENSPEMG00000011156	Trub1	88	84.899	Peromyscus_maniculatus_bairdii
ENSJJAG00000011800	Trub1	84	80.769	ENSPCIG00000009729	TRUB1	79	79.795	Phascolarctos_cinereus
ENSJJAG00000011800	Trub1	72	65.306	ENSPFOG00000009950	trub1	90	65.306	Poecilia_formosa
ENSJJAG00000011800	Trub1	72	65.306	ENSPLAG00000013855	trub1	86	65.306	Poecilia_latipinna
ENSJJAG00000011800	Trub1	72	65.306	ENSPMEG00000009064	trub1	88	65.306	Poecilia_mexicana
ENSJJAG00000011800	Trub1	72	66.122	ENSPREG00000003343	trub1	88	66.122	Poecilia_reticulata
ENSJJAG00000011800	Trub1	88	91.304	ENSPPYG00000002676	TRUB1	99	84.527	Pongo_abelii
ENSJJAG00000011800	Trub1	88	78.595	ENSPCAG00000008427	TRUB1	85	78.595	Procavia_capensis
ENSJJAG00000011800	Trub1	88	85.667	ENSPCOG00000024360	TRUB1	85	85.667	Propithecus_coquereli
ENSJJAG00000011800	Trub1	62	95.283	ENSPVAG00000007575	TRUB1	81	95.283	Pteropus_vampyrus
ENSJJAG00000011800	Trub1	74	65.079	ENSPNYG00000018614	trub1	91	65.079	Pundamilia_nyererei
ENSJJAG00000011800	Trub1	72	61.066	ENSPNAG00000006881	trub1	78	61.066	Pygocentrus_nattereri
ENSJJAG00000011800	Trub1	100	80.645	ENSRNOG00000017321	Trub1	100	80.645	Rattus_norvegicus
ENSJJAG00000011800	Trub1	99	74.499	ENSRBIG00000033423	TRUB1	99	74.785	Rhinopithecus_bieti
ENSJJAG00000011800	Trub1	99	83.954	ENSRROG00000033902	TRUB1	99	84.241	Rhinopithecus_roxellana
ENSJJAG00000011800	Trub1	88	92.308	ENSSBOG00000024237	TRUB1	85	92.308	Saimiri_boliviensis_boliviensis
ENSJJAG00000011800	Trub1	75	78.906	ENSSHAG00000009346	TRUB1	86	78.906	Sarcophilus_harrisii
ENSJJAG00000011800	Trub1	71	69.136	ENSSFOG00015022124	trub1	83	69.136	Scleropages_formosus
ENSJJAG00000011800	Trub1	72	67.480	ENSSMAG00000001020	trub1	88	67.480	Scophthalmus_maximus
ENSJJAG00000011800	Trub1	71	67.917	ENSSDUG00000016414	trub1	88	67.886	Seriola_dumerili
ENSJJAG00000011800	Trub1	71	68.333	ENSSLDG00000015486	trub1	88	68.293	Seriola_lalandi_dorsalis
ENSJJAG00000011800	Trub1	82	77.061	ENSSPUG00000001642	TRUB1	96	77.061	Sphenodon_punctatus
ENSJJAG00000011800	Trub1	77	65.399	ENSSPAG00000001217	trub1	94	65.399	Stegastes_partitus
ENSJJAG00000011800	Trub1	100	79.143	ENSSSCG00000010653	TRUB1	100	80.286	Sus_scrofa
ENSJJAG00000011800	Trub1	79	74.721	ENSTGUG00000010971	TRUB1	96	74.539	Taeniopygia_guttata
ENSJJAG00000011800	Trub1	74	75.494	ENSTBEG00000002880	TRUB1	99	75.494	Tupaia_belangeri
ENSJJAG00000011800	Trub1	63	95.327	ENSTTRG00000005767	TRUB1	100	85.496	Tursiops_truncatus
ENSJJAG00000011800	Trub1	88	91.973	ENSUAMG00000024876	TRUB1	99	84.241	Ursus_americanus
ENSJJAG00000011800	Trub1	87	92.203	ENSUMAG00000002411	TRUB1	99	84.661	Ursus_maritimus
ENSJJAG00000011800	Trub1	100	83.429	ENSVPAG00000005507	TRUB1	100	83.429	Vicugna_pacos
ENSJJAG00000011800	Trub1	99	85.549	ENSVVUG00000010085	TRUB1	83	85.838	Vulpes_vulpes
ENSJJAG00000011800	Trub1	78	67.045	ENSXETG00000023828	trub1	95	67.045	Xenopus_tropicalis
ENSJJAG00000011800	Trub1	71	64.198	ENSXCOG00000017847	trub1	86	64.198	Xiphophorus_couchianus
ENSJJAG00000011800	Trub1	72	64.490	ENSXMAG00000014701	trub1	88	64.490	Xiphophorus_maculatus