EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSJJAG00000012145 (Gene tree)
Gene ID
101606542
Gene Symbol
-
Alias
2010208O10Rik|2310034K10Rik
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Jaculus_jaculus
Status
putative
Strand
Plus strand
Length
7490 bases
Position
chrJH725445.1:6074321-6081810
Accession
101606542
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSJJAP00000007810LSMPF01423.222.1e-2011
ENSJJAP00000007814LSMPF01423.222.6e-0611
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSJJAT00000014230-300XM_004652755ENSJJAP0000000781091 (aa)XP_004652812UPI000332EC81
ENSJJAT00000014234-180-ENSJJAP0000000781459 (aa)--
Gene Model
Click here to download ENSJJAG00000012145's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSJJAG00000012145's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSJJAG00000012145-10068.132ENSJJAG00000016144-9268.132
ENSJJAG00000012145-7635.211ENSJJAG00000022841-7735.211
ENSJJAG00000012145-8236.709ENSJJAG00000012797-7236.709
ENSJJAG00000012145-8792.405ENSJJAG00000004475-10092.405
ENSJJAG00000012145-8234.667ENSJJAG00000017351Lsm37434.667
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSJJAG00000012145-10097.802ENSG00000106355LSM5100100.000Homo_sapiens
ENSJJAG00000012145-10093.407ENSAPOG00000020779LSM510093.407Acanthochromis_polyacanthus
ENSJJAG00000012145-9092.683ENSAPOG00000011743LSM510096.774Acanthochromis_polyacanthus
ENSJJAG00000012145-10097.802ENSAMEG00000006700LSM510097.802Ailuropoda_melanoleuca
ENSJJAG00000012145-9394.545ENSACIG00000019185lsm59894.545Amphilophus_citrinellus
ENSJJAG00000012145-10093.407ENSAOCG00000001636lsm510093.407Amphiprion_ocellaris
ENSJJAG00000012145-7693.333ENSAPEG00000008201lsm510096.774Amphiprion_percula
ENSJJAG00000012145-10093.407ENSAPEG00000008151lsm510093.407Amphiprion_percula
ENSJJAG00000012145-10089.831ENSATEG00000020470lsm510089.831Anabas_testudineus
ENSJJAG00000012145-81100.000ENSAPLG00000008171LSM5100100.000Anas_platyrhynchos
ENSJJAG00000012145-6296.429ENSACAG00000009530LSM59396.429Anolis_carolinensis
ENSJJAG00000012145-9993.333ENSANAG00000024192-9493.333Aotus_nancymaae
ENSJJAG00000012145-10096.703ENSANAG00000034409-10096.703Aotus_nancymaae
ENSJJAG00000012145-10076.923ENSANAG00000037758-10076.923Aotus_nancymaae
ENSJJAG00000012145-9695.402ENSACLG00000012891lsm59995.402Astatotilapia_calliptera
ENSJJAG00000012145-10079.787ENSAMXG00000035543lsm510079.787Astyanax_mexicanus
ENSJJAG00000012145-5377.083ENSBTAG00000052014-6377.083Bos_taurus
ENSJJAG00000012145-10097.802ENSBTAG00000002332LSM510097.802Bos_taurus
ENSJJAG00000012145-10072.527WBGene00003079lsm-510072.527Caenorhabditis_elegans
ENSJJAG00000012145-9886.517ENSCJAG00000005678-9986.517Callithrix_jacchus
ENSJJAG00000012145-10097.802ENSCJAG00000047379LSM58188.462Callithrix_jacchus
ENSJJAG00000012145-5590.000ENSCAFG00000030781-5890.000Canis_familiaris
ENSJJAG00000012145-10096.703ENSCAFG00000019261-10096.703Canis_familiaris
ENSJJAG00000012145-10097.802ENSCAFG00020004946LSM510097.802Canis_lupus_dingo
ENSJJAG00000012145-8172.973ENSCHIG00000021428-9570.455Capra_hircus
ENSJJAG00000012145-10095.604ENSCHIG00000004079-10095.604Capra_hircus
ENSJJAG00000012145-10097.802ENSCHIG00000024539LSM510097.802Capra_hircus
ENSJJAG00000012145-10097.802ENSTSYG00000006449-10097.802Carlito_syrichta
ENSJJAG00000012145-10072.527ENSTSYG00000036637-10072.527Carlito_syrichta
ENSJJAG00000012145-10079.121ENSTSYG00000026530-9179.121Carlito_syrichta
ENSJJAG00000012145-10084.615ENSTSYG00000028728-10084.615Carlito_syrichta
ENSJJAG00000012145-8292.000ENSCAPG00000006980LSM510092.000Cavia_aperea
ENSJJAG00000012145-10097.802ENSCPOG00000036386LSM510097.802Cavia_porcellus
ENSJJAG00000012145-10079.121ENSCCAG00000032792-10079.121Cebus_capucinus
ENSJJAG00000012145-10097.802ENSCCAG00000037808-10097.802Cebus_capucinus
ENSJJAG00000012145-10069.231ENSCCAG00000037334-10069.231Cebus_capucinus
ENSJJAG00000012145-10096.703ENSCCAG00000000821-10096.703Cebus_capucinus
ENSJJAG00000012145-10095.604ENSCCAG00000032123-10095.604Cebus_capucinus
ENSJJAG00000012145-10097.802ENSCATG00000040218LSM5100100.000Cercocebus_atys
ENSJJAG00000012145-9986.667ENSCATG00000014790-9594.545Cercocebus_atys
ENSJJAG00000012145-10082.418ENSCLAG00000005062-9082.418Chinchilla_lanigera
ENSJJAG00000012145-10097.802ENSCLAG00000000202LSM510097.802Chinchilla_lanigera
ENSJJAG00000012145-8297.333ENSCHOG00000005335LSM59997.333Choloepus_hoffmanni
ENSJJAG00000012145-10097.802ENSCPBG00000013685LSM510097.802Chrysemys_picta_bellii
ENSJJAG00000012145-9588.372ENSCING00000020625-9788.372Ciona_intestinalis
ENSJJAG00000012145-9588.372ENSCSAVG00000001439-9888.372Ciona_savignyi
ENSJJAG00000012145-10097.802ENSCANG00000039909LSM5100100.000Colobus_angolensis_palliatus
ENSJJAG00000012145-10097.802ENSCGRG00001015461Lsm510097.802Cricetulus_griseus_chok1gshd
ENSJJAG00000012145-82100.000ENSCGRG00000007677Lsm5100100.000Cricetulus_griseus_crigri
ENSJJAG00000012145-10091.525ENSCSEG00000015286lsm510091.525Cynoglossus_semilaevis
ENSJJAG00000012145-10092.308ENSCVAG00000004262lsm510092.308Cyprinodon_variegatus
ENSJJAG00000012145-10092.308ENSDARG00000071573lsm510096.774Danio_rerio
ENSJJAG00000012145-10097.802ENSDNOG00000034958LSM510097.802Dasypus_novemcinctus
ENSJJAG00000012145-9687.356ENSDNOG00000049495-9687.356Dasypus_novemcinctus
ENSJJAG00000012145-10097.802ENSDORG00000009422Lsm510097.802Dipodomys_ordii
ENSJJAG00000012145-9879.775FBgn0035675CG66109879.775Drosophila_melanogaster
ENSJJAG00000012145-10097.802ENSETEG00000018068LSM510097.802Echinops_telfairi
ENSJJAG00000012145-8181.081ENSETEG00000016074-9881.081Echinops_telfairi
ENSJJAG00000012145-10079.121ENSETEG00000010651-10079.121Echinops_telfairi
ENSJJAG00000012145-9973.333ENSETEG00000001469-9973.333Echinops_telfairi
ENSJJAG00000012145-9866.292ENSETEG00000000777-9966.292Echinops_telfairi
ENSJJAG00000012145-10091.209ENSEBUG00000008540lsm510091.209Eptatretus_burgeri
ENSJJAG00000012145-10097.802ENSEASG00005003500LSM510097.802Equus_asinus_asinus
ENSJJAG00000012145-10083.516ENSECAG00000018445LSM510083.516Equus_caballus
ENSJJAG00000012145-7688.889ENSEEUG00000004102LSM59594.737Erinaceus_europaeus
ENSJJAG00000012145-10092.308ENSELUG00000007792lsm510092.308Esox_lucius
ENSJJAG00000012145-10097.802ENSFCAG00000000230LSM510097.802Felis_catus
ENSJJAG00000012145-84100.000ENSFALG00000001892LSM592100.000Ficedula_albicollis
ENSJJAG00000012145-9068.293ENSFDAG00000008685-9768.293Fukomys_damarensis
ENSJJAG00000012145-10097.802ENSFDAG00000008767LSM510097.802Fukomys_damarensis
ENSJJAG00000012145-8485.526ENSFHEG00000004011lsm58285.526Fundulus_heteroclitus
ENSJJAG00000012145-9992.222ENSGMOG00000018235lsm510092.222Gadus_morhua
ENSJJAG00000012145-10096.703ENSGALG00000041625LSM510096.703Gallus_gallus
ENSJJAG00000012145-7693.333ENSGAFG00000016824lsm510096.774Gambusia_affinis
ENSJJAG00000012145-10093.407ENSGACG00000005528lsm510093.407Gasterosteus_aculeatus
ENSJJAG00000012145-10097.802ENSGAGG00000015593LSM510097.802Gopherus_agassizii
ENSJJAG00000012145-10097.802ENSGGOG00000043469LSM510097.802Gorilla_gorilla
ENSJJAG00000012145-9695.402ENSHBUG00000013773lsm59995.402Haplochromis_burtoni
ENSJJAG00000012145-10097.802ENSHGLG00000011765LSM510097.802Heterocephalus_glaber_female
ENSJJAG00000012145-10094.505ENSHGLG00100015610LSM510094.505Heterocephalus_glaber_male
ENSJJAG00000012145-10089.831ENSHCOG00000008288lsm510089.831Hippocampus_comes
ENSJJAG00000012145-10091.209ENSIPUG00000021095LSM510091.209Ictalurus_punctatus
ENSJJAG00000012145-10097.802ENSSTOG00000012662LSM510097.802Ictidomys_tridecemlineatus
ENSJJAG00000012145-9282.558ENSSTOG00000033886-9782.558Ictidomys_tridecemlineatus
ENSJJAG00000012145-10092.308ENSKMAG00000021861lsm510092.308Kryptolebias_marmoratus
ENSJJAG00000012145-10084.615ENSLBEG00000009235LSM57084.615Labrus_bergylta
ENSJJAG00000012145-6276.786ENSLBEG00000017379lsm59276.786Labrus_bergylta
ENSJJAG00000012145-10093.407ENSLACG00000022448LSM510093.407Latimeria_chalumnae
ENSJJAG00000012145-10092.308ENSLOCG00000012903lsm510092.308Lepisosteus_oculatus
ENSJJAG00000012145-10097.802ENSLAFG00000029579LSM510097.802Loxodonta_africana
ENSJJAG00000012145-10069.231ENSLAFG00000027938-10069.231Loxodonta_africana
ENSJJAG00000012145-5393.750ENSMFAG00000031187-8193.750Macaca_fascicularis
ENSJJAG00000012145-10094.505ENSMFAG00000030152-10094.505Macaca_fascicularis
ENSJJAG00000012145-10097.802ENSMFAG00000038508LSM510097.802Macaca_fascicularis
ENSJJAG00000012145-10094.505ENSMMUG00000030131-10094.505Macaca_mulatta
ENSJJAG00000012145-5788.462ENSMMUG00000045129-8188.462Macaca_mulatta
ENSJJAG00000012145-9987.778ENSMMUG00000039822-10087.778Macaca_mulatta
ENSJJAG00000012145-10094.505ENSMNEG00000037935-10094.505Macaca_nemestrina
ENSJJAG00000012145-10097.802ENSMNEG00000015331LSM5100100.000Macaca_nemestrina
ENSJJAG00000012145-9887.640ENSMLEG00000034037-10087.640Mandrillus_leucophaeus
ENSJJAG00000012145-10097.802ENSMLEG00000024945LSM510097.802Mandrillus_leucophaeus
ENSJJAG00000012145-10089.011ENSMAMG00000012869lsm510089.011Mastacembelus_armatus
ENSJJAG00000012145-9695.402ENSMZEG00005019554lsm59995.402Maylandia_zebra
ENSJJAG00000012145-10096.703ENSMGAG00000012117LSM510096.703Meleagris_gallopavo
ENSJJAG00000012145-10096.703ENSMAUG00000008132-10096.703Mesocricetus_auratus
ENSJJAG00000012145-10097.802ENSMAUG00000012222Lsm510097.802Mesocricetus_auratus
ENSJJAG00000012145-9975.556ENSMICG00000033928-9675.556Microcebus_murinus
ENSJJAG00000012145-10097.802ENSMICG00000005353LSM510097.802Microcebus_murinus
ENSJJAG00000012145-10097.802ENSMOCG00000012018Lsm510097.802Microtus_ochrogaster
ENSJJAG00000012145-8497.368ENSMMOG00000004026lsm58797.368Mola_mola
ENSJJAG00000012145-7695.556ENSMODG00000013274-100100.000Monodelphis_domestica
ENSJJAG00000012145-7686.667ENSMALG00000010343lsm510091.935Monopterus_albus
ENSJJAG00000012145-10097.802MGP_CAROLIEiJ_G0028421Lsm5100100.000Mus_caroli
ENSJJAG00000012145-10097.802ENSMUSG00000091625Lsm5100100.000Mus_musculus
ENSJJAG00000012145-10097.802MGP_PahariEiJ_G0022171Lsm5100100.000Mus_pahari
ENSJJAG00000012145-10097.802MGP_SPRETEiJ_G0029423Lsm5100100.000Mus_spretus
ENSJJAG00000012145-10097.802ENSMLUG00000017028LSM510097.802Myotis_lucifugus
ENSJJAG00000012145-10086.022ENSNGAG00000017707-10086.022Nannospalax_galili
ENSJJAG00000012145-10097.802ENSNGAG00000024142Lsm510097.802Nannospalax_galili
ENSJJAG00000012145-9976.667ENSNGAG00000022569-9676.667Nannospalax_galili
ENSJJAG00000012145-7693.333ENSNBRG00000011386lsm57696.491Neolamprologus_brichardi
ENSJJAG00000012145-10097.802ENSNLEG00000015268LSM510097.802Nomascus_leucogenys
ENSJJAG00000012145-82100.000ENSOPRG00000002443LSM5100100.000Ochotona_princeps
ENSJJAG00000012145-10097.802ENSODEG00000019072-10097.802Octodon_degus
ENSJJAG00000012145-10097.802ENSODEG00000008258-10097.802Octodon_degus
ENSJJAG00000012145-8261.333ENSOANG00000014540-10061.333Ornithorhynchus_anatinus
ENSJJAG00000012145-10097.802ENSOCUG00000029043LSM510097.802Oryctolagus_cuniculus
ENSJJAG00000012145-10091.209ENSORLG00000027725lsm55891.209Oryzias_latipes
ENSJJAG00000012145-9688.506ENSORLG00020003019lsm58392.500Oryzias_latipes_hni
ENSJJAG00000012145-10091.209ENSORLG00015003338lsm510091.209Oryzias_latipes_hsok
ENSJJAG00000012145-10090.110ENSOMEG00000001078lsm510090.110Oryzias_melastigma
ENSJJAG00000012145-10097.802ENSOGAG00000013892LSM510097.802Otolemur_garnettii
ENSJJAG00000012145-10097.802ENSOARG00000006944LSM510097.802Ovis_aries
ENSJJAG00000012145-10097.802ENSPPAG00000003697-10097.802Pan_paniscus
ENSJJAG00000012145-10097.802ENSPPRG00000002550LSM510097.802Panthera_pardus
ENSJJAG00000012145-10097.802ENSPTIG00000015604LSM510097.802Panthera_tigris_altaica
ENSJJAG00000012145-10097.802ENSPTRG00000019057LSM510097.802Pan_troglodytes
ENSJJAG00000012145-10081.319ENSPTRG00000049488-10083.516Pan_troglodytes
ENSJJAG00000012145-10093.407ENSPANG00000033477-10093.407Papio_anubis
ENSJJAG00000012145-9987.778ENSPANG00000032538-10087.778Papio_anubis
ENSJJAG00000012145-10097.802ENSPANG00000032179-10097.802Papio_anubis
ENSJJAG00000012145-10092.308ENSPKIG00000011910lsm510092.308Paramormyrops_kingsleyae
ENSJJAG00000012145-81100.000ENSPSIG00000014796LSM5100100.000Pelodiscus_sinensis
ENSJJAG00000012145-7693.333ENSPMGG00000011699lsm510096.774Periophthalmus_magnuspinnatus
ENSJJAG00000012145-5295.745ENSPEMG00000019994-8095.745Peromyscus_maniculatus_bairdii
ENSJJAG00000012145-10071.429ENSPEMG00000022375-10071.429Peromyscus_maniculatus_bairdii
ENSJJAG00000012145-10092.308ENSPFOG00000001433lsm510092.308Poecilia_formosa
ENSJJAG00000012145-10092.308ENSPLAG00000009665lsm510092.308Poecilia_latipinna
ENSJJAG00000012145-10092.308ENSPMEG00000022265lsm510092.308Poecilia_mexicana
ENSJJAG00000012145-7693.333ENSPREG00000022452lsm510096.774Poecilia_reticulata
ENSJJAG00000012145-10094.505ENSPPYG00000017661LSM510094.505Pongo_abelii
ENSJJAG00000012145-8997.531ENSPCAG00000013740LSM510097.531Procavia_capensis
ENSJJAG00000012145-10097.802ENSPVAG00000009786LSM510097.802Pteropus_vampyrus
ENSJJAG00000012145-9695.402ENSPNYG00000022236lsm59995.402Pundamilia_nyererei
ENSJJAG00000012145-10091.209ENSPNAG00000001887lsm510091.209Pygocentrus_nattereri
ENSJJAG00000012145-10093.478ENSRNOG00000027305AABR07065089.110093.478Rattus_norvegicus
ENSJJAG00000012145-10097.802ENSRNOG00000042126Lsm510097.802Rattus_norvegicus
ENSJJAG00000012145-10097.802ENSRBIG00000030340-10097.802Rhinopithecus_bieti
ENSJJAG00000012145-10096.703ENSRBIG00000024431-10096.703Rhinopithecus_bieti
ENSJJAG00000012145-10097.802ENSRBIG00000027803-100100.000Rhinopithecus_bieti
ENSJJAG00000012145-10097.802ENSRBIG00000030714-10097.802Rhinopithecus_bieti
ENSJJAG00000012145-10097.802ENSRROG00000042782-100100.000Rhinopithecus_roxellana
ENSJJAG00000012145-10097.802ENSRROG00000023884-10097.802Rhinopithecus_roxellana
ENSJJAG00000012145-10097.802ENSRROG00000004655-10097.802Rhinopithecus_roxellana
ENSJJAG00000012145-8551.220YER146W-8851.220Saccharomyces_cerevisiae
ENSJJAG00000012145-10097.802ENSSBOG00000012312LSM510097.802Saimiri_boliviensis_boliviensis
ENSJJAG00000012145-10075.824ENSSBOG00000034794-10075.824Saimiri_boliviensis_boliviensis
ENSJJAG00000012145-10095.604ENSSBOG00000019124-10095.604Saimiri_boliviensis_boliviensis
ENSJJAG00000012145-10092.308ENSSFOG00015010099lsm510092.308Scleropages_formosus
ENSJJAG00000012145-10091.525ENSSMAG00000007895lsm510091.525Scophthalmus_maximus
ENSJJAG00000012145-7693.333ENSSDUG00000010762lsm510096.774Seriola_dumerili
ENSJJAG00000012145-8678.205ENSSLDG00000008014-9378.205Seriola_lalandi_dorsalis
ENSJJAG00000012145-10092.308ENSSLDG00000025242lsm510092.308Seriola_lalandi_dorsalis
ENSJJAG00000012145-10070.330ENSSARG00000003330LSM510070.330Sorex_araneus
ENSJJAG00000012145-10097.802ENSSPUG00000002690LSM510098.387Sphenodon_punctatus
ENSJJAG00000012145-10091.525ENSSPAG00000005435lsm510091.525Stegastes_partitus
ENSJJAG00000012145-10097.802ENSSSCG00000026064-10097.802Sus_scrofa
ENSJJAG00000012145-7685.507ENSSSCG00000029661-9685.507Sus_scrofa
ENSJJAG00000012145-10094.505ENSTGUG00000017539LSM510094.505Taeniopygia_guttata
ENSJJAG00000012145-8687.952ENSTRUG00000017749lsm56487.952Takifugu_rubripes
ENSJJAG00000012145-9695.402ENSTNIG00000008695lsm59995.402Tetraodon_nigroviridis
ENSJJAG00000012145-10097.802ENSTBEG00000004876LSM510097.802Tupaia_belangeri
ENSJJAG00000012145-10097.802ENSTTRG00000004237LSM510097.802Tursiops_truncatus
ENSJJAG00000012145-5788.462ENSUAMG00000009786LSM56888.462Ursus_americanus
ENSJJAG00000012145-10096.703ENSUMAG00000002625LSM56596.703Ursus_maritimus
ENSJJAG00000012145-10097.802ENSVPAG00000009985LSM510097.802Vicugna_pacos
ENSJJAG00000012145-10097.802ENSVVUG00000021311LSM510097.802Vulpes_vulpes
ENSJJAG00000012145-9092.683ENSXETG00000026465lsm510092.683Xenopus_tropicalis
ENSJJAG00000012145-7693.333ENSXCOG00000015348lsm510096.774Xiphophorus_couchianus
ENSJJAG00000012145-10092.308ENSXMAG00000029988lsm510092.308Xiphophorus_maculatus

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