EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSJJAG00000013113 (Gene tree)
Gene ID: 101617421
Gene Symbol: Polr1a
Alias: 194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Jaculus_jaculus
Status: putative
Strand: Plus strand
Length: 74359 bases
Position: chrJH725473.1:2033399-2107757
Accession: 101617421
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSJJAP00000009222	RNA_pol_Rpb1_5	PF04998.17	1.4e-102	1	1
ENSJJAP00000009219	RNA_pol_Rpb1_5	PF04998.17	1.4e-102	1	1
ENSJJAP00000009222	RNA_pol_Rpb1_4	PF05000.17	4e-25	1	1
ENSJJAP00000009219	RNA_pol_Rpb1_4	PF05000.17	4e-25	1	1
ENSJJAP00000009222	RNA_pol_Rpb1_2	PF00623.20	2.8e-70	1	1
ENSJJAP00000009219	RNA_pol_Rpb1_2	PF00623.20	2.8e-70	1	1
ENSJJAP00000009219	RNA_pol_Rpb1_3	PF04983.18	1.6e-35	1	1
ENSJJAP00000009222	RNA_pol_Rpb1_3	PF04983.18	1.6e-35	1	1
ENSJJAP00000009219	RNA_pol_Rpb1_1	PF04997.12	1e-22	1	1
ENSJJAP00000009222	RNA_pol_Rpb1_1	PF04997.12	1.1e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSJJAT00000015665	-	5154	-	ENSJJAP00000009219	1717 (aa)	-	-
ENSJJAT00000015668	-	5148	XM_004660520	ENSJJAP00000009222	1715 (aa)	XP_004660577	-

Gene Model

Click here to download ENSJJAG00000013113's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSJJAG00000013113's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSJJAG00000013113	Polr1a	69	32.727	ENSJJAG00000013049	Polr2a	55	37.143

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSJJAG00000013113	Polr1a	100	87.246	ENSG00000068654	POLR1A	100	87.014	Homo_sapiens
ENSJJAG00000013113	Polr1a	68	68.448	ENSAPOG00000017945	polr1a	99	68.448	Acanthochromis_polyacanthus
ENSJJAG00000013113	Polr1a	100	87.573	ENSAMEG00000005807	POLR1A	100	90.286	Ailuropoda_melanoleuca
ENSJJAG00000013113	Polr1a	96	67.378	ENSACIG00000022147	polr1a	100	67.562	Amphilophus_citrinellus
ENSJJAG00000013113	Polr1a	100	66.165	ENSAOCG00000017336	polr1a	100	67.180	Amphiprion_ocellaris
ENSJJAG00000013113	Polr1a	94	73.611	ENSAPEG00000016105	polr1a	98	73.611	Amphiprion_percula
ENSJJAG00000013113	Polr1a	100	65.876	ENSATEG00000016773	polr1a	100	65.647	Anabas_testudineus
ENSJJAG00000013113	Polr1a	86	72.777	ENSAPLG00000013871	POLR1A	99	72.777	Anas_platyrhynchos
ENSJJAG00000013113	Polr1a	99	69.414	ENSACAG00000012141	POLR1A	99	68.692	Anolis_carolinensis
ENSJJAG00000013113	Polr1a	100	86.593	ENSANAG00000033927	POLR1A	100	86.941	Aotus_nancymaae
ENSJJAG00000013113	Polr1a	100	62.399	ENSACLG00000020541	polr1a	100	62.681	Astatotilapia_calliptera
ENSJJAG00000013113	Polr1a	100	87.456	ENSBTAG00000006481	POLR1A	100	87.456	Bos_taurus
ENSJJAG00000013113	Polr1a	99	38.466	WBGene00012999	rpoa-1	98	38.418	Caenorhabditis_elegans
ENSJJAG00000013113	Polr1a	100	86.145	ENSCJAG00000019547	POLR1A	100	86.319	Callithrix_jacchus
ENSJJAG00000013113	Polr1a	100	88.095	ENSCAFG00000007613	POLR1A	100	88.095	Canis_familiaris
ENSJJAG00000013113	Polr1a	100	88.058	ENSCAFG00020014752	POLR1A	100	88.058	Canis_lupus_dingo
ENSJJAG00000013113	Polr1a	100	86.461	ENSCHIG00000018204	POLR1A	100	86.171	Capra_hircus
ENSJJAG00000013113	Polr1a	100	86.403	ENSTSYG00000002761	POLR1A	100	86.461	Carlito_syrichta
ENSJJAG00000013113	Polr1a	97	84.781	ENSCAPG00000010132	POLR1A	100	84.781	Cavia_aperea
ENSJJAG00000013113	Polr1a	100	89.213	ENSCPOG00000012350	POLR1A	100	89.213	Cavia_porcellus
ENSJJAG00000013113	Polr1a	100	86.667	ENSCCAG00000019839	POLR1A	100	86.841	Cebus_capucinus
ENSJJAG00000013113	Polr1a	100	87.826	ENSCATG00000029786	POLR1A	100	87.594	Cercocebus_atys
ENSJJAG00000013113	Polr1a	100	89.367	ENSCLAG00000005187	POLR1A	100	89.367	Chinchilla_lanigera
ENSJJAG00000013113	Polr1a	100	87.420	ENSCSAG00000016251	POLR1A	100	87.594	Chlorocebus_sabaeus
ENSJJAG00000013113	Polr1a	99	74.869	ENSCPBG00000001115	POLR1A	99	74.405	Chrysemys_picta_bellii
ENSJJAG00000013113	Polr1a	99	46.300	ENSCSAVG00000007184	-	91	54.950	Ciona_savignyi
ENSJJAG00000013113	Polr1a	100	85.052	ENSCANG00000031785	POLR1A	100	85.052	Colobus_angolensis_palliatus
ENSJJAG00000013113	Polr1a	100	85.640	ENSCGRG00001006651	Polr1a	100	85.640	Cricetulus_griseus_chok1gshd
ENSJJAG00000013113	Polr1a	60	89.679	ENSCGRG00000010834	Polr1a	100	89.679	Cricetulus_griseus_crigri
ENSJJAG00000013113	Polr1a	100	62.035	ENSCSEG00000020190	polr1a	100	61.731	Cynoglossus_semilaevis
ENSJJAG00000013113	Polr1a	100	64.468	ENSCVAG00000020941	polr1a	100	64.203	Cyprinodon_variegatus
ENSJJAG00000013113	Polr1a	99	67.172	ENSDARG00000098375	polr1a	99	66.706	Danio_rerio
ENSJJAG00000013113	Polr1a	100	81.697	ENSDNOG00000010829	POLR1A	100	81.697	Dasypus_novemcinctus
ENSJJAG00000013113	Polr1a	100	88.979	ENSDORG00000008298	Polr1a	100	88.631	Dipodomys_ordii
ENSJJAG00000013113	Polr1a	79	44.541	FBgn0019938	RpI1	99	43.257	Drosophila_melanogaster
ENSJJAG00000013113	Polr1a	72	100.000	ENSETEG00000000412	-	72	100.000	Echinops_telfairi
ENSJJAG00000013113	Polr1a	89	47.925	ENSEBUG00000005667	-	99	48.153	Eptatretus_burgeri
ENSJJAG00000013113	Polr1a	100	88.167	ENSEASG00005001625	POLR1A	100	88.341	Equus_asinus_asinus
ENSJJAG00000013113	Polr1a	100	88.167	ENSECAG00000036306	-	100	91.097	Equus_caballus
ENSJJAG00000013113	Polr1a	100	88.167	ENSECAG00000030510	-	100	91.097	Equus_caballus
ENSJJAG00000013113	Polr1a	100	88.167	ENSECAG00000010092	POLR1A	100	91.097	Equus_caballus
ENSJJAG00000013113	Polr1a	85	92.165	ENSEEUG00000000676	POLR1A	85	92.165	Erinaceus_europaeus
ENSJJAG00000013113	Polr1a	100	67.288	ENSELUG00000012769	polr1a	99	67.288	Esox_lucius
ENSJJAG00000013113	Polr1a	100	87.812	ENSFCAG00000008966	POLR1A	100	87.812	Felis_catus
ENSJJAG00000013113	Polr1a	99	70.713	ENSFALG00000010082	POLR1A	99	71.019	Ficedula_albicollis
ENSJJAG00000013113	Polr1a	100	89.510	ENSFDAG00000013726	POLR1A	100	89.685	Fukomys_damarensis
ENSJJAG00000013113	Polr1a	100	61.405	ENSFHEG00000005996	polr1a	100	61.472	Fundulus_heteroclitus
ENSJJAG00000013113	Polr1a	100	60.548	ENSGMOG00000002230	polr1a	100	60.396	Gadus_morhua
ENSJJAG00000013113	Polr1a	91	69.621	ENSGALG00000038160	-	99	69.750	Gallus_gallus
ENSJJAG00000013113	Polr1a	100	64.381	ENSGAFG00000015266	polr1a	100	63.916	Gambusia_affinis
ENSJJAG00000013113	Polr1a	100	64.060	ENSGACG00000018791	polr1a	100	63.924	Gasterosteus_aculeatus
ENSJJAG00000013113	Polr1a	89	75.408	ENSGAGG00000004984	-	96	81.864	Gopherus_agassizii
ENSJJAG00000013113	Polr1a	100	87.246	ENSGGOG00000001788	POLR1A	100	87.014	Gorilla_gorilla
ENSJJAG00000013113	Polr1a	90	64.785	ENSHBUG00000020021	polr1a	98	70.101	Haplochromis_burtoni
ENSJJAG00000013113	Polr1a	100	90.379	ENSHGLG00000006334	POLR1A	100	90.379	Heterocephalus_glaber_female
ENSJJAG00000013113	Polr1a	100	90.116	ENSHGLG00100006614	POLR1A	100	90.116	Heterocephalus_glaber_male
ENSJJAG00000013113	Polr1a	100	62.847	ENSHCOG00000003345	polr1a	100	62.025	Hippocampus_comes
ENSJJAG00000013113	Polr1a	100	66.396	ENSIPUG00000013174	polr1a	100	65.895	Ictalurus_punctatus
ENSJJAG00000013113	Polr1a	100	87.114	ENSSTOG00000012580	POLR1A	100	87.522	Ictidomys_tridecemlineatus
ENSJJAG00000013113	Polr1a	100	65.678	ENSKMAG00000007399	polr1a	100	65.329	Kryptolebias_marmoratus
ENSJJAG00000013113	Polr1a	94	68.487	ENSLBEG00000015401	polr1a	99	67.222	Labrus_bergylta
ENSJJAG00000013113	Polr1a	53	76.982	ENSLACG00000003218	polr1a	100	76.982	Latimeria_chalumnae
ENSJJAG00000013113	Polr1a	100	70.824	ENSLOCG00000010881	polr1a	100	71.022	Lepisosteus_oculatus
ENSJJAG00000013113	Polr1a	100	87.261	ENSLAFG00000014948	POLR1A	100	87.030	Loxodonta_africana
ENSJJAG00000013113	Polr1a	100	87.420	ENSMFAG00000046097	POLR1A	100	87.594	Macaca_fascicularis
ENSJJAG00000013113	Polr1a	100	87.420	ENSMMUG00000015815	POLR1A	100	87.594	Macaca_mulatta
ENSJJAG00000013113	Polr1a	100	87.420	ENSMNEG00000043313	POLR1A	100	87.594	Macaca_nemestrina
ENSJJAG00000013113	Polr1a	100	86.783	ENSMLEG00000042428	POLR1A	100	86.957	Mandrillus_leucophaeus
ENSJJAG00000013113	Polr1a	100	66.318	ENSMAMG00000016565	polr1a	100	66.376	Mastacembelus_armatus
ENSJJAG00000013113	Polr1a	100	65.630	ENSMZEG00005004915	polr1a	100	65.933	Maylandia_zebra
ENSJJAG00000013113	Polr1a	99	68.870	ENSMGAG00000013111	POLR1A	99	69.101	Meleagris_gallopavo
ENSJJAG00000013113	Polr1a	92	90.673	ENSMAUG00000008497	Polr1a	100	90.482	Mesocricetus_auratus
ENSJJAG00000013113	Polr1a	100	88.065	ENSMICG00000000757	POLR1A	100	88.239	Microcebus_murinus
ENSJJAG00000013113	Polr1a	100	90.756	ENSMOCG00000000122	Polr1a	100	90.465	Microtus_ochrogaster
ENSJJAG00000013113	Polr1a	100	64.959	ENSMMOG00000010216	polr1a	100	64.785	Mola_mola
ENSJJAG00000013113	Polr1a	100	74.871	ENSMODG00000009335	POLR1A	100	75.014	Monodelphis_domestica
ENSJJAG00000013113	Polr1a	100	65.990	ENSMALG00000013363	polr1a	100	65.641	Monopterus_albus
ENSJJAG00000013113	Polr1a	100	88.379	MGP_CAROLIEiJ_G0028494	Polr1a	100	88.263	Mus_caroli
ENSJJAG00000013113	Polr1a	100	88.553	ENSMUSG00000049553	Polr1a	100	88.379	Mus_musculus
ENSJJAG00000013113	Polr1a	100	89.244	MGP_PahariEiJ_G0022230	Polr1a	100	89.070	Mus_pahari
ENSJJAG00000013113	Polr1a	100	86.636	MGP_SPRETEiJ_G0029499	Polr1a	100	86.465	Mus_spretus
ENSJJAG00000013113	Polr1a	100	88.269	ENSMPUG00000009135	POLR1A	100	88.269	Mustela_putorius_furo
ENSJJAG00000013113	Polr1a	100	86.524	ENSMLUG00000015723	POLR1A	100	86.524	Myotis_lucifugus
ENSJJAG00000013113	Polr1a	100	90.761	ENSNGAG00000017907	Polr1a	100	90.354	Nannospalax_galili
ENSJJAG00000013113	Polr1a	100	65.325	ENSNBRG00000000519	polr1a	100	65.933	Neolamprologus_brichardi
ENSJJAG00000013113	Polr1a	100	85.401	ENSNLEG00000002264	POLR1A	100	85.401	Nomascus_leucogenys
ENSJJAG00000013113	Polr1a	75	91.339	ENSMEUG00000011665	-	75	91.339	Notamacropus_eugenii
ENSJJAG00000013113	Polr1a	99	81.342	ENSOPRG00000008269	POLR1A	100	81.636	Ochotona_princeps
ENSJJAG00000013113	Polr1a	100	89.750	ENSODEG00000003542	POLR1A	100	89.983	Octodon_degus
ENSJJAG00000013113	Polr1a	100	65.976	ENSONIG00000015895	polr1a	100	65.723	Oreochromis_niloticus
ENSJJAG00000013113	Polr1a	100	89.523	ENSOCUG00000010138	POLR1A	100	89.697	Oryctolagus_cuniculus
ENSJJAG00000013113	Polr1a	100	65.020	ENSORLG00000008753	polr1a	99	64.421	Oryzias_latipes
ENSJJAG00000013113	Polr1a	100	63.578	ENSORLG00020020726	polr1a	99	63.531	Oryzias_latipes_hni
ENSJJAG00000013113	Polr1a	96	74.468	ENSORLG00015016071	polr1a	99	74.444	Oryzias_latipes_hsok
ENSJJAG00000013113	Polr1a	100	88.573	ENSOGAG00000004031	POLR1A	100	88.399	Otolemur_garnettii
ENSJJAG00000013113	Polr1a	100	86.901	ENSOARG00000020601	POLR1A	100	87.261	Ovis_aries
ENSJJAG00000013113	Polr1a	100	87.014	ENSPPAG00000042450	POLR1A	100	86.783	Pan_paniscus
ENSJJAG00000013113	Polr1a	100	87.812	ENSPPRG00000006702	POLR1A	100	87.812	Panthera_pardus
ENSJJAG00000013113	Polr1a	100	87.334	ENSPTIG00000018783	POLR1A	100	87.334	Panthera_tigris_altaica
ENSJJAG00000013113	Polr1a	100	87.014	ENSPTRG00000012147	POLR1A	100	86.841	Pan_troglodytes
ENSJJAG00000013113	Polr1a	100	87.826	ENSPANG00000025908	POLR1A	100	87.594	Papio_anubis
ENSJJAG00000013113	Polr1a	100	67.791	ENSPKIG00000005468	polr1a	99	73.611	Paramormyrops_kingsleyae
ENSJJAG00000013113	Polr1a	63	71.534	ENSPSIG00000009321	-	99	70.238	Pelodiscus_sinensis
ENSJJAG00000013113	Polr1a	55	68.332	ENSPMGG00000009718	polr1a	95	68.332	Periophthalmus_magnuspinnatus
ENSJJAG00000013113	Polr1a	100	90.413	ENSPEMG00000022224	Polr1a	100	90.354	Peromyscus_maniculatus_bairdii
ENSJJAG00000013113	Polr1a	95	79.243	ENSPCIG00000004222	POLR1A	99	79.243	Phascolarctos_cinereus
ENSJJAG00000013113	Polr1a	100	64.381	ENSPFOG00000005025	polr1a	100	64.559	Poecilia_formosa
ENSJJAG00000013113	Polr1a	100	64.631	ENSPLAG00000021389	polr1a	100	64.866	Poecilia_latipinna
ENSJJAG00000013113	Polr1a	100	62.703	ENSPMEG00000006463	polr1a	100	62.927	Poecilia_mexicana
ENSJJAG00000013113	Polr1a	100	64.713	ENSPREG00000002389	polr1a	100	64.890	Poecilia_reticulata
ENSJJAG00000013113	Polr1a	100	86.775	ENSPPYG00000012217	POLR1A	100	86.543	Pongo_abelii
ENSJJAG00000013113	Polr1a	92	85.093	ENSPCAG00000011582	POLR1A	91	84.953	Procavia_capensis
ENSJJAG00000013113	Polr1a	100	88.123	ENSPCOG00000026987	POLR1A	100	88.586	Propithecus_coquereli
ENSJJAG00000013113	Polr1a	95	86.131	ENSPVAG00000012674	POLR1A	95	85.965	Pteropus_vampyrus
ENSJJAG00000013113	Polr1a	100	65.630	ENSPNYG00000000026	polr1a	100	65.933	Pundamilia_nyererei
ENSJJAG00000013113	Polr1a	100	67.071	ENSPNAG00000019223	polr1a	99	69.252	Pygocentrus_nattereri
ENSJJAG00000013113	Polr1a	100	90.000	ENSRNOG00000009545	Polr1a	100	90.000	Rattus_norvegicus
ENSJJAG00000013113	Polr1a	100	87.304	ENSRBIG00000028335	POLR1A	100	87.478	Rhinopithecus_bieti
ENSJJAG00000013113	Polr1a	100	87.246	ENSRROG00000031473	POLR1A	100	87.420	Rhinopithecus_roxellana
ENSJJAG00000013113	Polr1a	99	37.571	YOR341W	RPA190	99	37.177	Saccharomyces_cerevisiae
ENSJJAG00000013113	Polr1a	100	85.913	ENSSBOG00000030262	POLR1A	100	86.087	Saimiri_boliviensis_boliviensis
ENSJJAG00000013113	Polr1a	100	73.545	ENSSHAG00000014739	POLR1A	100	73.702	Sarcophilus_harrisii
ENSJJAG00000013113	Polr1a	100	67.558	ENSSFOG00015019716	polr1a	100	67.439	Scleropages_formosus
ENSJJAG00000013113	Polr1a	100	65.629	ENSSMAG00000014342	polr1a	100	65.545	Scophthalmus_maximus
ENSJJAG00000013113	Polr1a	100	67.015	ENSSDUG00000014631	polr1a	100	66.167	Seriola_dumerili
ENSJJAG00000013113	Polr1a	100	65.114	ENSSLDG00000024095	polr1a	100	67.358	Seriola_lalandi_dorsalis
ENSJJAG00000013113	Polr1a	74	94.681	ENSSARG00000003136	-	74	94.681	Sorex_araneus
ENSJJAG00000013113	Polr1a	95	75.409	ENSSPUG00000004215	POLR1A	99	75.445	Sphenodon_punctatus
ENSJJAG00000013113	Polr1a	65	70.964	ENSSPAG00000016341	polr1a	95	70.964	Stegastes_partitus
ENSJJAG00000013113	Polr1a	83	88.593	ENSSSCG00000008226	POLR1A	99	88.561	Sus_scrofa
ENSJJAG00000013113	Polr1a	99	70.112	ENSTGUG00000010704	POLR1A	100	69.670	Taeniopygia_guttata
ENSJJAG00000013113	Polr1a	100	63.158	ENSTRUG00000002210	polr1a	99	62.680	Takifugu_rubripes
ENSJJAG00000013113	Polr1a	100	59.665	ENSTNIG00000010116	polr1a	100	59.608	Tetraodon_nigroviridis
ENSJJAG00000013113	Polr1a	74	96.460	ENSTBEG00000008646	POLR1A	74	96.460	Tupaia_belangeri
ENSJJAG00000013113	Polr1a	100	83.575	ENSTTRG00000008597	POLR1A	100	83.227	Tursiops_truncatus
ENSJJAG00000013113	Polr1a	69	87.658	ENSUAMG00000012158	-	94	87.658	Ursus_americanus
ENSJJAG00000013113	Polr1a	100	87.224	ENSUMAG00000006700	POLR1A	100	87.224	Ursus_maritimus
ENSJJAG00000013113	Polr1a	100	87.979	ENSVVUG00000001245	POLR1A	100	87.979	Vulpes_vulpes
ENSJJAG00000013113	Polr1a	100	67.855	ENSXETG00000001952	polr1a	100	69.204	Xenopus_tropicalis
ENSJJAG00000013113	Polr1a	100	65.177	ENSXMAG00000004032	polr1a	100	65.391	Xiphophorus_maculatus