EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSJJAG00000014605 (Gene tree)
Gene ID: 101615414
Gene Symbol: -
Alias: -
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Jaculus_jaculus
Status: putative
Strand: Minus strand
Length: 15393 bases
Position: chrJH725606.1:2112499-2127891
Accession: 101615414
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSJJAP00000011217	LSM	PF01423.22	1.7e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSJJAT00000017688	-	587	XM_004671509	ENSJJAP00000011217	133 (aa)	XP_004671566	UPI00033348AC

Gene Model

Click here to download ENSJJAG00000014605's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSJJAG00000014605's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSJJAG00000014605	-	65	34.091	ENSJJAG00000009031	Lsm8	91	34.091

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSJJAG00000014605	-	100	98.496	ENSG00000175324	LSM1	100	98.496	Homo_sapiens
ENSJJAG00000014605	-	100	84.962	ENSAPOG00000010833	lsm1	100	84.962	Acanthochromis_polyacanthus
ENSJJAG00000014605	-	100	98.496	ENSAMEG00000011141	LSM1	100	98.496	Ailuropoda_melanoleuca
ENSJJAG00000014605	-	58	92.208	ENSACIG00000019593	lsm1	64	92.208	Amphilophus_citrinellus
ENSJJAG00000014605	-	100	84.962	ENSAOCG00000017096	lsm1	100	84.962	Amphiprion_ocellaris
ENSJJAG00000014605	-	100	84.962	ENSAOCG00000017997	-	100	84.962	Amphiprion_ocellaris
ENSJJAG00000014605	-	100	84.962	ENSAPEG00000011669	lsm1	100	84.962	Amphiprion_percula
ENSJJAG00000014605	-	100	83.459	ENSATEG00000022266	lsm1	100	83.459	Anabas_testudineus
ENSJJAG00000014605	-	100	98.496	ENSANAG00000027785	LSM1	100	98.496	Aotus_nancymaae
ENSJJAG00000014605	-	100	83.459	ENSACLG00000011400	lsm1	100	83.459	Astatotilapia_calliptera
ENSJJAG00000014605	-	100	84.962	ENSAMXG00000005441	lsm1	100	84.962	Astyanax_mexicanus
ENSJJAG00000014605	-	100	97.744	ENSBTAG00000001612	LSM1	100	97.744	Bos_taurus
ENSJJAG00000014605	-	70	58.065	WBGene00003076	lsm-1	73	58.065	Caenorhabditis_elegans
ENSJJAG00000014605	-	100	97.744	ENSCJAG00000048015	LSM1	100	97.744	Callithrix_jacchus
ENSJJAG00000014605	-	100	98.496	ENSCAFG00000006113	LSM1	100	98.496	Canis_familiaris
ENSJJAG00000014605	-	100	98.496	ENSCAFG00020001822	LSM1	100	98.496	Canis_lupus_dingo
ENSJJAG00000014605	-	100	98.496	ENSCHIG00000013194	LSM1	100	98.496	Capra_hircus
ENSJJAG00000014605	-	100	98.496	ENSTSYG00000010394	LSM1	100	98.496	Carlito_syrichta
ENSJJAG00000014605	-	100	98.496	ENSCPOG00000032671	LSM1	100	98.496	Cavia_porcellus
ENSJJAG00000014605	-	100	98.496	ENSCCAG00000037171	LSM1	100	98.496	Cebus_capucinus
ENSJJAG00000014605	-	100	98.496	ENSCATG00000020377	LSM1	100	98.496	Cercocebus_atys
ENSJJAG00000014605	-	100	96.992	ENSCLAG00000001137	LSM1	100	96.992	Chinchilla_lanigera
ENSJJAG00000014605	-	100	98.496	ENSCSAG00000015485	LSM1	100	98.496	Chlorocebus_sabaeus
ENSJJAG00000014605	-	100	97.744	ENSCHOG00000006030	LSM1	100	97.744	Choloepus_hoffmanni
ENSJJAG00000014605	-	95	87.402	ENSCPBG00000006569	LSM1	86	87.402	Chrysemys_picta_bellii
ENSJJAG00000014605	-	99	67.424	ENSCING00000013536	-	99	67.424	Ciona_intestinalis
ENSJJAG00000014605	-	100	98.496	ENSCANG00000019173	LSM1	100	98.496	Colobus_angolensis_palliatus
ENSJJAG00000014605	-	100	97.744	ENSCGRG00001024560	-	100	97.744	Cricetulus_griseus_chok1gshd
ENSJJAG00000014605	-	80	81.081	ENSCGRG00001002259	-	97	81.081	Cricetulus_griseus_chok1gshd
ENSJJAG00000014605	-	80	81.081	ENSCGRG00000013603	-	97	81.081	Cricetulus_griseus_crigri
ENSJJAG00000014605	-	100	97.744	ENSCGRG00000006554	-	100	97.744	Cricetulus_griseus_crigri
ENSJJAG00000014605	-	100	82.707	ENSCSEG00000010570	lsm1	92	82.707	Cynoglossus_semilaevis
ENSJJAG00000014605	-	100	81.955	ENSCSEG00000008319	lsm1	92	81.955	Cynoglossus_semilaevis
ENSJJAG00000014605	-	100	82.707	ENSCVAG00000003871	lsm1	100	82.707	Cyprinodon_variegatus
ENSJJAG00000014605	-	100	84.962	ENSDARG00000043177	lsm1	100	84.962	Danio_rerio
ENSJJAG00000014605	-	100	97.744	ENSDNOG00000032911	-	100	97.744	Dasypus_novemcinctus
ENSJJAG00000014605	-	89	78.151	ENSDNOG00000046620	-	100	78.151	Dasypus_novemcinctus
ENSJJAG00000014605	-	100	92.481	ENSDNOG00000030989	-	100	92.481	Dasypus_novemcinctus
ENSJJAG00000014605	-	100	98.496	ENSDNOG00000046387	-	100	98.496	Dasypus_novemcinctus
ENSJJAG00000014605	-	100	98.496	ENSDORG00000028172	Lsm1	100	98.496	Dipodomys_ordii
ENSJJAG00000014605	-	93	63.710	FBgn0261067	LSm1	91	63.710	Drosophila_melanogaster
ENSJJAG00000014605	-	100	96.992	ENSEASG00005016677	LSM1	100	96.992	Equus_asinus_asinus
ENSJJAG00000014605	-	100	96.992	ENSECAG00000010461	LSM1	100	96.992	Equus_caballus
ENSJJAG00000014605	-	100	69.173	ENSEEUG00000015181	LSM1	100	69.173	Erinaceus_europaeus
ENSJJAG00000014605	-	100	86.466	ENSELUG00000002322	lsm1	100	86.466	Esox_lucius
ENSJJAG00000014605	-	100	84.211	ENSELUG00000023374	lsm1	100	84.211	Esox_lucius
ENSJJAG00000014605	-	100	98.496	ENSFCAG00000039335	LSM1	100	98.496	Felis_catus
ENSJJAG00000014605	-	89	93.220	ENSFALG00000006723	LSM1	100	93.220	Ficedula_albicollis
ENSJJAG00000014605	-	100	98.496	ENSFDAG00000007658	LSM1	100	98.496	Fukomys_damarensis
ENSJJAG00000014605	-	100	82.707	ENSFHEG00000009556	lsm1	100	82.707	Fundulus_heteroclitus
ENSJJAG00000014605	-	100	82.707	ENSGMOG00000016651	lsm1	98	82.707	Gadus_morhua
ENSJJAG00000014605	-	100	91.729	ENSGALG00000003245	LSM1	100	91.729	Gallus_gallus
ENSJJAG00000014605	-	100	82.707	ENSGAFG00000011355	lsm1	100	82.707	Gambusia_affinis
ENSJJAG00000014605	-	100	83.459	ENSGACG00000011763	lsm1	98	83.459	Gasterosteus_aculeatus
ENSJJAG00000014605	-	100	93.985	ENSGAGG00000024065	LSM1	100	93.985	Gopherus_agassizii
ENSJJAG00000014605	-	100	98.496	ENSGGOG00000022658	LSM1	100	98.496	Gorilla_gorilla
ENSJJAG00000014605	-	100	83.459	ENSHBUG00000010897	lsm1	100	83.459	Haplochromis_burtoni
ENSJJAG00000014605	-	100	78.195	ENSHGLG00000017574	-	100	78.195	Heterocephalus_glaber_female
ENSJJAG00000014605	-	100	98.496	ENSHGLG00000005711	LSM1	100	98.496	Heterocephalus_glaber_female
ENSJJAG00000014605	-	100	98.496	ENSHGLG00100017660	LSM1	100	98.496	Heterocephalus_glaber_male
ENSJJAG00000014605	-	100	78.195	ENSHGLG00100012152	-	100	78.195	Heterocephalus_glaber_male
ENSJJAG00000014605	-	100	83.459	ENSHCOG00000017233	lsm1	100	83.459	Hippocampus_comes
ENSJJAG00000014605	-	100	83.459	ENSIPUG00000002312	LSM1	100	83.459	Ictalurus_punctatus
ENSJJAG00000014605	-	58	100.000	ENSSTOG00000026870	LSM1	94	100.000	Ictidomys_tridecemlineatus
ENSJJAG00000014605	-	100	83.459	ENSKMAG00000003016	lsm1	100	83.459	Kryptolebias_marmoratus
ENSJJAG00000014605	-	100	83.459	ENSLBEG00000022352	lsm1	100	83.459	Labrus_bergylta
ENSJJAG00000014605	-	89	89.831	ENSLACG00000010947	LSM1	98	89.831	Latimeria_chalumnae
ENSJJAG00000014605	-	100	93.985	ENSLOCG00000015149	lsm1	100	93.985	Lepisosteus_oculatus
ENSJJAG00000014605	-	100	98.496	ENSLAFG00000003534	LSM1	100	98.496	Loxodonta_africana
ENSJJAG00000014605	-	100	98.496	ENSMFAG00000032661	LSM1	100	98.496	Macaca_fascicularis
ENSJJAG00000014605	-	100	98.496	ENSMLEG00000034535	LSM1	100	98.496	Mandrillus_leucophaeus
ENSJJAG00000014605	-	100	83.459	ENSMAMG00000007464	lsm1	100	83.459	Mastacembelus_armatus
ENSJJAG00000014605	-	100	83.459	ENSMZEG00005010321	lsm1	100	83.459	Maylandia_zebra
ENSJJAG00000014605	-	100	91.729	ENSMGAG00000002125	LSM1	100	91.729	Meleagris_gallopavo
ENSJJAG00000014605	-	100	97.744	ENSMICG00000030726	LSM1	100	97.744	Microcebus_murinus
ENSJJAG00000014605	-	100	97.744	ENSMOCG00000022817	Lsm1	100	97.744	Microtus_ochrogaster
ENSJJAG00000014605	-	100	84.211	ENSMMOG00000015466	lsm1	100	84.211	Mola_mola
ENSJJAG00000014605	-	100	96.241	ENSMODG00000010732	-	100	96.241	Monodelphis_domestica
ENSJJAG00000014605	-	58	92.208	ENSMALG00000001478	lsm1	82	92.208	Monopterus_albus
ENSJJAG00000014605	-	100	96.241	MGP_CAROLIEiJ_G0030930	Lsm1	100	96.241	Mus_caroli
ENSJJAG00000014605	-	100	96.241	ENSMUSG00000037296	Lsm1	100	96.241	Mus_musculus
ENSJJAG00000014605	-	100	96.241	MGP_PahariEiJ_G0021400	Lsm1	100	96.241	Mus_pahari
ENSJJAG00000014605	-	100	96.241	MGP_SPRETEiJ_G0032049	Lsm1	100	96.241	Mus_spretus
ENSJJAG00000014605	-	100	97.744	ENSMPUG00000009883	LSM1	100	97.744	Mustela_putorius_furo
ENSJJAG00000014605	-	100	97.744	ENSMLUG00000003734	LSM1	100	97.744	Myotis_lucifugus
ENSJJAG00000014605	-	100	97.744	ENSNGAG00000003753	Lsm1	100	97.744	Nannospalax_galili
ENSJJAG00000014605	-	58	92.208	ENSNBRG00000017370	lsm1	66	92.208	Neolamprologus_brichardi
ENSJJAG00000014605	-	100	98.496	ENSNLEG00000029390	LSM1	100	98.496	Nomascus_leucogenys
ENSJJAG00000014605	-	100	96.241	ENSMEUG00000014077	LSM1	100	96.241	Notamacropus_eugenii
ENSJJAG00000014605	-	88	92.308	ENSOPRG00000000333	LSM1	100	92.308	Ochotona_princeps
ENSJJAG00000014605	-	100	98.496	ENSODEG00000004834	LSM1	100	98.496	Octodon_degus
ENSJJAG00000014605	-	100	83.459	ENSONIG00000010782	lsm1	100	83.459	Oreochromis_niloticus
ENSJJAG00000014605	-	100	95.489	ENSOANG00000003256	LSM1	100	95.489	Ornithorhynchus_anatinus
ENSJJAG00000014605	-	100	98.496	ENSOCUG00000015399	LSM1	100	98.496	Oryctolagus_cuniculus
ENSJJAG00000014605	-	100	84.962	ENSORLG00000030288	lsm1	100	84.962	Oryzias_latipes
ENSJJAG00000014605	-	100	84.962	ENSORLG00020003941	lsm1	100	84.962	Oryzias_latipes_hni
ENSJJAG00000014605	-	100	83.459	ENSORLG00020006213	-	86	83.459	Oryzias_latipes_hni
ENSJJAG00000014605	-	100	84.962	ENSORLG00015018350	lsm1	100	84.962	Oryzias_latipes_hsok
ENSJJAG00000014605	-	100	83.459	ENSOMEG00000012454	lsm1	100	83.459	Oryzias_melastigma
ENSJJAG00000014605	-	100	98.496	ENSOGAG00000015161	LSM1	100	98.496	Otolemur_garnettii
ENSJJAG00000014605	-	100	98.496	ENSOARG00000001317	LSM1	100	98.496	Ovis_aries
ENSJJAG00000014605	-	100	98.496	ENSPPAG00000032279	LSM1	100	98.496	Pan_paniscus
ENSJJAG00000014605	-	100	98.496	ENSPPRG00000014172	-	100	98.496	Panthera_pardus
ENSJJAG00000014605	-	100	98.496	ENSPTIG00000010289	LSM1	100	98.496	Panthera_tigris_altaica
ENSJJAG00000014605	-	100	98.496	ENSPTRG00000020169	LSM1	100	98.496	Pan_troglodytes
ENSJJAG00000014605	-	100	98.496	ENSPANG00000008814	LSM1	100	98.496	Papio_anubis
ENSJJAG00000014605	-	100	89.474	ENSPKIG00000001839	lsm1	100	89.474	Paramormyrops_kingsleyae
ENSJJAG00000014605	-	100	81.955	ENSPKIG00000019409	LSM1	99	81.955	Paramormyrops_kingsleyae
ENSJJAG00000014605	-	98	87.692	ENSPSIG00000012563	LSM1	99	87.692	Pelodiscus_sinensis
ENSJJAG00000014605	-	58	92.208	ENSPMGG00000022999	lsm1	73	92.208	Periophthalmus_magnuspinnatus
ENSJJAG00000014605	-	85	80.531	ENSPMAG00000002671	lsm1	100	80.531	Petromyzon_marinus
ENSJJAG00000014605	-	100	94.737	ENSPCIG00000008880	LSM1	100	94.737	Phascolarctos_cinereus
ENSJJAG00000014605	-	100	82.707	ENSPFOG00000016029	lsm1	100	82.707	Poecilia_formosa
ENSJJAG00000014605	-	100	82.707	ENSPLAG00000007879	lsm1	100	82.707	Poecilia_latipinna
ENSJJAG00000014605	-	100	82.707	ENSPMEG00000023550	lsm1	100	82.707	Poecilia_mexicana
ENSJJAG00000014605	-	100	82.707	ENSPREG00000009574	lsm1	100	82.707	Poecilia_reticulata
ENSJJAG00000014605	-	100	98.496	ENSPPYG00000018521	LSM1	100	98.496	Pongo_abelii
ENSJJAG00000014605	-	100	98.496	ENSPCOG00000020901	-	100	98.496	Propithecus_coquereli
ENSJJAG00000014605	-	100	98.496	ENSPVAG00000006016	LSM1	100	98.496	Pteropus_vampyrus
ENSJJAG00000014605	-	100	83.459	ENSPNYG00000018067	lsm1	100	83.459	Pundamilia_nyererei
ENSJJAG00000014605	-	100	84.211	ENSPNAG00000013707	lsm1	100	84.211	Pygocentrus_nattereri
ENSJJAG00000014605	-	100	96.241	ENSRNOG00000015375	Lsm1	100	96.241	Rattus_norvegicus
ENSJJAG00000014605	-	100	98.496	ENSRBIG00000027449	LSM1	100	98.496	Rhinopithecus_bieti
ENSJJAG00000014605	-	100	98.496	ENSRROG00000036074	LSM1	100	98.496	Rhinopithecus_roxellana
ENSJJAG00000014605	-	100	96.241	ENSSHAG00000017260	LSM1	100	96.241	Sarcophilus_harrisii
ENSJJAG00000014605	-	100	90.977	ENSSFOG00015019528	lsm1	100	90.977	Scleropages_formosus
ENSJJAG00000014605	-	100	83.459	ENSSMAG00000004930	lsm1	100	83.459	Scophthalmus_maximus
ENSJJAG00000014605	-	100	83.459	ENSSDUG00000021823	lsm1	100	83.459	Seriola_dumerili
ENSJJAG00000014605	-	100	83.459	ENSSLDG00000012154	lsm1	100	83.459	Seriola_lalandi_dorsalis
ENSJJAG00000014605	-	100	93.985	ENSSPUG00000014878	LSM1	100	93.985	Sphenodon_punctatus
ENSJJAG00000014605	-	100	84.211	ENSSPAG00000020548	lsm1	100	84.211	Stegastes_partitus
ENSJJAG00000014605	-	100	96.992	ENSSSCG00000039058	LSM1	100	96.992	Sus_scrofa
ENSJJAG00000014605	-	100	93.233	ENSTGUG00000004793	LSM1	100	93.233	Taeniopygia_guttata
ENSJJAG00000014605	-	100	85.714	ENSTRUG00000025239	lsm1	100	85.714	Takifugu_rubripes
ENSJJAG00000014605	-	100	85.714	ENSTNIG00000004055	lsm1	100	85.714	Tetraodon_nigroviridis
ENSJJAG00000014605	-	88	97.436	ENSTBEG00000015884	LSM1	100	97.436	Tupaia_belangeri
ENSJJAG00000014605	-	100	98.496	ENSTTRG00000004482	LSM1	100	98.496	Tursiops_truncatus
ENSJJAG00000014605	-	100	98.496	ENSUAMG00000004103	LSM1	100	98.496	Ursus_americanus
ENSJJAG00000014605	-	100	98.496	ENSUMAG00000009132	LSM1	100	98.496	Ursus_maritimus
ENSJJAG00000014605	-	58	98.701	ENSVPAG00000011593	LSM1	100	98.701	Vicugna_pacos
ENSJJAG00000014605	-	65	69.767	ENSVVUG00000014880	-	91	69.767	Vulpes_vulpes
ENSJJAG00000014605	-	100	98.496	ENSVVUG00000020191	LSM1	100	98.496	Vulpes_vulpes
ENSJJAG00000014605	-	100	91.241	ENSXETG00000009004	lsm1	100	91.241	Xenopus_tropicalis
ENSJJAG00000014605	-	100	81.955	ENSXCOG00000015631	lsm1	100	81.955	Xiphophorus_couchianus
ENSJJAG00000014605	-	100	81.955	ENSXMAG00000026637	lsm1	100	81.955	Xiphophorus_maculatus