EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSJJAG00000014647 (Gene tree)
Gene ID
101593943
Gene Symbol
Cpsf6
Alias
4733401N12Rik|CFIM68|HPBRII-4|HPBRII-7
Full Name
cleavage and polyadenylation specific factor 6
Gene Type
protein_coding
Species
Jaculus_jaculus
Status
putative
Strand
Plus strand
Length
24139 bases
Position
chrJH725438.1:20940026-20964164
Accession
101593943
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSJJAP00000011282RRM_1PF00076.227.4e-0711
ENSJJAP00000011286RRM_1PF00076.228.1e-0711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSJJAT00000017753-1605-ENSJJAP00000011282534 (aa)--
ENSJJAT00000017757-2141XM_012948488ENSJJAP00000011286568 (aa)XP_012803942UPI0001771DAF
Gene Model
Click here to download ENSJJAG00000014647's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSJJAG00000014647's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSJJAG00000014647Cpsf66651.795ENSJJAG00000019390Cpsf77358.857
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSJJAG00000014647Cpsf6100100.000ENSG00000111605CPSF697100.000Homo_sapiens
ENSJJAG00000014647Cpsf66857.246ENSG00000149532CPSF79057.471Homo_sapiens
ENSJJAG00000014647Cpsf610099.824ENSAMEG00000011781CPSF69799.824Ailuropoda_melanoleuca
ENSJJAG00000014647Cpsf66240.212ENSAOCG00000012357CPSF76842.593Amphiprion_ocellaris
ENSJJAG00000014647Cpsf6100100.000ENSANAG00000019240CPSF699100.000Aotus_nancymaae
ENSJJAG00000014647Cpsf66346.766ENSANAG00000024635CPSF76753.039Aotus_nancymaae
ENSJJAG00000014647Cpsf66090.419ENSAMXG00000016745CPSF67090.303Astyanax_mexicanus
ENSJJAG00000014647Cpsf66351.795ENSBTAG00000015263CPSF76758.286Bos_taurus
ENSJJAG00000014647Cpsf610099.824ENSBTAG00000007323CPSF69799.824Bos_taurus
ENSJJAG00000014647Cpsf67548.901ENSCJAG00000019282CPSF77957.714Callithrix_jacchus
ENSJJAG00000014647Cpsf610099.824ENSCJAG00000001798CPSF69799.824Callithrix_jacchus
ENSJJAG00000014647Cpsf66351.795ENSCAFG00000016152CPSF76758.857Canis_familiaris
ENSJJAG00000014647Cpsf6100100.000ENSCAFG00000000424CPSF699100.000Canis_familiaris
ENSJJAG00000014647Cpsf6100100.000ENSCAFG00020016950CPSF697100.000Canis_lupus_dingo
ENSJJAG00000014647Cpsf66351.795ENSCAFG00020012753CPSF76758.857Canis_lupus_dingo
ENSJJAG00000014647Cpsf610099.824ENSCHIG00000010792CPSF69799.824Capra_hircus
ENSJJAG00000014647Cpsf66351.795ENSCHIG00000014655CPSF76758.286Capra_hircus
ENSJJAG00000014647Cpsf66351.795ENSTSYG00000010138-6758.857Carlito_syrichta
ENSJJAG00000014647Cpsf6100100.000ENSTSYG00000008591CPSF699100.000Carlito_syrichta
ENSJJAG00000014647Cpsf66351.795ENSCAPG00000006384CPSF77058.857Cavia_aperea
ENSJJAG00000014647Cpsf610099.648ENSCPOG00000015201CPSF69799.648Cavia_porcellus
ENSJJAG00000014647Cpsf66351.795ENSCPOG00000009980CPSF76756.000Cavia_porcellus
ENSJJAG00000014647Cpsf66351.282ENSCCAG00000032367CPSF76758.286Cebus_capucinus
ENSJJAG00000014647Cpsf610099.824ENSCCAG00000028149CPSF69799.824Cebus_capucinus
ENSJJAG00000014647Cpsf6100100.000ENSCATG00000039288CPSF697100.000Cercocebus_atys
ENSJJAG00000014647Cpsf66651.282ENSCATG00000042801CPSF77358.286Cercocebus_atys
ENSJJAG00000014647Cpsf610099.648ENSCLAG00000010149CPSF610099.648Chinchilla_lanigera
ENSJJAG00000014647Cpsf66351.795ENSCLAG00000003174CPSF76755.429Chinchilla_lanigera
ENSJJAG00000014647Cpsf6100100.000ENSCSAG00000004232CPSF697100.000Chlorocebus_sabaeus
ENSJJAG00000014647Cpsf66651.282ENSCSAG00000006414CPSF77358.286Chlorocebus_sabaeus
ENSJJAG00000014647Cpsf69997.561ENSCPBG00000013322CPSF69797.561Chrysemys_picta_bellii
ENSJJAG00000014647Cpsf65559.441ENSCSAVG00000000161-5263.780Ciona_savignyi
ENSJJAG00000014647Cpsf6100100.000ENSCANG00000037294CPSF6100100.000Colobus_angolensis_palliatus
ENSJJAG00000014647Cpsf66352.308ENSCGRG00001020382Cpsf76859.429Cricetulus_griseus_chok1gshd
ENSJJAG00000014647Cpsf6100100.000ENSCGRG00001018082Cpsf69899.625Cricetulus_griseus_chok1gshd
ENSJJAG00000014647Cpsf6100100.000ENSCGRG00000016909Cpsf6100100.000Cricetulus_griseus_crigri
ENSJJAG00000014647Cpsf67051.152ENSCGRG00000017954Cpsf77359.429Cricetulus_griseus_crigri
ENSJJAG00000014647Cpsf65343.299ENSCSEG00000001956CPSF75747.552Cynoglossus_semilaevis
ENSJJAG00000014647Cpsf66636.842ENSCVAG00000007392CPSF76644.521Cyprinodon_variegatus
ENSJJAG00000014647Cpsf65073.978ENSCVAG00000014857cpsf65375.486Cyprinodon_variegatus
ENSJJAG00000014647Cpsf67549.451ENSDNOG00000018517CPSF77958.286Dasypus_novemcinctus
ENSJJAG00000014647Cpsf69999.437ENSDNOG00000015292CPSF69799.437Dasypus_novemcinctus
ENSJJAG00000014647Cpsf6100100.000ENSDORG00000002950Cpsf6100100.000Dipodomys_ordii
ENSJJAG00000014647Cpsf610092.606ENSETEG00000002097CPSF69792.606Echinops_telfairi
ENSJJAG00000014647Cpsf66352.041ENSETEG00000003765CPSF76757.310Echinops_telfairi
ENSJJAG00000014647Cpsf66351.795ENSEASG00005008196CPSF76758.857Equus_asinus_asinus
ENSJJAG00000014647Cpsf6100100.000ENSEASG00005008066CPSF697100.000Equus_asinus_asinus
ENSJJAG00000014647Cpsf67549.451ENSECAG00000018521CPSF78658.286Equus_caballus
ENSJJAG00000014647Cpsf6100100.000ENSECAG00000015988CPSF697100.000Equus_caballus
ENSJJAG00000014647Cpsf610099.296ENSEEUG00000015039CPSF610099.296Erinaceus_europaeus
ENSJJAG00000014647Cpsf67549.451ENSFCAG00000013677CPSF78658.286Felis_catus
ENSJJAG00000014647Cpsf610099.824ENSFCAG00000002855CPSF69799.824Felis_catus
ENSJJAG00000014647Cpsf69998.124ENSFALG00000010157CPSF610098.124Ficedula_albicollis
ENSJJAG00000014647Cpsf66256.452ENSFALG00000011927CPSF77158.140Ficedula_albicollis
ENSJJAG00000014647Cpsf610099.472ENSFDAG00000002281CPSF69799.472Fukomys_damarensis
ENSJJAG00000014647Cpsf69438.964ENSFDAG00000003919CPSF76756.000Fukomys_damarensis
ENSJJAG00000014647Cpsf65371.053ENSFHEG00000019693cpsf65170.307Fundulus_heteroclitus
ENSJJAG00000014647Cpsf65191.736ENSGMOG00000012951cpsf65093.388Gadus_morhua
ENSJJAG00000014647Cpsf66352.850ENSGALG00000040962CPSF75958.960Gallus_gallus
ENSJJAG00000014647Cpsf69997.561ENSGAGG00000010228CPSF69797.561Gopherus_agassizii
ENSJJAG00000014647Cpsf610099.824ENSGGOG00000008211CPSF69799.824Gorilla_gorilla
ENSJJAG00000014647Cpsf610099.472ENSHGLG00000000792CPSF69799.472Heterocephalus_glaber_female
ENSJJAG00000014647Cpsf66652.308ENSHGLG00000019090-7356.000Heterocephalus_glaber_female
ENSJJAG00000014647Cpsf66652.308ENSHGLG00100013933-7456.000Heterocephalus_glaber_male
ENSJJAG00000014647Cpsf610099.472ENSHGLG00100013861CPSF610099.624Heterocephalus_glaber_male
ENSJJAG00000014647Cpsf6100100.000ENSSTOG00000014133CPSF610099.812Ictidomys_tridecemlineatus
ENSJJAG00000014647Cpsf66351.795ENSSTOG00000007708CPSF76758.857Ictidomys_tridecemlineatus
ENSJJAG00000014647Cpsf68140.331ENSLBEG00000000947CPSF78032.850Labrus_bergylta
ENSJJAG00000014647Cpsf66544.231ENSLACG00000005542CPSF76944.231Latimeria_chalumnae
ENSJJAG00000014647Cpsf66595.294ENSLOCG00000016190cpsf66395.294Lepisosteus_oculatus
ENSJJAG00000014647Cpsf69999.625ENSLAFG00000030413CPSF69799.625Loxodonta_africana
ENSJJAG00000014647Cpsf66352.308ENSLAFG00000032084CPSF76759.429Loxodonta_africana
ENSJJAG00000014647Cpsf610099.824ENSMFAG00000045318CPSF69799.824Macaca_fascicularis
ENSJJAG00000014647Cpsf66451.282ENSMFAG00000001401CPSF76958.286Macaca_fascicularis
ENSJJAG00000014647Cpsf66651.282ENSMMUG00000015280CPSF77358.286Macaca_mulatta
ENSJJAG00000014647Cpsf610099.824ENSMMUG00000002921CPSF69799.824Macaca_mulatta
ENSJJAG00000014647Cpsf66651.282ENSMNEG00000029585CPSF77358.286Macaca_nemestrina
ENSJJAG00000014647Cpsf610099.824ENSMNEG00000036311CPSF69799.824Macaca_nemestrina
ENSJJAG00000014647Cpsf6100100.000ENSMLEG00000003957CPSF6100100.000Mandrillus_leucophaeus
ENSJJAG00000014647Cpsf66451.282ENSMLEG00000031269CPSF76958.286Mandrillus_leucophaeus
ENSJJAG00000014647Cpsf69541.651ENSMGAG00000004876CPSF75961.446Meleagris_gallopavo
ENSJJAG00000014647Cpsf69995.301ENSMGAG00000010552CPSF69795.301Meleagris_gallopavo
ENSJJAG00000014647Cpsf66351.795ENSMAUG00000013020Cpsf76858.857Mesocricetus_auratus
ENSJJAG00000014647Cpsf6100100.000ENSMAUG00000013240Cpsf697100.000Mesocricetus_auratus
ENSJJAG00000014647Cpsf6100100.000ENSMICG00000007385-97100.000Microcebus_murinus
ENSJJAG00000014647Cpsf66351.795ENSMICG00000013788CPSF76758.857Microcebus_murinus
ENSJJAG00000014647Cpsf66351.795ENSMOCG00000000072Cpsf76858.857Microtus_ochrogaster
ENSJJAG00000014647Cpsf6100100.000ENSMOCG00000013982Cpsf697100.000Microtus_ochrogaster
ENSJJAG00000014647Cpsf69998.874ENSMODG00000007123CPSF69798.874Monodelphis_domestica
ENSJJAG00000014647Cpsf66352.792ENSMODG00000020364CPSF76857.386Monodelphis_domestica
ENSJJAG00000014647Cpsf67389.175ENSMALG00000014908cpsf67491.525Monopterus_albus
ENSJJAG00000014647Cpsf6100100.000MGP_CAROLIEiJ_G0015834Cpsf697100.000Mus_caroli
ENSJJAG00000014647Cpsf66351.795MGP_CAROLIEiJ_G0022690Cpsf76858.857Mus_caroli
ENSJJAG00000014647Cpsf610099.648ENSMUSG00000055531Cpsf69799.648Mus_musculus
ENSJJAG00000014647Cpsf66351.795ENSMUSG00000034820Cpsf76858.857Mus_musculus
ENSJJAG00000014647Cpsf68299.668MGP_PahariEiJ_G0031253Cpsf68399.054Mus_pahari
ENSJJAG00000014647Cpsf66351.795MGP_PahariEiJ_G0014184Cpsf76858.857Mus_pahari
ENSJJAG00000014647Cpsf66351.795MGP_SPRETEiJ_G0023604Cpsf76858.857Mus_spretus
ENSJJAG00000014647Cpsf610099.648MGP_SPRETEiJ_G0016657Cpsf69799.648Mus_spretus
ENSJJAG00000014647Cpsf66350.769ENSMPUG00000014163CPSF76657.714Mustela_putorius_furo
ENSJJAG00000014647Cpsf69997.749ENSMPUG00000017502CPSF69797.749Mustela_putorius_furo
ENSJJAG00000014647Cpsf69997.749ENSMLUG00000004172-9797.749Myotis_lucifugus
ENSJJAG00000014647Cpsf67284.783ENSMLUG00000023960-7684.324Myotis_lucifugus
ENSJJAG00000014647Cpsf66651.795ENSMLUG00000013278CPSF77358.857Myotis_lucifugus
ENSJJAG00000014647Cpsf67694.928ENSMLUG00000028728-8894.416Myotis_lucifugus
ENSJJAG00000014647Cpsf6100100.000ENSNGAG00000015901Cpsf697100.000Nannospalax_galili
ENSJJAG00000014647Cpsf66351.795ENSNGAG00000005031Cpsf76858.857Nannospalax_galili
ENSJJAG00000014647Cpsf66351.282ENSNLEG00000002529CPSF76158.286Nomascus_leucogenys
ENSJJAG00000014647Cpsf610099.649ENSNLEG00000003798CPSF69799.649Nomascus_leucogenys
ENSJJAG00000014647Cpsf66354.082ENSMEUG00000002261CPSF76758.721Notamacropus_eugenii
ENSJJAG00000014647Cpsf610096.479ENSMEUG00000015041CPSF69696.479Notamacropus_eugenii
ENSJJAG00000014647Cpsf610099.472ENSOPRG00000005199CPSF610099.472Ochotona_princeps
ENSJJAG00000014647Cpsf66349.495ENSODEG00000002610CPSF76755.618Octodon_degus
ENSJJAG00000014647Cpsf69997.749ENSODEG00000018399-9797.749Octodon_degus
ENSJJAG00000014647Cpsf67782.443ENSODEG00000007109-6680.576Octodon_degus
ENSJJAG00000014647Cpsf67799.194ENSODEG00000004418-9098.795Octodon_degus
ENSJJAG00000014647Cpsf67484.231ENSONIG00000011702cpsf69180.556Oreochromis_niloticus
ENSJJAG00000014647Cpsf69481.076ENSOANG00000005944CPSF65086.792Ornithorhynchus_anatinus
ENSJJAG00000014647Cpsf69939.746ENSOCUG00000024726CPSF76758.286Oryctolagus_cuniculus
ENSJJAG00000014647Cpsf6100100.000ENSOCUG00000013505CPSF697100.000Oryctolagus_cuniculus
ENSJJAG00000014647Cpsf69481.854ENSORLG00000013893cpsf69171.429Oryzias_latipes
ENSJJAG00000014647Cpsf67435.193ENSORLG00000006495CPSF75549.558Oryzias_latipes
ENSJJAG00000014647Cpsf69481.854ENSORLG00020016593cpsf69171.429Oryzias_latipes_hni
ENSJJAG00000014647Cpsf67335.345ENSORLG00020012657CPSF75549.558Oryzias_latipes_hni
ENSJJAG00000014647Cpsf69481.854ENSORLG00015015558cpsf69171.429Oryzias_latipes_hsok
ENSJJAG00000014647Cpsf67338.028ENSOMEG00000000539CPSF77037.267Oryzias_melastigma
ENSJJAG00000014647Cpsf69997.373ENSOGAG00000031988CPSF610097.373Otolemur_garnettii
ENSJJAG00000014647Cpsf66351.795ENSOGAG00000027958CPSF76258.857Otolemur_garnettii
ENSJJAG00000014647Cpsf610099.649ENSOARG00000020532CPSF610099.813Ovis_aries
ENSJJAG00000014647Cpsf66351.795ENSOARG00000012937CPSF76158.286Ovis_aries
ENSJJAG00000014647Cpsf66351.282ENSPPAG00000028232CPSF76958.286Pan_paniscus
ENSJJAG00000014647Cpsf610097.188ENSPPAG00000005301CPSF69897.188Pan_paniscus
ENSJJAG00000014647Cpsf610099.824ENSPPRG00000021620CPSF69799.824Panthera_pardus
ENSJJAG00000014647Cpsf66351.795ENSPPRG00000008538CPSF76758.857Panthera_pardus
ENSJJAG00000014647Cpsf69499.813ENSPTIG00000004079CPSF610099.813Panthera_tigris_altaica
ENSJJAG00000014647Cpsf66351.795ENSPTIG00000021699CPSF76758.857Panthera_tigris_altaica
ENSJJAG00000014647Cpsf66351.282ENSPTRG00000003742CPSF76958.286Pan_troglodytes
ENSJJAG00000014647Cpsf610099.824ENSPTRG00000005205CPSF69799.824Pan_troglodytes
ENSJJAG00000014647Cpsf6100100.000ENSPANG00000011641CPSF697100.000Papio_anubis
ENSJJAG00000014647Cpsf66451.282ENSPANG00000006037CPSF76958.286Papio_anubis
ENSJJAG00000014647Cpsf65948.023ENSPKIG00000018054CPSF77544.681Paramormyrops_kingsleyae
ENSJJAG00000014647Cpsf69481.349ENSPKIG00000003081-9181.312Paramormyrops_kingsleyae
ENSJJAG00000014647Cpsf65894.512ENSPSIG00000016360CPSF67694.512Pelodiscus_sinensis
ENSJJAG00000014647Cpsf66651.795ENSPEMG00000012648Cpsf77358.857Peromyscus_maniculatus_bairdii
ENSJJAG00000014647Cpsf610099.824ENSPEMG00000007973Cpsf610099.824Peromyscus_maniculatus_bairdii
ENSJJAG00000014647Cpsf610099.296ENSPCIG00000019063CPSF69799.296Phascolarctos_cinereus
ENSJJAG00000014647Cpsf66352.736ENSPCIG00000002551CPSF77956.284Phascolarctos_cinereus
ENSJJAG00000014647Cpsf68284.706ENSPFOG00000006990cpsf65381.853Poecilia_formosa
ENSJJAG00000014647Cpsf65077.323ENSPMEG00000001353cpsf65069.333Poecilia_mexicana
ENSJJAG00000014647Cpsf69999.437ENSPPYG00000004756CPSF69799.437Pongo_abelii
ENSJJAG00000014647Cpsf66351.282ENSPPYG00000003188CPSF76758.286Pongo_abelii
ENSJJAG00000014647Cpsf6100100.000ENSPCAG00000011574CPSF697100.000Procavia_capensis
ENSJJAG00000014647Cpsf66351.795ENSPCOG00000011976CPSF76758.857Propithecus_coquereli
ENSJJAG00000014647Cpsf610099.649ENSPCOG00000024384CPSF69799.649Propithecus_coquereli
ENSJJAG00000014647Cpsf66351.795ENSPVAG00000010675CPSF76758.857Pteropus_vampyrus
ENSJJAG00000014647Cpsf610099.472ENSPVAG00000015753CPSF69799.472Pteropus_vampyrus
ENSJJAG00000014647Cpsf65646.497ENSPNAG00000015073CPSF76847.879Pygocentrus_nattereri
ENSJJAG00000014647Cpsf69999.437ENSRNOG00000005927Cpsf69799.437Rattus_norvegicus
ENSJJAG00000014647Cpsf66651.282ENSRNOG00000020668Cpsf77358.721Rattus_norvegicus
ENSJJAG00000014647Cpsf67548.901ENSRBIG00000031429CPSF78657.714Rhinopithecus_bieti
ENSJJAG00000014647Cpsf610099.649ENSRBIG00000042827CPSF69799.649Rhinopithecus_bieti
ENSJJAG00000014647Cpsf66351.282ENSRROG00000045009CPSF76758.286Rhinopithecus_roxellana
ENSJJAG00000014647Cpsf610099.824ENSRROG00000042758CPSF69799.824Rhinopithecus_roxellana
ENSJJAG00000014647Cpsf610099.824ENSSBOG00000010652CPSF6100100.000Saimiri_boliviensis_boliviensis
ENSJJAG00000014647Cpsf66351.282ENSSBOG00000018431CPSF76758.286Saimiri_boliviensis_boliviensis
ENSJJAG00000014647Cpsf66351.269ENSSHAG00000011964CPSF76759.302Sarcophilus_harrisii
ENSJJAG00000014647Cpsf69478.416ENSSFOG00015001688CPSF67980.754Scleropages_formosus
ENSJJAG00000014647Cpsf66941.935ENSSFOG00015010288cpsf77340.659Scleropages_formosus
ENSJJAG00000014647Cpsf69482.772ENSSFOG00015015803CPSF69180.556Scleropages_formosus
ENSJJAG00000014647Cpsf69399.526ENSSARG00000006743CPSF69192.737Sorex_araneus
ENSJJAG00000014647Cpsf69491.182ENSSPUG00000001238CPSF69792.376Sphenodon_punctatus
ENSJJAG00000014647Cpsf66352.604ENSSPUG00000019344CPSF76956.977Sphenodon_punctatus
ENSJJAG00000014647Cpsf6100100.000ENSSSCG00000038031CPSF6100100.000Sus_scrofa
ENSJJAG00000014647Cpsf67549.451ENSSSCG00000013083CPSF77958.286Sus_scrofa
ENSJJAG00000014647Cpsf66054.444ENSTGUG00000006513CPSF76756.322Taeniopygia_guttata
ENSJJAG00000014647Cpsf66351.282ENSTTRG00000011085CPSF77058.857Tursiops_truncatus
ENSJJAG00000014647Cpsf69499.800ENSUAMG00000023492CPSF610099.800Ursus_americanus
ENSJJAG00000014647Cpsf66351.795ENSUAMG00000017809CPSF76758.857Ursus_americanus
ENSJJAG00000014647Cpsf66651.795ENSUMAG00000011825CPSF77358.857Ursus_maritimus
ENSJJAG00000014647Cpsf694100.000ENSUMAG00000020779CPSF6100100.000Ursus_maritimus
ENSJJAG00000014647Cpsf6100100.000ENSVPAG00000008469CPSF6100100.000Vicugna_pacos
ENSJJAG00000014647Cpsf67549.451ENSVVUG00000004939CPSF77958.286Vulpes_vulpes
ENSJJAG00000014647Cpsf694100.000ENSVVUG00000010156-100100.000Vulpes_vulpes
ENSJJAG00000014647Cpsf69640.530ENSXETG00000006715cpsf76253.571Xenopus_tropicalis

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