EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSJJAG00000015367 (Gene tree)
Gene ID: -
Gene Symbol: Smg6
Alias: -
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Jaculus_jaculus
Status: putative
Strand: Plus strand
Length: 161652 bases
Position: chrJH725542.1:4048196-4209847
Accession: 101593558
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSJJAP00000012300	EST1	PF10374.9	3.7e-14	1	1
ENSJJAP00000012300	EST1_DNA_bind	PF10373.9	2.5e-60	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSJJAT00000018784	-	3624	XM_004667845	ENSJJAP00000012300	1207 (aa)	XP_004667902	-

Gene Model

Click here to download ENSJJAG00000015367's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSJJAG00000015367's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSJJAG00000015367	Smg6	95	86.395	ENSG00000070366	SMG6	100	96.748	Homo_sapiens
ENSJJAG00000015367	Smg6	61	56.336	ENSAPOG00000019448	smg6	55	51.786	Acanthochromis_polyacanthus
ENSJJAG00000015367	Smg6	95	86.904	ENSAMEG00000007632	SMG6	79	88.839	Ailuropoda_melanoleuca
ENSJJAG00000015367	Smg6	63	56.281	ENSACIG00000012997	smg6	77	45.721	Amphilophus_citrinellus
ENSJJAG00000015367	Smg6	61	56.297	ENSAOCG00000002630	smg6	55	51.844	Amphiprion_ocellaris
ENSJJAG00000015367	Smg6	61	56.423	ENSAPEG00000019101	smg6	55	51.949	Amphiprion_percula
ENSJJAG00000015367	Smg6	75	51.016	ENSATEG00000006483	smg6	57	50.797	Anabas_testudineus
ENSJJAG00000015367	Smg6	95	54.384	ENSACAG00000011783	SMG6	89	56.397	Anolis_carolinensis
ENSJJAG00000015367	Smg6	95	86.135	ENSANAG00000035760	SMG6	79	88.046	Aotus_nancymaae
ENSJJAG00000015367	Smg6	61	55.752	ENSACLG00000005288	smg6	63	50.050	Astatotilapia_calliptera
ENSJJAG00000015367	Smg6	63	57.124	ENSAMXG00000017326	smg6	78	45.965	Astyanax_mexicanus
ENSJJAG00000015367	Smg6	95	86.470	ENSBTAG00000000267	SMG6	79	88.393	Bos_taurus
ENSJJAG00000015367	Smg6	95	86.395	ENSCJAG00000001820	SMG6	79	88.314	Callithrix_jacchus
ENSJJAG00000015367	Smg6	95	87.164	ENSCAFG00000019260	SMG6	79	89.107	Canis_familiaris
ENSJJAG00000015367	Smg6	95	87.164	ENSCAFG00020009770	SMG6	79	89.107	Canis_lupus_dingo
ENSJJAG00000015367	Smg6	95	86.123	ENSCHIG00000021998	SMG6	79	88.036	Capra_hircus
ENSJJAG00000015367	Smg6	95	86.049	ENSTSYG00000003406	SMG6	79	87.957	Carlito_syrichta
ENSJJAG00000015367	Smg6	82	86.014	ENSCAPG00000016197	SMG6	78	92.308	Cavia_aperea
ENSJJAG00000015367	Smg6	95	86.234	ENSCPOG00000014878	SMG6	79	88.146	Cavia_porcellus
ENSJJAG00000015367	Smg6	95	86.222	ENSCCAG00000035801	SMG6	79	88.136	Cebus_capucinus
ENSJJAG00000015367	Smg6	95	86.395	ENSCATG00000031956	SMG6	79	88.314	Cercocebus_atys
ENSJJAG00000015367	Smg6	95	88.128	ENSCLAG00000006748	SMG6	79	90.098	Chinchilla_lanigera
ENSJJAG00000015367	Smg6	95	86.742	ENSCSAG00000013800	SMG6	79	88.671	Chlorocebus_sabaeus
ENSJJAG00000015367	Smg6	67	98.507	ENSCHOG00000005024	-	73	98.507	Choloepus_hoffmanni
ENSJJAG00000015367	Smg6	95	67.121	ENSCPBG00000020369	SMG6	79	69.062	Chrysemys_picta_bellii
ENSJJAG00000015367	Smg6	93	86.299	ENSCANG00000031764	SMG6	78	88.268	Colobus_angolensis_palliatus
ENSJJAG00000015367	Smg6	64	90.372	ENSCGRG00001019595	Smg6	100	90.372	Cricetulus_griseus_chok1gshd
ENSJJAG00000015367	Smg6	93	85.027	ENSCGRG00000007782	Smg6	80	87.144	Cricetulus_griseus_crigri
ENSJJAG00000015367	Smg6	90	48.917	ENSCSEG00000012757	smg6	68	49.899	Cynoglossus_semilaevis
ENSJJAG00000015367	Smg6	62	54.047	ENSCVAG00000012789	smg6	66	50.473	Cyprinodon_variegatus
ENSJJAG00000015367	Smg6	95	43.987	ENSDARG00000100481	smg6	80	45.240	Danio_rerio
ENSJJAG00000015367	Smg6	95	86.482	ENSDNOG00000048283	SMG6	79	89.117	Dasypus_novemcinctus
ENSJJAG00000015367	Smg6	95	84.052	ENSDORG00000016614	Smg6	69	96.341	Dipodomys_ordii
ENSJJAG00000015367	Smg6	95	84.389	ENSETEG00000016790	SMG6	79	86.250	Echinops_telfairi
ENSJJAG00000015367	Smg6	95	87.424	ENSEASG00005009318	SMG6	78	89.375	Equus_asinus_asinus
ENSJJAG00000015367	Smg6	95	87.424	ENSECAG00000006519	SMG6	78	89.375	Equus_caballus
ENSJJAG00000015367	Smg6	95	73.872	ENSEEUG00000003493	SMG6	79	75.424	Erinaceus_europaeus
ENSJJAG00000015367	Smg6	63	54.945	ENSELUG00000005934	smg6	52	51.472	Esox_lucius
ENSJJAG00000015367	Smg6	95	88.031	ENSFCAG00000028817	SMG6	79	90.000	Felis_catus
ENSJJAG00000015367	Smg6	93	64.732	ENSFALG00000006538	SMG6	78	66.245	Ficedula_albicollis
ENSJJAG00000015367	Smg6	95	87.251	ENSFDAG00000015106	SMG6	79	89.196	Fukomys_damarensis
ENSJJAG00000015367	Smg6	75	49.794	ENSFHEG00000013282	smg6	55	51.380	Fundulus_heteroclitus
ENSJJAG00000015367	Smg6	95	65.336	ENSGALG00000003108	SMG6	85	67.017	Gallus_gallus
ENSJJAG00000015367	Smg6	76	48.744	ENSGAFG00000000379	smg6	54	50.738	Gambusia_affinis
ENSJJAG00000015367	Smg6	84	48.687	ENSGACG00000020521	smg6	77	49.759	Gasterosteus_aculeatus
ENSJJAG00000015367	Smg6	93	66.345	ENSGAGG00000025617	SMG6	79	68.321	Gopherus_agassizii
ENSJJAG00000015367	Smg6	95	87.348	ENSGGOG00000017156	SMG6	79	89.295	Gorilla_gorilla
ENSJJAG00000015367	Smg6	78	49.405	ENSHBUG00000021311	smg6	57	50.964	Haplochromis_burtoni
ENSJJAG00000015367	Smg6	95	86.332	ENSHGLG00000012882	SMG6	79	88.246	Heterocephalus_glaber_female
ENSJJAG00000015367	Smg6	95	86.419	ENSHGLG00100017815	SMG6	79	88.335	Heterocephalus_glaber_male
ENSJJAG00000015367	Smg6	61	56.063	ENSHCOG00000008761	smg6	58	57.278	Hippocampus_comes
ENSJJAG00000015367	Smg6	82	48.430	ENSIPUG00000012493	smg6	59	50.200	Ictalurus_punctatus
ENSJJAG00000015367	Smg6	95	89.081	ENSSTOG00000028127	SMG6	79	91.079	Ictidomys_tridecemlineatus
ENSJJAG00000015367	Smg6	79	49.228	ENSKMAG00000000279	smg6	58	50.503	Kryptolebias_marmoratus
ENSJJAG00000015367	Smg6	79	49.023	ENSLBEG00000002184	smg6	56	50.301	Labrus_bergylta
ENSJJAG00000015367	Smg6	65	56.479	ENSLACG00000000806	-	98	58.148	Latimeria_chalumnae
ENSJJAG00000015367	Smg6	65	59.556	ENSLOCG00000006448	smg6	78	49.782	Lepisosteus_oculatus
ENSJJAG00000015367	Smg6	95	86.308	ENSLAFG00000001261	SMG6	79	88.225	Loxodonta_africana
ENSJJAG00000015367	Smg6	95	86.915	ENSMFAG00000003394	SMG6	79	88.849	Macaca_fascicularis
ENSJJAG00000015367	Smg6	95	87.002	ENSMMUG00000023161	SMG6	79	88.938	Macaca_mulatta
ENSJJAG00000015367	Smg6	95	80.899	ENSMNEG00000044592	SMG6	78	82.651	Macaca_nemestrina
ENSJJAG00000015367	Smg6	92	83.333	ENSMLEG00000029353	SMG6	77	95.279	Mandrillus_leucophaeus
ENSJJAG00000015367	Smg6	62	57.731	ENSMAMG00000020119	smg6	61	52.275	Mastacembelus_armatus
ENSJJAG00000015367	Smg6	61	55.752	ENSMZEG00005024736	smg6	58	50.200	Maylandia_zebra
ENSJJAG00000015367	Smg6	86	64.911	ENSMGAG00000005401	-	99	64.911	Meleagris_gallopavo
ENSJJAG00000015367	Smg6	95	88.562	ENSMICG00000012913	SMG6	79	90.544	Microcebus_murinus
ENSJJAG00000015367	Smg6	95	42.673	ENSMMOG00000010883	smg6	81	43.988	Mola_mola
ENSJJAG00000015367	Smg6	95	80.121	ENSMODG00000010622	SMG6	79	81.851	Monodelphis_domestica
ENSJJAG00000015367	Smg6	62	56.965	ENSMALG00000001106	smg6	54	53.284	Monopterus_albus
ENSJJAG00000015367	Smg6	95	88.215	MGP_CAROLIEiJ_G0016729	Smg6	98	96.542	Mus_caroli
ENSJJAG00000015367	Smg6	95	88.562	ENSMUSG00000038290	Smg6	97	96.542	Mus_musculus
ENSJJAG00000015367	Smg6	95	87.868	MGP_PahariEiJ_G0017866	Smg6	98	96.542	Mus_pahari
ENSJJAG00000015367	Smg6	95	88.388	MGP_SPRETEiJ_G0017572	Smg6	98	96.830	Mus_spretus
ENSJJAG00000015367	Smg6	95	86.990	ENSMPUG00000013046	SMG6	79	88.929	Mustela_putorius_furo
ENSJJAG00000015367	Smg6	95	86.470	ENSMLUG00000005739	SMG6	79	88.393	Myotis_lucifugus
ENSJJAG00000015367	Smg6	94	89.025	ENSNGAG00000007287	Smg6	97	89.025	Nannospalax_galili
ENSJJAG00000015367	Smg6	79	48.202	ENSNBRG00000009511	smg6	72	44.777	Neolamprologus_brichardi
ENSJJAG00000015367	Smg6	93	86.182	ENSNLEG00000017171	SMG6	78	88.139	Nomascus_leucogenys
ENSJJAG00000015367	Smg6	93	75.510	ENSMEUG00000015804	SMG6	78	77.148	Notamacropus_eugenii
ENSJJAG00000015367	Smg6	52	89.140	ENSOPRG00000000579	SMG6	65	89.140	Ochotona_princeps
ENSJJAG00000015367	Smg6	95	78.411	ENSODEG00000008038	SMG6	84	94.012	Octodon_degus
ENSJJAG00000015367	Smg6	95	46.750	ENSONIG00000005594	smg6	78	48.302	Oreochromis_niloticus
ENSJJAG00000015367	Smg6	95	86.926	ENSOCUG00000013018	SMG6	79	89.127	Oryctolagus_cuniculus
ENSJJAG00000015367	Smg6	75	50.412	ENSORLG00000003317	smg6	55	52.063	Oryzias_latipes
ENSJJAG00000015367	Smg6	79	48.688	ENSORLG00020015343	smg6	58	50.200	Oryzias_latipes_hni
ENSJJAG00000015367	Smg6	79	48.882	ENSORLG00015020454	smg6	58	50.399	Oryzias_latipes_hsok
ENSJJAG00000015367	Smg6	79	47.674	ENSOMEG00000010838	smg6	59	48.902	Oryzias_melastigma
ENSJJAG00000015367	Smg6	95	87.792	ENSOGAG00000004483	SMG6	79	89.750	Otolemur_garnettii
ENSJJAG00000015367	Smg6	95	84.142	ENSOARG00000015076	SMG6	78	87.845	Ovis_aries
ENSJJAG00000015367	Smg6	95	87.262	ENSPPAG00000043296	SMG6	79	89.206	Pan_paniscus
ENSJJAG00000015367	Smg6	95	88.118	ENSPPRG00000014581	SMG6	79	90.089	Panthera_pardus
ENSJJAG00000015367	Smg6	92	88.025	ENSPTIG00000008925	SMG6	77	90.055	Panthera_tigris_altaica
ENSJJAG00000015367	Smg6	95	87.435	ENSPTRG00000008544	SMG6	79	89.384	Pan_troglodytes
ENSJJAG00000015367	Smg6	95	86.482	ENSPANG00000024588	SMG6	79	88.403	Papio_anubis
ENSJJAG00000015367	Smg6	93	66.754	ENSPSIG00000006660	SMG6	84	68.198	Pelodiscus_sinensis
ENSJJAG00000015367	Smg6	93	56.548	ENSPMGG00000000844	smg6	78	59.275	Periophthalmus_magnuspinnatus
ENSJJAG00000015367	Smg6	95	89.419	ENSPEMG00000020707	Smg6	79	91.429	Peromyscus_maniculatus_bairdii
ENSJJAG00000015367	Smg6	96	45.654	ENSPFOG00000012035	smg6	78	46.751	Poecilia_formosa
ENSJJAG00000015367	Smg6	76	48.943	ENSPLAG00000017660	smg6	55	50.211	Poecilia_latipinna
ENSJJAG00000015367	Smg6	63	53.771	ENSPMEG00000000258	smg6	54	50.581	Poecilia_mexicana
ENSJJAG00000015367	Smg6	76	49.496	ENSPREG00000010066	smg6	54	50.899	Poecilia_reticulata
ENSJJAG00000015367	Smg6	91	84.015	ENSPPYG00000007790	SMG6	78	83.393	Pongo_abelii
ENSJJAG00000015367	Smg6	95	80.936	ENSPCAG00000000552	SMG6	79	82.620	Procavia_capensis
ENSJJAG00000015367	Smg6	95	88.562	ENSPCOG00000020925	SMG6	79	90.544	Propithecus_coquereli
ENSJJAG00000015367	Smg6	78	100.000	ENSPVAG00000002159	SMG6	65	100.000	Pteropus_vampyrus
ENSJJAG00000015367	Smg6	61	57.997	ENSPNYG00000024151	smg6	63	51.423	Pundamilia_nyererei
ENSJJAG00000015367	Smg6	77	46.287	ENSPNAG00000015480	smg6	55	60.744	Pygocentrus_nattereri
ENSJJAG00000015367	Smg6	95	88.562	ENSRNOG00000003041	Smg6	97	97.695	Rattus_norvegicus
ENSJJAG00000015367	Smg6	95	86.828	ENSRBIG00000024746	SMG6	79	88.760	Rhinopithecus_bieti
ENSJJAG00000015367	Smg6	95	86.915	ENSRROG00000030423	SMG6	79	88.849	Rhinopithecus_roxellana
ENSJJAG00000015367	Smg6	95	85.962	ENSSBOG00000022518	SMG6	80	87.868	Saimiri_boliviensis_boliviensis
ENSJJAG00000015367	Smg6	93	79.805	ENSSHAG00000010045	SMG6	77	81.569	Sarcophilus_harrisii
ENSJJAG00000015367	Smg6	62	58.375	ENSSFOG00015005436	smg6	53	54.237	Scleropages_formosus
ENSJJAG00000015367	Smg6	75	52.037	ENSSMAG00000019777	smg6	54	53.145	Scophthalmus_maximus
ENSJJAG00000015367	Smg6	62	56.273	ENSSDUG00000016412	smg6	57	50.706	Seriola_dumerili
ENSJJAG00000015367	Smg6	62	56.273	ENSSLDG00000020747	smg6	61	50.806	Seriola_lalandi_dorsalis
ENSJJAG00000015367	Smg6	95	62.947	ENSSPUG00000007152	SMG6	78	64.330	Sphenodon_punctatus
ENSJJAG00000015367	Smg6	61	55.346	ENSSPAG00000015633	smg6	55	50.738	Stegastes_partitus
ENSJJAG00000015367	Smg6	95	86.222	ENSSSCG00000017826	SMG6	82	87.948	Sus_scrofa
ENSJJAG00000015367	Smg6	95	65.487	ENSTGUG00000005836	SMG6	79	67.022	Taeniopygia_guttata
ENSJJAG00000015367	Smg6	75	50.000	ENSTRUG00000000358	smg6	61	52.008	Takifugu_rubripes
ENSJJAG00000015367	Smg6	95	44.000	ENSTNIG00000016164	smg6	78	45.363	Tetraodon_nigroviridis
ENSJJAG00000015367	Smg6	95	81.889	ENSTBEG00000011424	SMG6	79	83.675	Tupaia_belangeri
ENSJJAG00000015367	Smg6	84	89.086	ENSTTRG00000001175	SMG6	70	95.291	Tursiops_truncatus
ENSJJAG00000015367	Smg6	95	87.598	ENSUAMG00000025152	SMG6	79	89.554	Ursus_americanus
ENSJJAG00000015367	Smg6	92	87.310	ENSUMAG00000009306	SMG6	78	89.319	Ursus_maritimus
ENSJJAG00000015367	Smg6	89	81.273	ENSVPAG00000000225	SMG6	76	81.944	Vicugna_pacos
ENSJJAG00000015367	Smg6	95	86.904	ENSVVUG00000021727	SMG6	79	88.839	Vulpes_vulpes
ENSJJAG00000015367	Smg6	92	53.718	ENSXETG00000023799	SMG6	78	54.651	Xenopus_tropicalis
ENSJJAG00000015367	Smg6	63	54.645	ENSXCOG00000009867	smg6	55	51.113	Xiphophorus_couchianus
ENSJJAG00000015367	Smg6	76	49.447	ENSXMAG00000010321	smg6	54	50.844	Xiphophorus_maculatus