EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSJJAG00000016165 (Gene tree)
Gene ID: 101594487
Gene Symbol: Ncl
Alias: B530004O11Rik|C23
Full Name: nucleolin
Gene Type: protein_coding
Species: Jaculus_jaculus
Status: putative
Strand: Minus strand
Length: 12406 bases
Position: chrJH725491.1:15212945-15225350
Accession: 101594487
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSJJAP00000013423	RRM_1	PF00076.22	2e-45	1	3
ENSJJAP00000013423	RRM_1	PF00076.22	2e-45	2	3
ENSJJAP00000013423	RRM_1	PF00076.22	2e-45	3	3
ENSJJAP00000013417	RRM_1	PF00076.22	2.1e-45	1	3
ENSJJAP00000013417	RRM_1	PF00076.22	2.1e-45	2	3
ENSJJAP00000013417	RRM_1	PF00076.22	2.1e-45	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSJJAT00000019913	-	2016	-	ENSJJAP00000013423	671 (aa)	-	-
ENSJJAT00000019907	-	2034	XM_004662953	ENSJJAP00000013417	677 (aa)	XP_004663010	-

Gene Model

Click here to download ENSJJAG00000016165's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSJJAG00000016165's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSJJAG00000016165	Ncl	93	79.726	ENSG00000115053	NCL	89	88.095	Homo_sapiens
ENSJJAG00000016165	Ncl	55	82.097	ENSAMEG00000016289	NCL	55	82.097	Ailuropoda_melanoleuca
ENSJJAG00000016165	Ncl	93	77.591	ENSANAG00000035814	-	55	82.864	Aotus_nancymaae
ENSJJAG00000016165	Ncl	99	64.897	ENSANAG00000024378	-	94	78.788	Aotus_nancymaae
ENSJJAG00000016165	Ncl	83	83.803	ENSBTAG00000050728	-	96	83.803	Bos_taurus
ENSJJAG00000016165	Ncl	69	84.507	ENSBTAG00000026909	-	84	84.507	Bos_taurus
ENSJJAG00000016165	Ncl	94	75.668	ENSBTAG00000016174	NCL	63	82.380	Bos_taurus
ENSJJAG00000016165	Ncl	90	79.412	ENSBTAG00000051320	-	74	81.102	Bos_taurus
ENSJJAG00000016165	Ncl	91	78.328	ENSCJAG00000013538	NCL	53	82.586	Callithrix_jacchus
ENSJJAG00000016165	Ncl	93	78.215	ENSCAFG00000011037	NCL	55	82.097	Canis_familiaris
ENSJJAG00000016165	Ncl	86	76.873	ENSCAFG00020023145	NCL	58	82.097	Canis_lupus_dingo
ENSJJAG00000016165	Ncl	87	76.290	ENSCHIG00000010894	-	66	79.271	Capra_hircus
ENSJJAG00000016165	Ncl	93	78.243	ENSCHIG00000021052	-	100	84.472	Capra_hircus
ENSJJAG00000016165	Ncl	91	57.862	ENSCHIG00000012143	-	75	68.930	Capra_hircus
ENSJJAG00000016165	Ncl	91	71.362	ENSCHIG00000026149	-	53	76.517	Capra_hircus
ENSJJAG00000016165	Ncl	91	76.888	ENSTSYG00000004355	-	53	81.794	Carlito_syrichta
ENSJJAG00000016165	Ncl	97	74.153	ENSTSYG00000029779	-	51	76.898	Carlito_syrichta
ENSJJAG00000016165	Ncl	90	68.760	ENSTSYG00000036886	-	74	76.316	Carlito_syrichta
ENSJJAG00000016165	Ncl	55	75.959	ENSCAPG00000009405	NCL	54	75.959	Cavia_aperea
ENSJJAG00000016165	Ncl	53	80.211	ENSCPOG00000001034	NCL	53	80.211	Cavia_porcellus
ENSJJAG00000016165	Ncl	87	87.429	ENSCCAG00000000551	-	69	87.006	Cebus_capucinus
ENSJJAG00000016165	Ncl	91	76.791	ENSCCAG00000021040	-	54	82.586	Cebus_capucinus
ENSJJAG00000016165	Ncl	91	79.037	ENSCATG00000037033	NCL	53	82.322	Cercocebus_atys
ENSJJAG00000016165	Ncl	93	74.661	ENSCLAG00000013080	NCL	55	81.074	Chinchilla_lanigera
ENSJJAG00000016165	Ncl	55	82.398	ENSCSAG00000006660	NCL	95	79.043	Chlorocebus_sabaeus
ENSJJAG00000016165	Ncl	61	65.668	ENSCHOG00000012860	NCL	78	68.435	Choloepus_hoffmanni
ENSJJAG00000016165	Ncl	91	82.663	ENSCGRG00001024315	-	53	85.979	Cricetulus_griseus_chok1gshd
ENSJJAG00000016165	Ncl	86	82.680	ENSCGRG00000017894	-	54	85.979	Cricetulus_griseus_crigri
ENSJJAG00000016165	Ncl	93	74.242	ENSDNOG00000010783	-	55	80.153	Dasypus_novemcinctus
ENSJJAG00000016165	Ncl	91	67.757	ENSDNOG00000046347	-	54	71.654	Dasypus_novemcinctus
ENSJJAG00000016165	Ncl	53	81.283	ENSDORG00000012513	-	54	80.952	Dipodomys_ordii
ENSJJAG00000016165	Ncl	51	74.359	ENSDORG00000023596	-	52	73.315	Dipodomys_ordii
ENSJJAG00000016165	Ncl	53	77.719	ENSETEG00000014756	-	86	77.573	Echinops_telfairi
ENSJJAG00000016165	Ncl	71	52.610	ENSETEG00000008553	-	79	56.604	Echinops_telfairi
ENSJJAG00000016165	Ncl	53	78.628	ENSETEG00000018937	-	62	76.082	Echinops_telfairi
ENSJJAG00000016165	Ncl	72	56.716	ENSETEG00000008139	-	89	56.742	Echinops_telfairi
ENSJJAG00000016165	Ncl	92	75.994	ENSEASG00005008488	NCL	86	87.302	Equus_asinus_asinus
ENSJJAG00000016165	Ncl	93	76.807	ENSECAG00000021868	NCL	54	81.841	Equus_caballus
ENSJJAG00000016165	Ncl	86	71.927	ENSEEUG00000005913	NCL	54	77.309	Erinaceus_europaeus
ENSJJAG00000016165	Ncl	93	78.550	ENSFCAG00000027622	NCL	55	82.353	Felis_catus
ENSJJAG00000016165	Ncl	93	76.818	ENSFDAG00000014291	NCL	55	82.097	Fukomys_damarensis
ENSJJAG00000016165	Ncl	93	79.573	ENSGGOG00000004300	NCL	94	83.152	Gorilla_gorilla
ENSJJAG00000016165	Ncl	53	75.000	ENSHGLG00000011069	-	55	74.868	Heterocephalus_glaber_female
ENSJJAG00000016165	Ncl	91	75.232	ENSHGLG00000002031	-	53	81.266	Heterocephalus_glaber_female
ENSJJAG00000016165	Ncl	91	61.146	ENSHGLG00100000745	-	59	74.536	Heterocephalus_glaber_male
ENSJJAG00000016165	Ncl	91	77.294	ENSHGLG00100014537	-	54	81.003	Heterocephalus_glaber_male
ENSJJAG00000016165	Ncl	91	65.415	ENSLAFG00000013061	NCL	56	70.604	Loxodonta_africana
ENSJJAG00000016165	Ncl	93	78.995	ENSMFAG00000040385	NCL	55	82.609	Macaca_fascicularis
ENSJJAG00000016165	Ncl	93	78.995	ENSMMUG00000018094	NCL	96	88.732	Macaca_mulatta
ENSJJAG00000016165	Ncl	93	77.573	ENSMNEG00000023839	NCL	96	87.786	Macaca_nemestrina
ENSJJAG00000016165	Ncl	91	78.882	ENSMLEG00000028935	NCL	53	82.322	Mandrillus_leucophaeus
ENSJJAG00000016165	Ncl	91	62.969	ENSMICG00000029975	-	85	80.851	Microcebus_murinus
ENSJJAG00000016165	Ncl	91	76.498	ENSMICG00000002538	-	53	81.794	Microcebus_murinus
ENSJJAG00000016165	Ncl	91	77.846	MGP_CAROLIEiJ_G0014362	Ncl	53	84.800	Mus_caroli
ENSJJAG00000016165	Ncl	91	78.154	ENSMUSG00000026234	Ncl	53	84.800	Mus_musculus
ENSJJAG00000016165	Ncl	91	78.681	MGP_PahariEiJ_G0027599	Ncl	53	85.067	Mus_pahari
ENSJJAG00000016165	Ncl	91	77.880	MGP_SPRETEiJ_G0015164	Ncl	53	84.800	Mus_spretus
ENSJJAG00000016165	Ncl	93	75.753	ENSMLUG00000014547	NCL	55	82.609	Myotis_lucifugus
ENSJJAG00000016165	Ncl	91	80.728	ENSNGAG00000002454	-	53	86.772	Nannospalax_galili
ENSJJAG00000016165	Ncl	53	74.659	ENSNGAG00000006188	-	54	74.387	Nannospalax_galili
ENSJJAG00000016165	Ncl	87	69.017	ENSNLEG00000014107	-	60	66.038	Nomascus_leucogenys
ENSJJAG00000016165	Ncl	91	64.465	ENSODEG00000002441	-	86	69.492	Octodon_degus
ENSJJAG00000016165	Ncl	80	75.597	ENSODEG00000002748	-	59	76.923	Octodon_degus
ENSJJAG00000016165	Ncl	91	71.783	ENSODEG00000003281	-	52	79.245	Octodon_degus
ENSJJAG00000016165	Ncl	93	68.203	ENSOCUG00000004312	NCL	67	77.169	Oryctolagus_cuniculus
ENSJJAG00000016165	Ncl	88	63.192	ENSOARG00000004072	-	61	68.280	Ovis_aries
ENSJJAG00000016165	Ncl	91	73.272	ENSOARG00000020709	-	56	81.414	Ovis_aries
ENSJJAG00000016165	Ncl	61	78.851	ENSOARG00000013710	-	64	79.947	Ovis_aries
ENSJJAG00000016165	Ncl	93	79.421	ENSPPAG00000011619	NCL	95	82.888	Pan_paniscus
ENSJJAG00000016165	Ncl	93	78.215	ENSPPRG00000012603	NCL	55	82.097	Panthera_pardus
ENSJJAG00000016165	Ncl	93	78.064	ENSPTIG00000010393	NCL	55	82.097	Panthera_tigris_altaica
ENSJJAG00000016165	Ncl	91	79.416	ENSPTRG00000013025	NCL	100	82.353	Pan_troglodytes
ENSJJAG00000016165	Ncl	93	78.995	ENSPANG00000010292	NCL	55	82.609	Papio_anubis
ENSJJAG00000016165	Ncl	93	73.835	ENSPPYG00000013265	NCL	55	73.869	Pongo_abelii
ENSJJAG00000016165	Ncl	91	79.109	ENSPCOG00000003051	-	53	81.794	Propithecus_coquereli
ENSJJAG00000016165	Ncl	91	74.684	ENSPCOG00000004160	-	85	75.926	Propithecus_coquereli
ENSJJAG00000016165	Ncl	93	78.571	ENSPVAG00000000297	NCL	55	82.864	Pteropus_vampyrus
ENSJJAG00000016165	Ncl	91	79.475	ENSRNOG00000018273	Ncl	53	85.979	Rattus_norvegicus
ENSJJAG00000016165	Ncl	93	76.227	ENSRBIG00000037525	-	56	80.818	Rhinopithecus_bieti
ENSJJAG00000016165	Ncl	67	82.392	ENSRBIG00000035396	-	82	80.968	Rhinopithecus_bieti
ENSJJAG00000016165	Ncl	93	78.811	ENSRROG00000028756	-	69	78.676	Rhinopithecus_roxellana
ENSJJAG00000016165	Ncl	99	75.044	ENSRROG00000036103	-	73	88.028	Rhinopithecus_roxellana
ENSJJAG00000016165	Ncl	83	74.074	ENSSBOG00000023094	-	74	73.822	Saimiri_boliviensis_boliviensis
ENSJJAG00000016165	Ncl	93	72.419	ENSSBOG00000027549	-	91	82.667	Saimiri_boliviensis_boliviensis
ENSJJAG00000016165	Ncl	93	79.514	ENSSBOG00000029193	-	55	82.609	Saimiri_boliviensis_boliviensis
ENSJJAG00000016165	Ncl	93	77.280	ENSSSCG00000016275	NCL	54	82.097	Sus_scrofa
ENSJJAG00000016165	Ncl	53	69.657	ENSTBEG00000001546	-	53	69.657	Tupaia_belangeri
ENSJJAG00000016165	Ncl	66	71.429	ENSTBEG00000002469	-	66	67.714	Tupaia_belangeri
ENSJJAG00000016165	Ncl	91	76.744	ENSTTRG00000009094	NCL	53	80.688	Tursiops_truncatus
ENSJJAG00000016165	Ncl	87	81.888	ENSUAMG00000005639	NCL	87	78.815	Ursus_americanus
ENSJJAG00000016165	Ncl	55	82.097	ENSUMAG00000015789	NCL	55	82.097	Ursus_maritimus
ENSJJAG00000016165	Ncl	69	86.029	ENSVPAG00000001796	NCL	69	86.620	Vicugna_pacos
ENSJJAG00000016165	Ncl	93	76.183	ENSVVUG00000025564	NCL	64	79.043	Vulpes_vulpes