EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSJJAG00000017198 (Gene tree)
Gene ID: 101611849
Gene Symbol: Hfm1
Alias: A330009G12Rik|LOC381663|Mer3|Sec63d1
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Jaculus_jaculus
Status: putative
Strand: Minus strand
Length: 90629 bases
Position: chrJH725448.1:38646871-38737499
Accession: 101611849
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSJJAP00000014842	ResIII	PF04851.15	2.9e-11	1	1
ENSJJAP00000014842	DEAD	PF00270.29	3.7e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSJJAT00000021345	-	4215	XM_004653769	ENSJJAP00000014842	1397 (aa)	XP_004653826	UPI0003331D0B

Gene Model

Click here to download ENSJJAG00000017198's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSJJAG00000017198's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSJJAG00000017198	Hfm1	52	36.377	ENSJJAG00000022570	Ascc3	61	36.377
ENSJJAG00000017198	Hfm1	59	32.060	ENSJJAG00000023659	Snrnp200	71	32.060

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSJJAG00000017198	Hfm1	100	78.219	ENSG00000162669	HFM1	100	78.219	Homo_sapiens
ENSJJAG00000017198	Hfm1	61	63.562	ENSAPOG00000005304	hfm1	96	63.562	Acanthochromis_polyacanthus
ENSJJAG00000017198	Hfm1	100	77.623	ENSAMEG00000000432	HFM1	100	77.623	Ailuropoda_melanoleuca
ENSJJAG00000017198	Hfm1	69	60.372	ENSACIG00000021553	hfm1	86	60.372	Amphilophus_citrinellus
ENSJJAG00000017198	Hfm1	61	64.177	ENSAOCG00000022839	hfm1	96	67.465	Amphiprion_ocellaris
ENSJJAG00000017198	Hfm1	61	63.827	ENSAPEG00000014316	hfm1	96	67.509	Amphiprion_percula
ENSJJAG00000017198	Hfm1	68	62.500	ENSATEG00000019181	hfm1	80	61.530	Anabas_testudineus
ENSJJAG00000017198	Hfm1	100	58.666	ENSAPLG00000013639	HFM1	100	58.666	Anas_platyrhynchos
ENSJJAG00000017198	Hfm1	100	75.678	ENSANAG00000029513	HFM1	100	75.678	Aotus_nancymaae
ENSJJAG00000017198	Hfm1	66	61.910	ENSACLG00000009033	hfm1	97	63.647	Astatotilapia_calliptera
ENSJJAG00000017198	Hfm1	70	63.536	ENSAMXG00000006108	hfm1	69	63.536	Astyanax_mexicanus
ENSJJAG00000017198	Hfm1	100	76.250	ENSBTAG00000020856	HFM1	100	76.250	Bos_taurus
ENSJJAG00000017198	Hfm1	100	77.244	ENSCJAG00000001843	HFM1	100	77.244	Callithrix_jacchus
ENSJJAG00000017198	Hfm1	99	80.236	ENSCAFG00000020187	HFM1	100	76.597	Canis_familiaris
ENSJJAG00000017198	Hfm1	100	77.014	ENSTSYG00000014250	HFM1	100	77.014	Carlito_syrichta
ENSJJAG00000017198	Hfm1	99	76.059	ENSCPOG00000007421	HFM1	99	76.059	Cavia_porcellus
ENSJJAG00000017198	Hfm1	100	77.175	ENSCCAG00000033206	HFM1	100	77.175	Cebus_capucinus
ENSJJAG00000017198	Hfm1	100	77.801	ENSCATG00000030987	HFM1	100	77.801	Cercocebus_atys
ENSJJAG00000017198	Hfm1	100	81.531	ENSCLAG00000005173	HFM1	97	81.531	Chinchilla_lanigera
ENSJJAG00000017198	Hfm1	65	88.158	ENSCHOG00000011824	-	71	88.158	Choloepus_hoffmanni
ENSJJAG00000017198	Hfm1	50	53.482	ENSCSAVG00000005094	-	100	53.482	Ciona_savignyi
ENSJJAG00000017198	Hfm1	100	72.373	ENSCGRG00001016995	Hfm1	100	72.373	Cricetulus_griseus_chok1gshd
ENSJJAG00000017198	Hfm1	100	75.905	ENSCGRG00000017181	Hfm1	100	75.905	Cricetulus_griseus_crigri
ENSJJAG00000017198	Hfm1	67	61.960	ENSCSEG00000017659	hfm1	87	61.765	Cynoglossus_semilaevis
ENSJJAG00000017198	Hfm1	51	67.321	ENSCVAG00000005075	hfm1	86	67.321	Cyprinodon_variegatus
ENSJJAG00000017198	Hfm1	63	63.063	ENSDARG00000104288	hfm1	80	63.063	Danio_rerio
ENSJJAG00000017198	Hfm1	100	77.193	ENSDNOG00000004776	HFM1	99	77.193	Dasypus_novemcinctus
ENSJJAG00000017198	Hfm1	100	74.209	ENSDORG00000014661	Hfm1	100	74.209	Dipodomys_ordii
ENSJJAG00000017198	Hfm1	68	84.916	ENSEASG00005015424	HFM1	91	84.916	Equus_asinus_asinus
ENSJJAG00000017198	Hfm1	100	80.183	ENSECAG00000024039	HFM1	98	80.183	Equus_caballus
ENSJJAG00000017198	Hfm1	64	66.374	ENSELUG00000018944	hfm1	97	66.374	Esox_lucius
ENSJJAG00000017198	Hfm1	100	77.569	ENSFCAG00000029116	HFM1	100	77.569	Felis_catus
ENSJJAG00000017198	Hfm1	100	57.240	ENSFALG00000001781	HFM1	100	57.779	Ficedula_albicollis
ENSJJAG00000017198	Hfm1	100	80.754	ENSFDAG00000020816	HFM1	95	80.754	Fukomys_damarensis
ENSJJAG00000017198	Hfm1	68	58.921	ENSGMOG00000017436	hfm1	100	58.921	Gadus_morhua
ENSJJAG00000017198	Hfm1	67	63.636	ENSGAFG00000018093	hfm1	96	63.967	Gambusia_affinis
ENSJJAG00000017198	Hfm1	68	60.290	ENSGACG00000015686	hfm1	100	60.290	Gasterosteus_aculeatus
ENSJJAG00000017198	Hfm1	100	78.149	ENSGGOG00000038524	HFM1	100	78.149	Gorilla_gorilla
ENSJJAG00000017198	Hfm1	66	62.808	ENSHBUG00000007309	hfm1	86	62.808	Haplochromis_burtoni
ENSJJAG00000017198	Hfm1	58	63.113	ENSHCOG00000019632	hfm1	97	63.113	Hippocampus_comes
ENSJJAG00000017198	Hfm1	67	63.957	ENSIPUG00000017020	hfm1	92	64.875	Ictalurus_punctatus
ENSJJAG00000017198	Hfm1	64	61.154	ENSKMAG00000002282	hfm1	90	61.154	Kryptolebias_marmoratus
ENSJJAG00000017198	Hfm1	68	60.208	ENSLBEG00000006759	hfm1	96	63.441	Labrus_bergylta
ENSJJAG00000017198	Hfm1	68	69.286	ENSLACG00000010698	HFM1	91	69.390	Latimeria_chalumnae
ENSJJAG00000017198	Hfm1	71	64.314	ENSLOCG00000004931	hfm1	92	64.414	Lepisosteus_oculatus
ENSJJAG00000017198	Hfm1	53	85.599	ENSLAFG00000015903	-	99	85.599	Loxodonta_africana
ENSJJAG00000017198	Hfm1	100	75.312	ENSMFAG00000003649	HFM1	100	75.312	Macaca_fascicularis
ENSJJAG00000017198	Hfm1	100	77.662	ENSMMUG00000006819	HFM1	100	77.662	Macaca_mulatta
ENSJJAG00000017198	Hfm1	56	68.421	ENSMAMG00000004623	hfm1	97	64.976	Mastacembelus_armatus
ENSJJAG00000017198	Hfm1	66	61.910	ENSMZEG00005004679	hfm1	97	63.647	Maylandia_zebra
ENSJJAG00000017198	Hfm1	56	76.148	ENSMGAG00000008437	HFM1	98	76.148	Meleagris_gallopavo
ENSJJAG00000017198	Hfm1	100	75.522	ENSMAUG00000018858	Hfm1	100	75.522	Mesocricetus_auratus
ENSJJAG00000017198	Hfm1	100	77.554	ENSMICG00000037935	HFM1	100	77.554	Microcebus_murinus
ENSJJAG00000017198	Hfm1	100	74.304	ENSMOCG00000014812	Hfm1	100	74.304	Microtus_ochrogaster
ENSJJAG00000017198	Hfm1	64	62.332	ENSMMOG00000006148	hfm1	96	63.384	Mola_mola
ENSJJAG00000017198	Hfm1	66	61.727	ENSMALG00000002401	hfm1	96	63.636	Monopterus_albus
ENSJJAG00000017198	Hfm1	97	77.014	MGP_CAROLIEiJ_G0027496	Hfm1	94	77.014	Mus_caroli
ENSJJAG00000017198	Hfm1	100	75.070	ENSMUSG00000043410	Hfm1	100	75.070	Mus_musculus
ENSJJAG00000017198	Hfm1	100	77.998	MGP_PahariEiJ_G0017268	Hfm1	100	74.373	Mus_pahari
ENSJJAG00000017198	Hfm1	100	77.045	MGP_SPRETEiJ_G0028495	Hfm1	100	75.070	Mus_spretus
ENSJJAG00000017198	Hfm1	100	80.394	ENSMPUG00000004594	HFM1	95	80.394	Mustela_putorius_furo
ENSJJAG00000017198	Hfm1	100	76.197	ENSMLUG00000010200	HFM1	100	76.197	Myotis_lucifugus
ENSJJAG00000017198	Hfm1	72	56.107	ENSNBRG00000002910	hfm1	97	64.121	Neolamprologus_brichardi
ENSJJAG00000017198	Hfm1	100	74.896	ENSNLEG00000010285	HFM1	100	74.896	Nomascus_leucogenys
ENSJJAG00000017198	Hfm1	84	65.823	ENSMEUG00000015788	HFM1	82	65.823	Notamacropus_eugenii
ENSJJAG00000017198	Hfm1	84	74.638	ENSOPRG00000013916	HFM1	84	74.638	Ochotona_princeps
ENSJJAG00000017198	Hfm1	71	61.416	ENSONIG00000010590	hfm1	95	61.416	Oreochromis_niloticus
ENSJJAG00000017198	Hfm1	58	64.084	ENSORLG00000026844	hfm1	99	64.084	Oryzias_latipes
ENSJJAG00000017198	Hfm1	67	63.485	ENSORLG00020002951	hfm1	78	63.485	Oryzias_latipes_hni
ENSJJAG00000017198	Hfm1	70	60.548	ENSOMEG00000016474	hfm1	81	53.200	Oryzias_melastigma
ENSJJAG00000017198	Hfm1	88	81.937	ENSOGAG00000032369	HFM1	100	81.937	Otolemur_garnettii
ENSJJAG00000017198	Hfm1	100	76.544	ENSOARG00000015812	HFM1	100	76.544	Ovis_aries
ENSJJAG00000017198	Hfm1	92	79.713	ENSPPAG00000024582	HFM1	100	79.713	Pan_paniscus
ENSJJAG00000017198	Hfm1	100	77.639	ENSPPRG00000003270	HFM1	100	77.639	Panthera_pardus
ENSJJAG00000017198	Hfm1	100	77.500	ENSPTIG00000018881	HFM1	100	77.500	Panthera_tigris_altaica
ENSJJAG00000017198	Hfm1	100	78.288	ENSPTRG00000000948	HFM1	100	78.288	Pan_troglodytes
ENSJJAG00000017198	Hfm1	100	77.731	ENSPANG00000009838	HFM1	100	77.731	Papio_anubis
ENSJJAG00000017198	Hfm1	64	65.695	ENSPKIG00000003810	hfm1	95	66.184	Paramormyrops_kingsleyae
ENSJJAG00000017198	Hfm1	59	64.329	ENSPMGG00000011059	hfm1	100	64.329	Periophthalmus_magnuspinnatus
ENSJJAG00000017198	Hfm1	100	77.855	ENSPEMG00000022852	Hfm1	100	77.855	Peromyscus_maniculatus_bairdii
ENSJJAG00000017198	Hfm1	100	62.609	ENSPCIG00000014233	HFM1	100	62.609	Phascolarctos_cinereus
ENSJJAG00000017198	Hfm1	68	63.872	ENSPFOG00000017194	hfm1	92	63.872	Poecilia_formosa
ENSJJAG00000017198	Hfm1	67	64.347	ENSPLAG00000000571	hfm1	85	64.347	Poecilia_latipinna
ENSJJAG00000017198	Hfm1	67	64.530	ENSPMEG00000019475	hfm1	86	64.530	Poecilia_mexicana
ENSJJAG00000017198	Hfm1	66	64.332	ENSPREG00000007803	hfm1	96	63.455	Poecilia_reticulata
ENSJJAG00000017198	Hfm1	100	77.871	ENSPPYG00000001163	HFM1	100	77.871	Pongo_abelii
ENSJJAG00000017198	Hfm1	71	73.543	ENSPCAG00000004289	-	69	73.543	Procavia_capensis
ENSJJAG00000017198	Hfm1	100	72.747	ENSPVAG00000009713	HFM1	100	72.747	Pteropus_vampyrus
ENSJJAG00000017198	Hfm1	66	61.803	ENSPNYG00000001795	hfm1	97	63.647	Pundamilia_nyererei
ENSJJAG00000017198	Hfm1	60	66.548	ENSPNAG00000010865	hfm1	84	66.548	Pygocentrus_nattereri
ENSJJAG00000017198	Hfm1	100	74.443	ENSRNOG00000023299	Hfm1	100	74.443	Rattus_norvegicus
ENSJJAG00000017198	Hfm1	100	77.383	ENSRROG00000045569	HFM1	100	77.383	Rhinopithecus_roxellana
ENSJJAG00000017198	Hfm1	100	78.107	ENSSBOG00000027456	HFM1	100	78.107	Saimiri_boliviensis_boliviensis
ENSJJAG00000017198	Hfm1	61	68.512	ENSSHAG00000014616	-	98	68.512	Sarcophilus_harrisii
ENSJJAG00000017198	Hfm1	88	55.068	ENSSFOG00015020129	hfm1	82	55.068	Scleropages_formosus
ENSJJAG00000017198	Hfm1	64	63.240	ENSSMAG00000006907	hfm1	87	63.240	Scophthalmus_maximus
ENSJJAG00000017198	Hfm1	61	63.244	ENSSDUG00000011424	hfm1	96	63.244	Seriola_dumerili
ENSJJAG00000017198	Hfm1	61	63.647	ENSSLDG00000016386	hfm1	96	63.647	Seriola_lalandi_dorsalis
ENSJJAG00000017198	Hfm1	67	59.009	ENSSPAG00000001023	hfm1	96	63.827	Stegastes_partitus
ENSJJAG00000017198	Hfm1	94	77.515	ENSSSCG00000006912	HFM1	96	77.515	Sus_scrofa
ENSJJAG00000017198	Hfm1	68	73.877	ENSTGUG00000006172	HFM1	100	73.877	Taeniopygia_guttata
ENSJJAG00000017198	Hfm1	100	74.061	ENSTTRG00000013933	HFM1	100	74.061	Tursiops_truncatus
ENSJJAG00000017198	Hfm1	93	76.019	ENSVPAG00000011331	HFM1	93	76.019	Vicugna_pacos
ENSJJAG00000017198	Hfm1	67	83.881	ENSVVUG00000020760	HFM1	91	83.881	Vulpes_vulpes
ENSJJAG00000017198	Hfm1	59	65.296	ENSXMAG00000004178	hfm1	92	65.296	Xiphophorus_maculatus