EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSJJAG00000017420 (Gene tree)
Gene ID: -
Gene Symbol: Lsm4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Jaculus_jaculus
Status: putative
Strand: Plus strand
Length: 29043 bases
Position: chrJH725523.1:4217343-4246385
Accession: 101615090
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSJJAP00000015182	LSM	PF01423.22	7.9e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSJJAT00000021686	-	420	-	ENSJJAP00000015182	139 (aa)	-	-
ENSJJAT00000021690	-	321	-	ENSJJAP00000015186	106 (aa)	-	-
ENSJJAT00000021678	-	813	XM_004665931	ENSJJAP00000015174	104 (aa)	XP_004665988	-

Gene Model

Click here to download ENSJJAG00000017420's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSJJAG00000017420's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSJJAG00000017420	Lsm4	52	34.722	ENSJJAG00000013303	Snrpd3	56	34.722

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSJJAG00000017420	Lsm4	100	97.122	ENSG00000130520	LSM4	100	97.122	Homo_sapiens
ENSJJAG00000017420	Lsm4	71	94.949	ENSAPOG00000005643	lsm4	58	96.591	Acanthochromis_polyacanthus
ENSJJAG00000017420	Lsm4	99	97.101	ENSAMEG00000011162	LSM4	95	97.101	Ailuropoda_melanoleuca
ENSJJAG00000017420	Lsm4	99	76.224	ENSAOCG00000006414	lsm4	59	96.591	Amphiprion_ocellaris
ENSJJAG00000017420	Lsm4	99	73.611	ENSAPEG00000006238	lsm4	59	96.591	Amphiprion_percula
ENSJJAG00000017420	Lsm4	71	94.949	ENSATEG00000016559	lsm4	58	96.591	Anabas_testudineus
ENSJJAG00000017420	Lsm4	100	97.122	ENSANAG00000034659	LSM4	100	97.122	Aotus_nancymaae
ENSJJAG00000017420	Lsm4	79	82.258	ENSACLG00000022738	lsm4	60	96.591	Astatotilapia_calliptera
ENSJJAG00000017420	Lsm4	99	81.884	ENSAMXG00000016932	lsm4	62	95.455	Astyanax_mexicanus
ENSJJAG00000017420	Lsm4	100	97.122	ENSBTAG00000008578	LSM4	100	97.122	Bos_taurus
ENSJJAG00000017420	Lsm4	60	73.494	WBGene00003078	lsm-4	67	74.390	Caenorhabditis_elegans
ENSJJAG00000017420	Lsm4	100	97.122	ENSCJAG00000014171	LSM4	100	97.122	Callithrix_jacchus
ENSJJAG00000017420	Lsm4	99	97.101	ENSCAFG00000014900	LSM4	90	97.101	Canis_familiaris
ENSJJAG00000017420	Lsm4	100	97.122	ENSCAFG00020012137	LSM4	100	97.122	Canis_lupus_dingo
ENSJJAG00000017420	Lsm4	99	97.101	ENSCHIG00000010928	LSM4	91	97.101	Capra_hircus
ENSJJAG00000017420	Lsm4	100	97.842	ENSTSYG00000030906	LSM4	100	97.842	Carlito_syrichta
ENSJJAG00000017420	Lsm4	100	96.403	ENSCAPG00000014140	LSM4	100	96.403	Cavia_aperea
ENSJJAG00000017420	Lsm4	100	96.403	ENSCPOG00000024117	LSM4	100	96.403	Cavia_porcellus
ENSJJAG00000017420	Lsm4	100	97.122	ENSCCAG00000036308	LSM4	100	97.122	Cebus_capucinus
ENSJJAG00000017420	Lsm4	100	97.122	ENSCATG00000029311	LSM4	100	97.122	Cercocebus_atys
ENSJJAG00000017420	Lsm4	100	93.525	ENSCLAG00000010828	LSM4	100	93.525	Chinchilla_lanigera
ENSJJAG00000017420	Lsm4	100	97.122	ENSCSAG00000005370	LSM4	100	97.122	Chlorocebus_sabaeus
ENSJJAG00000017420	Lsm4	100	80.576	ENSCPBG00000012925	LSM4	100	87.770	Chrysemys_picta_bellii
ENSJJAG00000017420	Lsm4	62	90.698	ENSCING00000007519	-	69	90.909	Ciona_intestinalis
ENSJJAG00000017420	Lsm4	62	91.860	ENSCSAVG00000008596	-	70	92.045	Ciona_savignyi
ENSJJAG00000017420	Lsm4	100	97.122	ENSCANG00000043686	LSM4	100	97.122	Colobus_angolensis_palliatus
ENSJJAG00000017420	Lsm4	100	97.122	ENSCGRG00001014436	Lsm4	100	97.122	Cricetulus_griseus_chok1gshd
ENSJJAG00000017420	Lsm4	100	96.403	ENSCGRG00000009398	Lsm4	100	97.101	Cricetulus_griseus_crigri
ENSJJAG00000017420	Lsm4	70	93.814	ENSCSEG00000016127	lsm4	62	95.455	Cynoglossus_semilaevis
ENSJJAG00000017420	Lsm4	99	76.087	ENSCVAG00000010601	lsm4	62	95.455	Cyprinodon_variegatus
ENSJJAG00000017420	Lsm4	88	73.171	ENSCVAG00000021828	lsm4	56	94.521	Cyprinodon_variegatus
ENSJJAG00000017420	Lsm4	97	77.305	ENSDARG00000023852	lsm4	62	96.591	Danio_rerio
ENSJJAG00000017420	Lsm4	100	94.964	ENSDORG00000024225	Lsm4	100	94.964	Dipodomys_ordii
ENSJJAG00000017420	Lsm4	65	87.778	FBgn0032240	CG17768	57	88.636	Drosophila_melanogaster
ENSJJAG00000017420	Lsm4	89	95.161	ENSETEG00000007762	-	100	95.161	Echinops_telfairi
ENSJJAG00000017420	Lsm4	54	93.333	ENSEBUG00000003639	-	50	93.333	Eptatretus_burgeri
ENSJJAG00000017420	Lsm4	100	97.122	ENSECAG00000010141	LSM4	57	97.122	Equus_caballus
ENSJJAG00000017420	Lsm4	95	82.090	ENSELUG00000012821	lsm4	66	96.552	Esox_lucius
ENSJJAG00000017420	Lsm4	100	97.122	ENSFCAG00000040580	LSM4	100	97.122	Felis_catus
ENSJJAG00000017420	Lsm4	99	79.710	ENSFALG00000009478	LSM4	99	87.681	Ficedula_albicollis
ENSJJAG00000017420	Lsm4	99	94.928	ENSFDAG00000010124	LSM4	100	94.928	Fukomys_damarensis
ENSJJAG00000017420	Lsm4	69	94.792	ENSGMOG00000007729	lsm4	59	96.552	Gadus_morhua
ENSJJAG00000017420	Lsm4	100	79.856	ENSGALG00000003385	LSM4	100	87.770	Gallus_gallus
ENSJJAG00000017420	Lsm4	79	81.452	ENSGAFG00000004903	lsm4	55	91.781	Gambusia_affinis
ENSJJAG00000017420	Lsm4	68	96.842	ENSGACG00000008140	lsm4	59	96.591	Gasterosteus_aculeatus
ENSJJAG00000017420	Lsm4	100	80.576	ENSGAGG00000017812	LSM4	100	87.770	Gopherus_agassizii
ENSJJAG00000017420	Lsm4	100	97.122	ENSGGOG00000012914	-	100	97.122	Gorilla_gorilla
ENSJJAG00000017420	Lsm4	100	94.245	ENSHGLG00000006568	LSM4	100	94.245	Heterocephalus_glaber_female
ENSJJAG00000017420	Lsm4	66	97.826	ENSHGLG00100007894	LSM4	99	97.826	Heterocephalus_glaber_male
ENSJJAG00000017420	Lsm4	99	75.912	ENSHCOG00000008819	lsm4	62	96.591	Hippocampus_comes
ENSJJAG00000017420	Lsm4	99	81.884	ENSIPUG00000005368	Lsm4	62	96.591	Ictalurus_punctatus
ENSJJAG00000017420	Lsm4	100	97.122	ENSSTOG00000016494	LSM4	100	97.122	Ictidomys_tridecemlineatus
ENSJJAG00000017420	Lsm4	62	95.349	ENSKMAG00000005073	lsm4	61	95.455	Kryptolebias_marmoratus
ENSJJAG00000017420	Lsm4	71	94.949	ENSLBEG00000027930	lsm4	59	96.591	Labrus_bergylta
ENSJJAG00000017420	Lsm4	99	81.752	ENSLACG00000015861	LSM4	98	81.752	Latimeria_chalumnae
ENSJJAG00000017420	Lsm4	93	82.171	ENSLOCG00000002025	lsm4	62	95.455	Lepisosteus_oculatus
ENSJJAG00000017420	Lsm4	99	95.652	ENSLAFG00000017459	LSM4	99	95.652	Loxodonta_africana
ENSJJAG00000017420	Lsm4	100	97.122	ENSMFAG00000031194	LSM4	100	97.122	Macaca_fascicularis
ENSJJAG00000017420	Lsm4	100	97.122	ENSMMUG00000004405	LSM4	100	97.122	Macaca_mulatta
ENSJJAG00000017420	Lsm4	100	97.122	ENSMNEG00000042899	LSM4	100	97.122	Macaca_nemestrina
ENSJJAG00000017420	Lsm4	100	97.122	ENSMLEG00000027948	LSM4	100	97.122	Mandrillus_leucophaeus
ENSJJAG00000017420	Lsm4	99	78.261	ENSMAMG00000006190	lsm4	62	96.591	Mastacembelus_armatus
ENSJJAG00000017420	Lsm4	79	82.258	ENSMZEG00005016420	lsm4	60	96.591	Maylandia_zebra
ENSJJAG00000017420	Lsm4	99	81.295	ENSMGAG00000004976	LSM4	99	87.681	Meleagris_gallopavo
ENSJJAG00000017420	Lsm4	100	96.403	ENSMICG00000000222	LSM4	100	96.403	Microcebus_murinus
ENSJJAG00000017420	Lsm4	100	97.842	ENSMOCG00000020861	Lsm4	100	97.842	Microtus_ochrogaster
ENSJJAG00000017420	Lsm4	89	93.548	ENSMODG00000015044	-	100	93.548	Monodelphis_domestica
ENSJJAG00000017420	Lsm4	99	75.714	ENSMALG00000018159	lsm4	62	95.455	Monopterus_albus
ENSJJAG00000017420	Lsm4	100	97.842	MGP_CAROLIEiJ_G0031158	Lsm4	100	97.842	Mus_caroli
ENSJJAG00000017420	Lsm4	100	97.842	ENSMUSG00000031848	Lsm4	100	97.842	Mus_musculus
ENSJJAG00000017420	Lsm4	100	97.842	MGP_PahariEiJ_G0021623	Lsm4	100	97.842	Mus_pahari
ENSJJAG00000017420	Lsm4	100	97.842	MGP_SPRETEiJ_G0032276	Lsm4	100	97.842	Mus_spretus
ENSJJAG00000017420	Lsm4	100	97.122	ENSMPUG00000015589	LSM4	100	97.122	Mustela_putorius_furo
ENSJJAG00000017420	Lsm4	99	97.101	ENSMLUG00000004010	LSM4	99	97.101	Myotis_lucifugus
ENSJJAG00000017420	Lsm4	100	97.842	ENSNGAG00000008644	Lsm4	100	97.842	Nannospalax_galili
ENSJJAG00000017420	Lsm4	71	94.898	ENSNBRG00000022150	lsm4	54	96.552	Neolamprologus_brichardi
ENSJJAG00000017420	Lsm4	89	89.516	ENSMEUG00000013229	LSM4	100	89.516	Notamacropus_eugenii
ENSJJAG00000017420	Lsm4	89	91.129	ENSOPRG00000005575	LSM4	100	81.452	Ochotona_princeps
ENSJJAG00000017420	Lsm4	100	94.245	ENSODEG00000020549	-	100	94.245	Octodon_degus
ENSJJAG00000017420	Lsm4	100	71.223	ENSODEG00000011712	-	100	71.223	Octodon_degus
ENSJJAG00000017420	Lsm4	100	85.612	ENSODEG00000004519	-	100	74.101	Octodon_degus
ENSJJAG00000017420	Lsm4	79	82.258	ENSONIG00000012724	lsm4	60	96.591	Oreochromis_niloticus
ENSJJAG00000017420	Lsm4	63	91.209	ENSOANG00000007434	LSM4	78	91.209	Ornithorhynchus_anatinus
ENSJJAG00000017420	Lsm4	99	82.979	ENSORLG00000008391	lsm4	61	95.455	Oryzias_latipes
ENSJJAG00000017420	Lsm4	99	71.523	ENSORLG00020014829	lsm4	61	95.455	Oryzias_latipes_hni
ENSJJAG00000017420	Lsm4	99	82.979	ENSORLG00015010205	lsm4	61	95.455	Oryzias_latipes_hsok
ENSJJAG00000017420	Lsm4	100	82.014	ENSOMEG00000003606	lsm4	61	95.455	Oryzias_melastigma
ENSJJAG00000017420	Lsm4	71	95.960	ENSOGAG00000027992	LSM4	60	97.701	Otolemur_garnettii
ENSJJAG00000017420	Lsm4	86	96.639	ENSOARG00000012553	LSM4	94	96.639	Ovis_aries
ENSJJAG00000017420	Lsm4	100	97.122	ENSPPAG00000044045	-	100	97.122	Pan_paniscus
ENSJJAG00000017420	Lsm4	100	97.122	ENSPPRG00000018264	LSM4	100	97.122	Panthera_pardus
ENSJJAG00000017420	Lsm4	99	97.101	ENSPTIG00000006306	LSM4	100	97.101	Panthera_tigris_altaica
ENSJJAG00000017420	Lsm4	100	97.122	ENSPTRG00000031470	LSM4	100	97.122	Pan_troglodytes
ENSJJAG00000017420	Lsm4	100	97.122	ENSPANG00000014399	LSM4	100	97.122	Papio_anubis
ENSJJAG00000017420	Lsm4	99	80.292	ENSPKIG00000006154	lsm4	62	96.591	Paramormyrops_kingsleyae
ENSJJAG00000017420	Lsm4	99	79.710	ENSPSIG00000012358	LSM4	100	87.681	Pelodiscus_sinensis
ENSJJAG00000017420	Lsm4	100	97.842	ENSPEMG00000001358	Lsm4	100	97.842	Peromyscus_maniculatus_bairdii
ENSJJAG00000017420	Lsm4	99	75.000	ENSPLAG00000016267	lsm4	62	96.591	Poecilia_latipinna
ENSJJAG00000017420	Lsm4	98	76.978	ENSPMEG00000016378	lsm4	63	96.552	Poecilia_mexicana
ENSJJAG00000017420	Lsm4	100	97.122	ENSPPYG00000009736	LSM4	100	97.122	Pongo_abelii
ENSJJAG00000017420	Lsm4	89	95.161	ENSPCAG00000008513	LSM4	100	95.161	Procavia_capensis
ENSJJAG00000017420	Lsm4	100	96.403	ENSPCOG00000019837	LSM4	100	96.403	Propithecus_coquereli
ENSJJAG00000017420	Lsm4	100	97.122	ENSPVAG00000015383	LSM4	100	97.122	Pteropus_vampyrus
ENSJJAG00000017420	Lsm4	79	82.258	ENSPNYG00000016794	lsm4	60	96.591	Pundamilia_nyererei
ENSJJAG00000017420	Lsm4	96	82.090	ENSPNAG00000016598	lsm4	65	96.552	Pygocentrus_nattereri
ENSJJAG00000017420	Lsm4	100	97.842	ENSRNOG00000019572	Lsm4	100	97.842	Rattus_norvegicus
ENSJJAG00000017420	Lsm4	100	97.122	ENSRBIG00000024717	LSM4	100	97.122	Rhinopithecus_bieti
ENSJJAG00000017420	Lsm4	100	97.122	ENSRROG00000045706	LSM4	100	97.122	Rhinopithecus_roxellana
ENSJJAG00000017420	Lsm4	90	96.800	ENSSBOG00000022455	LSM4	100	96.800	Saimiri_boliviensis_boliviensis
ENSJJAG00000017420	Lsm4	100	94.245	ENSSHAG00000011559	LSM4	100	94.245	Sarcophilus_harrisii
ENSJJAG00000017420	Lsm4	99	78.832	ENSSFOG00015021067	lsm4	62	96.591	Scleropages_formosus
ENSJJAG00000017420	Lsm4	99	70.423	ENSSMAG00000021020	lsm4	95	70.423	Scophthalmus_maximus
ENSJJAG00000017420	Lsm4	71	94.949	ENSSDUG00000009588	lsm4	53	96.591	Seriola_dumerili
ENSJJAG00000017420	Lsm4	71	94.949	ENSSLDG00000006827	lsm4	52	96.591	Seriola_lalandi_dorsalis
ENSJJAG00000017420	Lsm4	63	96.552	ENSSPUG00000010166	LSM4	56	96.552	Sphenodon_punctatus
ENSJJAG00000017420	Lsm4	71	94.949	ENSSPAG00000011615	lsm4	58	96.591	Stegastes_partitus
ENSJJAG00000017420	Lsm4	100	97.122	ENSSSCG00000034314	LSM4	100	97.122	Sus_scrofa
ENSJJAG00000017420	Lsm4	79	79.839	ENSTRUG00000021737	lsm4	62	94.318	Takifugu_rubripes
ENSJJAG00000017420	Lsm4	99	79.286	ENSTNIG00000010191	lsm4	61	95.455	Tetraodon_nigroviridis
ENSJJAG00000017420	Lsm4	99	97.101	ENSUAMG00000000665	LSM4	99	97.101	Ursus_americanus
ENSJJAG00000017420	Lsm4	100	97.122	ENSUMAG00000009013	LSM4	100	97.122	Ursus_maritimus
ENSJJAG00000017420	Lsm4	99	97.101	ENSVVUG00000008136	LSM4	71	97.101	Vulpes_vulpes
ENSJJAG00000017420	Lsm4	100	89.928	ENSXETG00000024933	lsm4	100	87.050	Xenopus_tropicalis