EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSJJAG00000018334 (Gene tree)
Gene ID: 101599100
Gene Symbol: Pspc1
Alias: 5730470C09Rik|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Jaculus_jaculus
Status: putative
Strand: Minus strand
Length: 79970 bases
Position: chrJH725522.1:9254381-9334350
Accession: 101599100
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSJJAP00000016501	RRM_1	PF00076.22	2.4e-32	1	2
ENSJJAP00000016501	RRM_1	PF00076.22	2.4e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSJJAT00000023013	-	2465	XM_004665889	ENSJJAP00000016501	522 (aa)	XP_004665946	UPI0003332E05

Gene Model

Click here to download ENSJJAG00000018334's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSJJAG00000018334's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSJJAG00000018334	Pspc1	89	58.723	ENSJJAG00000015633	Sfpq	51	68.579
ENSJJAG00000018334	Pspc1	89	49.567	ENSJJAG00000001971	-	74	50.829
ENSJJAG00000018334	Pspc1	91	59.072	ENSJJAG00000017151	-	79	67.024

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSJJAG00000018334	Pspc1	100	97.514	ENSG00000121390	PSPC1	100	97.514	Homo_sapiens
ENSJJAG00000018334	Pspc1	88	70.021	ENSAPOG00000015946	pspc1	76	75.426	Acanthochromis_polyacanthus
ENSJJAG00000018334	Pspc1	100	97.132	ENSAMEG00000017420	PSPC1	100	97.132	Ailuropoda_melanoleuca
ENSJJAG00000018334	Pspc1	88	61.996	ENSACIG00000018695	pspc1	87	59.448	Amphilophus_citrinellus
ENSJJAG00000018334	Pspc1	88	69.520	ENSAOCG00000005279	pspc1	76	74.939	Amphiprion_ocellaris
ENSJJAG00000018334	Pspc1	88	70.638	ENSAPEG00000015927	pspc1	76	74.939	Amphiprion_percula
ENSJJAG00000018334	Pspc1	88	58.174	ENSATEG00000004878	pspc1	76	62.169	Anabas_testudineus
ENSJJAG00000018334	Pspc1	77	93.069	ENSAPLG00000006246	PSPC1	100	93.069	Anas_platyrhynchos
ENSJJAG00000018334	Pspc1	89	60.730	ENSAPLG00000003643	SFPQ	69	68.852	Anas_platyrhynchos
ENSJJAG00000018334	Pspc1	99	84.571	ENSACAG00000002093	PSPC1	88	91.631	Anolis_carolinensis
ENSJJAG00000018334	Pspc1	90	52.292	ENSACAG00000013307	-	57	63.612	Anolis_carolinensis
ENSJJAG00000018334	Pspc1	100	97.323	ENSANAG00000000059	PSPC1	100	97.323	Aotus_nancymaae
ENSJJAG00000018334	Pspc1	99	56.881	ENSACLG00000027220	pspc1	87	59.101	Astatotilapia_calliptera
ENSJJAG00000018334	Pspc1	99	63.187	ENSAMXG00000036881	pspc1	80	72.874	Astyanax_mexicanus
ENSJJAG00000018334	Pspc1	100	95.220	ENSBTAG00000003934	PSPC1	100	94.264	Bos_taurus
ENSJJAG00000018334	Pspc1	100	97.323	ENSCJAG00000004554	PSPC1	100	97.323	Callithrix_jacchus
ENSJJAG00000018334	Pspc1	100	97.323	ENSCAFG00020002009	PSPC1	100	97.323	Canis_lupus_dingo
ENSJJAG00000018334	Pspc1	100	95.220	ENSCHIG00000016708	PSPC1	100	94.264	Capra_hircus
ENSJJAG00000018334	Pspc1	80	87.678	ENSTSYG00000032882	PSPC1	93	85.036	Carlito_syrichta
ENSJJAG00000018334	Pspc1	100	96.176	ENSCPOG00000000395	PSPC1	100	96.176	Cavia_porcellus
ENSJJAG00000018334	Pspc1	100	97.323	ENSCCAG00000033498	PSPC1	100	97.323	Cebus_capucinus
ENSJJAG00000018334	Pspc1	100	97.132	ENSCATG00000036434	PSPC1	100	97.132	Cercocebus_atys
ENSJJAG00000018334	Pspc1	88	87.473	ENSCLAG00000005241	PSPC1	99	87.473	Chinchilla_lanigera
ENSJJAG00000018334	Pspc1	100	91.396	ENSCHOG00000008913	PSPC1	100	91.013	Choloepus_hoffmanni
ENSJJAG00000018334	Pspc1	99	86.364	ENSCPBG00000020859	PSPC1	99	86.364	Chrysemys_picta_bellii
ENSJJAG00000018334	Pspc1	55	60.417	ENSCSAVG00000003533	-	53	61.786	Ciona_savignyi
ENSJJAG00000018334	Pspc1	78	85.185	ENSCANG00000018948	PSPC1	87	99.618	Colobus_angolensis_palliatus
ENSJJAG00000018334	Pspc1	100	97.126	ENSCGRG00001018368	Pspc1	100	97.126	Cricetulus_griseus_chok1gshd
ENSJJAG00000018334	Pspc1	100	97.126	ENSCGRG00000011724	Pspc1	100	97.126	Cricetulus_griseus_crigri
ENSJJAG00000018334	Pspc1	87	66.234	ENSCVAG00000007679	-	86	65.152	Cyprinodon_variegatus
ENSJJAG00000018334	Pspc1	99	65.985	ENSDARG00000006621	pspc1	100	67.150	Danio_rerio
ENSJJAG00000018334	Pspc1	100	96.558	ENSDNOG00000011078	PSPC1	100	96.367	Dasypus_novemcinctus
ENSJJAG00000018334	Pspc1	100	94.264	ENSDORG00000016050	Pspc1	100	93.690	Dipodomys_ordii
ENSJJAG00000018334	Pspc1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSJJAG00000018334	Pspc1	88	59.298	ENSEBUG00000003964	-	62	72.254	Eptatretus_burgeri
ENSJJAG00000018334	Pspc1	58	46.037	ENSEBUG00000010133	pspc1	72	51.273	Eptatretus_burgeri
ENSJJAG00000018334	Pspc1	100	97.126	ENSEASG00005000119	PSPC1	100	97.126	Equus_asinus_asinus
ENSJJAG00000018334	Pspc1	100	97.126	ENSECAG00000017286	PSPC1	100	97.126	Equus_caballus
ENSJJAG00000018334	Pspc1	89	93.443	ENSEEUG00000011288	-	100	64.751	Erinaceus_europaeus
ENSJJAG00000018334	Pspc1	99	65.314	ENSELUG00000003746	pspc1	88	72.050	Esox_lucius
ENSJJAG00000018334	Pspc1	100	97.514	ENSFCAG00000027841	PSPC1	100	97.514	Felis_catus
ENSJJAG00000018334	Pspc1	89	94.218	ENSFALG00000008750	PSPC1	99	87.189	Ficedula_albicollis
ENSJJAG00000018334	Pspc1	100	94.444	ENSFDAG00000002617	PSPC1	100	94.444	Fukomys_damarensis
ENSJJAG00000018334	Pspc1	88	66.738	ENSGMOG00000015074	pspc1	86	65.875	Gadus_morhua
ENSJJAG00000018334	Pspc1	99	87.066	ENSGALG00000017142	PSPC1	99	87.283	Gallus_gallus
ENSJJAG00000018334	Pspc1	62	77.846	ENSGAFG00000006327	pspc1	67	77.846	Gambusia_affinis
ENSJJAG00000018334	Pspc1	88	65.517	ENSGACG00000014901	pspc1	92	73.089	Gasterosteus_aculeatus
ENSJJAG00000018334	Pspc1	92	58.848	ENSGAGG00000017325	-	56	68.033	Gopherus_agassizii
ENSJJAG00000018334	Pspc1	99	86.174	ENSGAGG00000019164	PSPC1	99	87.259	Gopherus_agassizii
ENSJJAG00000018334	Pspc1	100	97.323	ENSGGOG00000003414	PSPC1	100	97.323	Gorilla_gorilla
ENSJJAG00000018334	Pspc1	99	63.536	ENSHBUG00000001139	pspc1	87	69.313	Haplochromis_burtoni
ENSJJAG00000018334	Pspc1	100	96.367	ENSHGLG00000018811	PSPC1	100	96.367	Heterocephalus_glaber_female
ENSJJAG00000018334	Pspc1	67	92.837	ENSHGLG00100007962	PSPC1	100	92.837	Heterocephalus_glaber_male
ENSJJAG00000018334	Pspc1	73	70.390	ENSHCOG00000013251	pspc1	83	69.681	Hippocampus_comes
ENSJJAG00000018334	Pspc1	91	72.521	ENSIPUG00000013192	pspc1	80	76.923	Ictalurus_punctatus
ENSJJAG00000018334	Pspc1	100	97.323	ENSSTOG00000026833	PSPC1	100	97.323	Ictidomys_tridecemlineatus
ENSJJAG00000018334	Pspc1	88	55.724	ENSKMAG00000013525	-	84	54.409	Kryptolebias_marmoratus
ENSJJAG00000018334	Pspc1	90	66.395	ENSLBEG00000004474	pspc1	73	74.716	Labrus_bergylta
ENSJJAG00000018334	Pspc1	99	76.067	ENSLACG00000010762	PSPC1	88	84.698	Latimeria_chalumnae
ENSJJAG00000018334	Pspc1	99	77.159	ENSLOCG00000010832	pspc1	91	83.731	Lepisosteus_oculatus
ENSJJAG00000018334	Pspc1	100	96.743	ENSLAFG00000010968	PSPC1	100	96.743	Loxodonta_africana
ENSJJAG00000018334	Pspc1	100	97.323	ENSMFAG00000032728	PSPC1	100	97.323	Macaca_fascicularis
ENSJJAG00000018334	Pspc1	100	97.323	ENSMMUG00000020262	PSPC1	100	97.323	Macaca_mulatta
ENSJJAG00000018334	Pspc1	100	97.323	ENSMNEG00000027401	PSPC1	100	97.323	Macaca_nemestrina
ENSJJAG00000018334	Pspc1	100	98.496	ENSMLEG00000039043	PSPC1	100	100.000	Mandrillus_leucophaeus
ENSJJAG00000018334	Pspc1	88	67.216	ENSMAMG00000004333	pspc1	75	73.236	Mastacembelus_armatus
ENSJJAG00000018334	Pspc1	99	56.881	ENSMZEG00005005726	pspc1	87	59.101	Maylandia_zebra
ENSJJAG00000018334	Pspc1	78	92.857	ENSMGAG00000015134	PSPC1	100	92.857	Meleagris_gallopavo
ENSJJAG00000018334	Pspc1	88	91.757	ENSMAUG00000021067	Pspc1	99	91.757	Mesocricetus_auratus
ENSJJAG00000018334	Pspc1	100	96.935	ENSMICG00000013970	PSPC1	100	96.935	Microcebus_murinus
ENSJJAG00000018334	Pspc1	100	97.510	ENSMOCG00000006060	Pspc1	100	97.510	Microtus_ochrogaster
ENSJJAG00000018334	Pspc1	92	43.050	ENSMMOG00000004352	pspc1	58	52.615	Mola_mola
ENSJJAG00000018334	Pspc1	93	95.670	ENSMODG00000008029	PSPC1	78	95.258	Monodelphis_domestica
ENSJJAG00000018334	Pspc1	88	69.313	ENSMALG00000008914	pspc1	88	67.234	Monopterus_albus
ENSJJAG00000018334	Pspc1	100	97.514	MGP_CAROLIEiJ_G0019341	Pspc1	100	97.514	Mus_caroli
ENSJJAG00000018334	Pspc1	100	97.706	ENSMUSG00000021938	Pspc1	100	97.706	Mus_musculus
ENSJJAG00000018334	Pspc1	100	97.514	MGP_PahariEiJ_G0030359	Pspc1	100	97.514	Mus_pahari
ENSJJAG00000018334	Pspc1	100	97.514	MGP_SPRETEiJ_G0020232	Pspc1	100	97.514	Mus_spretus
ENSJJAG00000018334	Pspc1	100	96.941	ENSMPUG00000013347	PSPC1	100	96.941	Mustela_putorius_furo
ENSJJAG00000018334	Pspc1	100	95.437	ENSMLUG00000017663	PSPC1	100	95.437	Myotis_lucifugus
ENSJJAG00000018334	Pspc1	100	96.935	ENSNGAG00000011271	Pspc1	100	96.935	Nannospalax_galili
ENSJJAG00000018334	Pspc1	74	62.935	ENSNBRG00000014059	pspc1	76	68.902	Neolamprologus_brichardi
ENSJJAG00000018334	Pspc1	100	97.514	ENSNLEG00000001294	PSPC1	100	97.514	Nomascus_leucogenys
ENSJJAG00000018334	Pspc1	100	75.717	ENSMEUG00000000476	PSPC1	100	75.717	Notamacropus_eugenii
ENSJJAG00000018334	Pspc1	100	84.704	ENSODEG00000007817	-	100	80.907	Octodon_degus
ENSJJAG00000018334	Pspc1	100	83.969	ENSODEG00000019012	-	100	84.688	Octodon_degus
ENSJJAG00000018334	Pspc1	99	63.603	ENSONIG00000012010	pspc1	87	68.644	Oreochromis_niloticus
ENSJJAG00000018334	Pspc1	99	66.157	ENSOANG00000011381	-	99	64.054	Ornithorhynchus_anatinus
ENSJJAG00000018334	Pspc1	76	96.992	ENSOANG00000009017	-	100	96.992	Ornithorhynchus_anatinus
ENSJJAG00000018334	Pspc1	100	97.132	ENSOCUG00000006153	PSPC1	100	97.132	Oryctolagus_cuniculus
ENSJJAG00000018334	Pspc1	88	70.000	ENSORLG00000004232	-	87	64.182	Oryzias_latipes
ENSJJAG00000018334	Pspc1	88	69.362	ENSORLG00020000578	PSPC1	87	64.990	Oryzias_latipes_hni
ENSJJAG00000018334	Pspc1	88	70.213	ENSORLG00015017480	pspc1	82	68.421	Oryzias_latipes_hsok
ENSJJAG00000018334	Pspc1	100	97.706	ENSOGAG00000012643	PSPC1	100	97.706	Otolemur_garnettii
ENSJJAG00000018334	Pspc1	100	90.840	ENSOARG00000014163	PSPC1	100	90.840	Ovis_aries
ENSJJAG00000018334	Pspc1	89	91.828	ENSPPAG00000009836	PSPC1	93	99.085	Pan_paniscus
ENSJJAG00000018334	Pspc1	100	97.514	ENSPPRG00000008833	PSPC1	100	97.514	Panthera_pardus
ENSJJAG00000018334	Pspc1	100	82.375	ENSPTIG00000016917	PSPC1	100	82.375	Panthera_tigris_altaica
ENSJJAG00000018334	Pspc1	98	95.914	ENSPTRG00000005677	PSPC1	99	97.531	Pan_troglodytes
ENSJJAG00000018334	Pspc1	100	97.323	ENSPANG00000001992	PSPC1	100	97.323	Papio_anubis
ENSJJAG00000018334	Pspc1	84	76.298	ENSPKIG00000003578	pspc1	81	77.189	Paramormyrops_kingsleyae
ENSJJAG00000018334	Pspc1	99	86.817	ENSPSIG00000005168	PSPC1	99	86.415	Pelodiscus_sinensis
ENSJJAG00000018334	Pspc1	59	69.745	ENSPMGG00000015135	pspc1	80	73.611	Periophthalmus_magnuspinnatus
ENSJJAG00000018334	Pspc1	100	97.701	ENSPEMG00000015214	Pspc1	100	97.701	Peromyscus_maniculatus_bairdii
ENSJJAG00000018334	Pspc1	99	95.977	ENSPCIG00000017680	PSPC1	100	95.977	Phascolarctos_cinereus
ENSJJAG00000018334	Pspc1	92	66.802	ENSPFOG00000003362	pspc1	88	67.865	Poecilia_formosa
ENSJJAG00000018334	Pspc1	92	66.802	ENSPLAG00000011540	pspc1	87	67.865	Poecilia_latipinna
ENSJJAG00000018334	Pspc1	70	64.770	ENSPLAG00000004407	-	53	60.367	Poecilia_latipinna
ENSJJAG00000018334	Pspc1	92	66.397	ENSPMEG00000008322	pspc1	87	67.442	Poecilia_mexicana
ENSJJAG00000018334	Pspc1	68	65.278	ENSPMEG00000001025	-	51	60.647	Poecilia_mexicana
ENSJJAG00000018334	Pspc1	92	66.397	ENSPREG00000007786	pspc1	87	67.442	Poecilia_reticulata
ENSJJAG00000018334	Pspc1	100	97.126	ENSPPYG00000005186	PSPC1	100	97.126	Pongo_abelii
ENSJJAG00000018334	Pspc1	66	99.387	ENSPCAG00000008314	-	66	99.387	Procavia_capensis
ENSJJAG00000018334	Pspc1	100	93.499	ENSPCOG00000014364	PSPC1	100	93.499	Propithecus_coquereli
ENSJJAG00000018334	Pspc1	100	92.912	ENSPVAG00000005036	PSPC1	100	93.295	Pteropus_vampyrus
ENSJJAG00000018334	Pspc1	99	56.881	ENSPNYG00000008893	pspc1	87	59.101	Pundamilia_nyererei
ENSJJAG00000018334	Pspc1	88	72.824	ENSPNAG00000016511	pspc1	85	74.138	Pygocentrus_nattereri
ENSJJAG00000018334	Pspc1	100	97.510	ENSRNOG00000020782	Pspc1	100	97.510	Rattus_norvegicus
ENSJJAG00000018334	Pspc1	93	97.536	ENSRBIG00000036057	PSPC1	100	97.536	Rhinopithecus_bieti
ENSJJAG00000018334	Pspc1	100	97.323	ENSRROG00000036334	PSPC1	100	97.323	Rhinopithecus_roxellana
ENSJJAG00000018334	Pspc1	79	87.893	ENSSBOG00000028172	PSPC1	90	94.928	Saimiri_boliviensis_boliviensis
ENSJJAG00000018334	Pspc1	100	90.667	ENSSHAG00000004696	PSPC1	100	90.286	Sarcophilus_harrisii
ENSJJAG00000018334	Pspc1	81	79.059	ENSSFOG00015001395	pspc1	89	78.271	Scleropages_formosus
ENSJJAG00000018334	Pspc1	88	66.736	ENSSMAG00000001761	pspc1	82	76.667	Scophthalmus_maximus
ENSJJAG00000018334	Pspc1	88	68.763	ENSSDUG00000010651	pspc1	76	73.953	Seriola_dumerili
ENSJJAG00000018334	Pspc1	88	64.286	ENSSLDG00000004284	pspc1	81	61.663	Seriola_lalandi_dorsalis
ENSJJAG00000018334	Pspc1	100	88.506	ENSSARG00000000888	PSPC1	100	88.889	Sorex_araneus
ENSJJAG00000018334	Pspc1	99	74.480	ENSSPUG00000008550	PSPC1	99	75.048	Sphenodon_punctatus
ENSJJAG00000018334	Pspc1	89	53.814	ENSSPUG00000001136	-	53	61.453	Sphenodon_punctatus
ENSJJAG00000018334	Pspc1	88	68.660	ENSSPAG00000001921	pspc1	77	72.558	Stegastes_partitus
ENSJJAG00000018334	Pspc1	100	96.183	ENSSSCG00000009569	PSPC1	100	96.183	Sus_scrofa
ENSJJAG00000018334	Pspc1	89	94.218	ENSTGUG00000011295	PSPC1	100	94.218	Taeniopygia_guttata
ENSJJAG00000018334	Pspc1	89	62.791	ENSTRUG00000011335	pspc1	77	65.617	Takifugu_rubripes
ENSJJAG00000018334	Pspc1	88	64.807	ENSTNIG00000010358	pspc1	85	65.728	Tetraodon_nigroviridis
ENSJJAG00000018334	Pspc1	100	76.437	ENSTBEG00000002361	PSPC1	100	75.479	Tupaia_belangeri
ENSJJAG00000018334	Pspc1	100	95.594	ENSTTRG00000003343	PSPC1	100	95.594	Tursiops_truncatus
ENSJJAG00000018334	Pspc1	67	97.151	ENSUAMG00000012309	PSPC1	100	97.151	Ursus_americanus
ENSJJAG00000018334	Pspc1	93	97.331	ENSUMAG00000013993	PSPC1	100	97.331	Ursus_maritimus
ENSJJAG00000018334	Pspc1	76	98.246	ENSVPAG00000010029	PSPC1	100	98.246	Vicugna_pacos
ENSJJAG00000018334	Pspc1	100	97.323	ENSVVUG00000006414	PSPC1	100	97.409	Vulpes_vulpes
ENSJJAG00000018334	Pspc1	66	73.639	ENSXCOG00000017438	pspc1	77	76.994	Xiphophorus_couchianus
ENSJJAG00000018334	Pspc1	66	73.639	ENSXMAG00000007929	pspc1	77	76.994	Xiphophorus_maculatus