EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSJJAG00000019426 (Gene tree)
Gene ID: 101597097
Gene Symbol: Cpsf4
Alias: 30kDa
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Jaculus_jaculus
Status: putative
Strand: Minus strand
Length: 13498 bases
Position: chrJH725646.1:125826-139323
Accession: 101597097
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSJJAP00000018061	zf-CCCH	PF00642.24	2.9e-20	1	2
ENSJJAP00000018061	zf-CCCH	PF00642.24	2.9e-20	2	2
ENSJJAP00000018054	zf-CCCH	PF00642.24	1.2e-15	1	2
ENSJJAP00000018054	zf-CCCH	PF00642.24	1.2e-15	2	2
ENSJJAP00000018054	zf-CCHC	PF00098.23	2.7e-06	1	1
ENSJJAP00000018061	zf-CCHC	PF00098.23	3.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSJJAT00000024583	-	791	XM_004672702	ENSJJAP00000018054	211 (aa)	XP_004672759	UPI0003331DDE
ENSJJAT00000024590	-	959	XM_004672699	ENSJJAP00000018061	269 (aa)	XP_004672756	UPI0002A89D1D

Gene Model

Click here to download ENSJJAG00000019426's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSJJAG00000019426's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSJJAG00000019426	Cpsf4	100	99.257	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSJJAG00000019426	Cpsf4	67	74.176	ENSAPOG00000004921	cpsf4	100	74.176	Acanthochromis_polyacanthus
ENSJJAG00000019426	Cpsf4	100	99.628	ENSAMEG00000006252	CPSF4	100	99.628	Ailuropoda_melanoleuca
ENSJJAG00000019426	Cpsf4	100	79.554	ENSACIG00000009248	cpsf4	100	77.695	Amphilophus_citrinellus
ENSJJAG00000019426	Cpsf4	100	84.815	ENSAOCG00000019616	cpsf4	100	84.815	Amphiprion_ocellaris
ENSJJAG00000019426	Cpsf4	100	84.815	ENSAPEG00000011679	cpsf4	100	84.815	Amphiprion_percula
ENSJJAG00000019426	Cpsf4	100	84.191	ENSATEG00000007010	cpsf4	100	84.191	Anabas_testudineus
ENSJJAG00000019426	Cpsf4	100	93.309	ENSACAG00000012941	CPSF4	89	93.309	Anolis_carolinensis
ENSJJAG00000019426	Cpsf4	100	99.257	ENSANAG00000021360	CPSF4	100	99.257	Aotus_nancymaae
ENSJJAG00000019426	Cpsf4	100	83.704	ENSACLG00000010374	cpsf4	100	83.704	Astatotilapia_calliptera
ENSJJAG00000019426	Cpsf4	100	85.782	ENSAMXG00000031647	cpsf4	100	86.256	Astyanax_mexicanus
ENSJJAG00000019426	Cpsf4	100	89.219	ENSBTAG00000002090	CPSF4	100	89.219	Bos_taurus
ENSJJAG00000019426	Cpsf4	100	99.257	ENSCJAG00000015826	CPSF4	100	99.257	Callithrix_jacchus
ENSJJAG00000019426	Cpsf4	100	99.257	ENSCAFG00000015036	CPSF4	100	99.257	Canis_familiaris
ENSJJAG00000019426	Cpsf4	100	92.937	ENSCAFG00020014462	CPSF4	100	92.937	Canis_lupus_dingo
ENSJJAG00000019426	Cpsf4	100	98.885	ENSCHIG00000014313	CPSF4	100	98.885	Capra_hircus
ENSJJAG00000019426	Cpsf4	100	98.578	ENSTSYG00000005712	-	100	98.578	Carlito_syrichta
ENSJJAG00000019426	Cpsf4	85	89.503	ENSTSYG00000008195	-	100	89.503	Carlito_syrichta
ENSJJAG00000019426	Cpsf4	100	88.263	ENSTSYG00000014604	-	100	88.263	Carlito_syrichta
ENSJJAG00000019426	Cpsf4	81	99.541	ENSCAPG00000013881	CPSF4	87	99.541	Cavia_aperea
ENSJJAG00000019426	Cpsf4	100	99.526	ENSCPOG00000001783	CPSF4	100	99.526	Cavia_porcellus
ENSJJAG00000019426	Cpsf4	100	99.257	ENSCCAG00000028291	CPSF4	100	99.257	Cebus_capucinus
ENSJJAG00000019426	Cpsf4	100	99.257	ENSCATG00000038440	CPSF4	100	99.257	Cercocebus_atys
ENSJJAG00000019426	Cpsf4	100	100.000	ENSCLAG00000007050	CPSF4	100	100.000	Chinchilla_lanigera
ENSJJAG00000019426	Cpsf4	100	99.257	ENSCSAG00000017795	CPSF4	100	99.257	Chlorocebus_sabaeus
ENSJJAG00000019426	Cpsf4	80	95.370	ENSCPBG00000020869	CPSF4	100	95.370	Chrysemys_picta_bellii
ENSJJAG00000019426	Cpsf4	61	81.212	ENSCPBG00000010269	-	100	80.723	Chrysemys_picta_bellii
ENSJJAG00000019426	Cpsf4	97	55.939	ENSCING00000021080	-	97	55.939	Ciona_intestinalis
ENSJJAG00000019426	Cpsf4	96	53.357	ENSCSAVG00000011469	-	97	53.025	Ciona_savignyi
ENSJJAG00000019426	Cpsf4	100	99.257	ENSCANG00000019384	CPSF4	100	99.257	Colobus_angolensis_palliatus
ENSJJAG00000019426	Cpsf4	100	99.526	ENSCGRG00001024184	Cpsf4	100	99.526	Cricetulus_griseus_chok1gshd
ENSJJAG00000019426	Cpsf4	100	99.628	ENSCGRG00000013892	Cpsf4	100	99.628	Cricetulus_griseus_crigri
ENSJJAG00000019426	Cpsf4	100	84.360	ENSCSEG00000019055	cpsf4	100	84.360	Cynoglossus_semilaevis
ENSJJAG00000019426	Cpsf4	100	83.704	ENSCVAG00000016528	cpsf4	100	83.704	Cyprinodon_variegatus
ENSJJAG00000019426	Cpsf4	100	85.240	ENSDARG00000020217	cpsf4	100	85.240	Danio_rerio
ENSJJAG00000019426	Cpsf4	100	99.257	ENSDNOG00000006344	CPSF4	100	99.257	Dasypus_novemcinctus
ENSJJAG00000019426	Cpsf4	81	99.078	ENSDORG00000000742	Cpsf4	100	99.078	Dipodomys_ordii
ENSJJAG00000019426	Cpsf4	100	54.795	FBgn0015621	Clp	99	54.110	Drosophila_melanogaster
ENSJJAG00000019426	Cpsf4	73	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSJJAG00000019426	Cpsf4	99	65.169	ENSEBUG00000012552	cpsf4	98	65.169	Eptatretus_burgeri
ENSJJAG00000019426	Cpsf4	100	90.335	ENSEASG00005002487	CPSF4	100	90.335	Equus_asinus_asinus
ENSJJAG00000019426	Cpsf4	100	99.628	ENSECAG00000007525	CPSF4	100	99.628	Equus_caballus
ENSJJAG00000019426	Cpsf4	68	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSJJAG00000019426	Cpsf4	100	82.847	ENSELUG00000011481	cpsf4	100	80.657	Esox_lucius
ENSJJAG00000019426	Cpsf4	100	99.628	ENSFCAG00000015070	CPSF4	100	99.628	Felis_catus
ENSJJAG00000019426	Cpsf4	61	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSJJAG00000019426	Cpsf4	100	85.874	ENSFALG00000013799	CPSF4	100	84.387	Ficedula_albicollis
ENSJJAG00000019426	Cpsf4	90	98.765	ENSFDAG00000014092	CPSF4	100	98.765	Fukomys_damarensis
ENSJJAG00000019426	Cpsf4	100	82.963	ENSFHEG00000010880	cpsf4	100	82.963	Fundulus_heteroclitus
ENSJJAG00000019426	Cpsf4	100	77.491	ENSGMOG00000002330	cpsf4	100	76.015	Gadus_morhua
ENSJJAG00000019426	Cpsf4	100	85.874	ENSGALG00000004714	CPSF4	100	84.758	Gallus_gallus
ENSJJAG00000019426	Cpsf4	99	38.421	ENSGALG00000004441	-	98	32.609	Gallus_gallus
ENSJJAG00000019426	Cpsf4	100	82.593	ENSGAFG00000010580	cpsf4	100	82.593	Gambusia_affinis
ENSJJAG00000019426	Cpsf4	100	77.122	ENSGACG00000007792	cpsf4	100	76.384	Gasterosteus_aculeatus
ENSJJAG00000019426	Cpsf4	100	95.539	ENSGAGG00000021835	CPSF4	100	95.539	Gopherus_agassizii
ENSJJAG00000019426	Cpsf4	68	76.923	ENSGAGG00000020579	-	92	81.212	Gopherus_agassizii
ENSJJAG00000019426	Cpsf4	100	99.257	ENSGGOG00000015131	CPSF4	100	99.257	Gorilla_gorilla
ENSJJAG00000019426	Cpsf4	100	83.704	ENSHBUG00000013699	cpsf4	100	83.704	Haplochromis_burtoni
ENSJJAG00000019426	Cpsf4	100	99.052	ENSHGLG00000017150	CPSF4	100	99.052	Heterocephalus_glaber_female
ENSJJAG00000019426	Cpsf4	100	70.616	ENSHGLG00100017302	-	100	68.720	Heterocephalus_glaber_male
ENSJJAG00000019426	Cpsf4	87	95.763	ENSHGLG00100009215	-	100	96.591	Heterocephalus_glaber_male
ENSJJAG00000019426	Cpsf4	100	80.741	ENSHCOG00000004397	cpsf4	100	80.741	Hippocampus_comes
ENSJJAG00000019426	Cpsf4	100	84.133	ENSIPUG00000017147	cpsf4	100	85.294	Ictalurus_punctatus
ENSJJAG00000019426	Cpsf4	100	99.628	ENSSTOG00000001688	CPSF4	100	99.628	Ictidomys_tridecemlineatus
ENSJJAG00000019426	Cpsf4	100	81.852	ENSKMAG00000015642	cpsf4	100	81.852	Kryptolebias_marmoratus
ENSJJAG00000019426	Cpsf4	100	60.741	ENSLACG00000018470	-	100	60.741	Latimeria_chalumnae
ENSJJAG00000019426	Cpsf4	100	89.259	ENSLACG00000010938	CPSF4	100	89.259	Latimeria_chalumnae
ENSJJAG00000019426	Cpsf4	100	89.591	ENSLOCG00000004814	cpsf4	100	89.591	Lepisosteus_oculatus
ENSJJAG00000019426	Cpsf4	100	99.257	ENSLAFG00000000159	CPSF4	100	99.257	Loxodonta_africana
ENSJJAG00000019426	Cpsf4	100	99.257	ENSMFAG00000001462	CPSF4	100	99.257	Macaca_fascicularis
ENSJJAG00000019426	Cpsf4	100	99.257	ENSMMUG00000019191	CPSF4	100	99.257	Macaca_mulatta
ENSJJAG00000019426	Cpsf4	100	99.257	ENSMNEG00000032306	CPSF4	100	99.257	Macaca_nemestrina
ENSJJAG00000019426	Cpsf4	100	99.257	ENSMLEG00000034721	CPSF4	100	99.257	Mandrillus_leucophaeus
ENSJJAG00000019426	Cpsf4	100	84.444	ENSMAMG00000006244	cpsf4	100	84.444	Mastacembelus_armatus
ENSJJAG00000019426	Cpsf4	100	83.704	ENSMZEG00005007515	cpsf4	100	83.704	Maylandia_zebra
ENSJJAG00000019426	Cpsf4	87	84.255	ENSMGAG00000004235	CPSF4	100	82.979	Meleagris_gallopavo
ENSJJAG00000019426	Cpsf4	100	99.628	ENSMAUG00000021253	Cpsf4	100	99.628	Mesocricetus_auratus
ENSJJAG00000019426	Cpsf4	100	99.257	ENSMICG00000017429	CPSF4	100	99.257	Microcebus_murinus
ENSJJAG00000019426	Cpsf4	100	99.628	ENSMOCG00000014901	Cpsf4	100	99.628	Microtus_ochrogaster
ENSJJAG00000019426	Cpsf4	100	85.308	ENSMMOG00000001813	cpsf4	100	85.308	Mola_mola
ENSJJAG00000019426	Cpsf4	100	97.026	ENSMODG00000001367	CPSF4	100	97.026	Monodelphis_domestica
ENSJJAG00000019426	Cpsf4	100	82.593	ENSMALG00000012611	cpsf4	100	82.963	Monopterus_albus
ENSJJAG00000019426	Cpsf4	100	99.628	MGP_CAROLIEiJ_G0028012	Cpsf4	100	99.628	Mus_caroli
ENSJJAG00000019426	Cpsf4	100	99.628	ENSMUSG00000029625	Cpsf4	100	99.628	Mus_musculus
ENSJJAG00000019426	Cpsf4	100	99.628	MGP_PahariEiJ_G0024581	Cpsf4	100	99.628	Mus_pahari
ENSJJAG00000019426	Cpsf4	100	99.628	MGP_SPRETEiJ_G0029013	Cpsf4	100	99.628	Mus_spretus
ENSJJAG00000019426	Cpsf4	100	99.628	ENSMPUG00000016508	CPSF4	100	99.628	Mustela_putorius_furo
ENSJJAG00000019426	Cpsf4	87	88.511	ENSMLUG00000010980	CPSF4	100	88.511	Myotis_lucifugus
ENSJJAG00000019426	Cpsf4	100	99.257	ENSNGAG00000001567	Cpsf4	100	99.257	Nannospalax_galili
ENSJJAG00000019426	Cpsf4	91	83.333	ENSNBRG00000003943	cpsf4	98	83.333	Neolamprologus_brichardi
ENSJJAG00000019426	Cpsf4	100	99.052	ENSNLEG00000011074	CPSF4	100	99.052	Nomascus_leucogenys
ENSJJAG00000019426	Cpsf4	100	97.026	ENSMEUG00000006955	CPSF4	100	97.026	Notamacropus_eugenii
ENSJJAG00000019426	Cpsf4	100	99.628	ENSOPRG00000013663	CPSF4	100	99.628	Ochotona_princeps
ENSJJAG00000019426	Cpsf4	98	78.774	ENSODEG00000018283	-	89	78.774	Octodon_degus
ENSJJAG00000019426	Cpsf4	100	99.628	ENSODEG00000011181	-	100	99.628	Octodon_degus
ENSJJAG00000019426	Cpsf4	100	74.725	ENSODEG00000009779	-	100	74.725	Octodon_degus
ENSJJAG00000019426	Cpsf4	100	83.704	ENSONIG00000008495	cpsf4	100	83.704	Oreochromis_niloticus
ENSJJAG00000019426	Cpsf4	87	95.319	ENSOANG00000007729	CPSF4	100	95.319	Ornithorhynchus_anatinus
ENSJJAG00000019426	Cpsf4	100	54.676	ENSOANG00000009568	-	100	53.237	Ornithorhynchus_anatinus
ENSJJAG00000019426	Cpsf4	100	99.628	ENSOCUG00000002437	CPSF4	70	99.628	Oryctolagus_cuniculus
ENSJJAG00000019426	Cpsf4	100	83.271	ENSORLG00000022798	cpsf4	100	83.271	Oryzias_latipes
ENSJJAG00000019426	Cpsf4	100	83.271	ENSORLG00020008548	cpsf4	100	83.271	Oryzias_latipes_hni
ENSJJAG00000019426	Cpsf4	100	82.900	ENSORLG00015019575	cpsf4	100	82.900	Oryzias_latipes_hsok
ENSJJAG00000019426	Cpsf4	100	83.886	ENSOMEG00000005176	cpsf4	100	83.886	Oryzias_melastigma
ENSJJAG00000019426	Cpsf4	100	99.628	ENSOGAG00000010884	CPSF4	100	99.628	Otolemur_garnettii
ENSJJAG00000019426	Cpsf4	100	88.278	ENSOARG00000018668	CPSF4	100	87.912	Ovis_aries
ENSJJAG00000019426	Cpsf4	100	98.885	ENSPPAG00000043355	CPSF4	100	98.885	Pan_paniscus
ENSJJAG00000019426	Cpsf4	100	99.628	ENSPPRG00000003134	CPSF4	100	99.628	Panthera_pardus
ENSJJAG00000019426	Cpsf4	90	99.587	ENSPTIG00000005604	CPSF4	90	99.587	Panthera_tigris_altaica
ENSJJAG00000019426	Cpsf4	100	98.885	ENSPTRG00000019453	CPSF4	100	98.885	Pan_troglodytes
ENSJJAG00000019426	Cpsf4	100	99.257	ENSPANG00000023123	CPSF4	100	99.257	Papio_anubis
ENSJJAG00000019426	Cpsf4	100	83.942	ENSPKIG00000014278	cpsf4	100	83.942	Paramormyrops_kingsleyae
ENSJJAG00000019426	Cpsf4	80	94.907	ENSPSIG00000011229	CPSF4	100	94.907	Pelodiscus_sinensis
ENSJJAG00000019426	Cpsf4	81	58.904	ENSPSIG00000018198	-	100	57.798	Pelodiscus_sinensis
ENSJJAG00000019426	Cpsf4	100	72.862	ENSPMGG00000017735	cpsf4	100	71.587	Periophthalmus_magnuspinnatus
ENSJJAG00000019426	Cpsf4	100	99.628	ENSPEMG00000004508	Cpsf4	100	99.628	Peromyscus_maniculatus_bairdii
ENSJJAG00000019426	Cpsf4	100	97.026	ENSPCIG00000024776	CPSF4	100	97.026	Phascolarctos_cinereus
ENSJJAG00000019426	Cpsf4	100	82.593	ENSPFOG00000014912	cpsf4	100	82.593	Poecilia_formosa
ENSJJAG00000019426	Cpsf4	100	75.465	ENSPLAG00000009599	cpsf4	100	75.465	Poecilia_latipinna
ENSJJAG00000019426	Cpsf4	100	82.593	ENSPMEG00000009790	cpsf4	100	82.593	Poecilia_mexicana
ENSJJAG00000019426	Cpsf4	100	81.852	ENSPREG00000018166	cpsf4	100	79.182	Poecilia_reticulata
ENSJJAG00000019426	Cpsf4	87	98.291	ENSPPYG00000017378	CPSF4	100	98.291	Pongo_abelii
ENSJJAG00000019426	Cpsf4	100	98.513	ENSPCAG00000001892	CPSF4	100	98.513	Procavia_capensis
ENSJJAG00000019426	Cpsf4	100	99.257	ENSPCOG00000012771	CPSF4	100	99.257	Propithecus_coquereli
ENSJJAG00000019426	Cpsf4	100	92.937	ENSPVAG00000007531	CPSF4	100	92.937	Pteropus_vampyrus
ENSJJAG00000019426	Cpsf4	100	83.704	ENSPNYG00000018559	cpsf4	100	83.704	Pundamilia_nyererei
ENSJJAG00000019426	Cpsf4	100	86.347	ENSPNAG00000003736	cpsf4	100	87.085	Pygocentrus_nattereri
ENSJJAG00000019426	Cpsf4	100	99.526	ENSRNOG00000000985	Cpsf4	100	99.526	Rattus_norvegicus
ENSJJAG00000019426	Cpsf4	87	99.145	ENSRBIG00000033886	CPSF4	100	99.145	Rhinopithecus_bieti
ENSJJAG00000019426	Cpsf4	100	99.052	ENSRROG00000040431	CPSF4	100	99.052	Rhinopithecus_roxellana
ENSJJAG00000019426	Cpsf4	100	99.257	ENSSBOG00000020493	CPSF4	100	99.257	Saimiri_boliviensis_boliviensis
ENSJJAG00000019426	Cpsf4	100	97.026	ENSSHAG00000011533	CPSF4	100	97.026	Sarcophilus_harrisii
ENSJJAG00000019426	Cpsf4	100	85.145	ENSSFOG00015007883	cpsf4	100	85.870	Scleropages_formosus
ENSJJAG00000019426	Cpsf4	100	79.182	ENSSMAG00000006374	cpsf4	100	77.695	Scophthalmus_maximus
ENSJJAG00000019426	Cpsf4	100	83.333	ENSSDUG00000018887	cpsf4	100	83.333	Seriola_dumerili
ENSJJAG00000019426	Cpsf4	100	83.333	ENSSLDG00000019078	cpsf4	100	83.333	Seriola_lalandi_dorsalis
ENSJJAG00000019426	Cpsf4	87	99.573	ENSSARG00000012416	CPSF4	100	99.573	Sorex_araneus
ENSJJAG00000019426	Cpsf4	100	94.052	ENSSPUG00000003549	CPSF4	100	94.052	Sphenodon_punctatus
ENSJJAG00000019426	Cpsf4	96	60.000	ENSSPUG00000014803	-	97	59.690	Sphenodon_punctatus
ENSJJAG00000019426	Cpsf4	100	79.182	ENSSPAG00000006174	cpsf4	100	76.952	Stegastes_partitus
ENSJJAG00000019426	Cpsf4	100	90.335	ENSSSCG00000026896	CPSF4	100	90.335	Sus_scrofa
ENSJJAG00000019426	Cpsf4	100	84.871	ENSTGUG00000007552	CPSF4	100	83.395	Taeniopygia_guttata
ENSJJAG00000019426	Cpsf4	100	81.319	ENSTRUG00000024220	cpsf4	100	81.319	Takifugu_rubripes
ENSJJAG00000019426	Cpsf4	100	80.370	ENSTNIG00000006265	cpsf4	100	81.852	Tetraodon_nigroviridis
ENSJJAG00000019426	Cpsf4	87	89.744	ENSTBEG00000011406	CPSF4	100	89.744	Tupaia_belangeri
ENSJJAG00000019426	Cpsf4	100	78.439	ENSTTRG00000003007	CPSF4	100	78.439	Tursiops_truncatus
ENSJJAG00000019426	Cpsf4	92	89.069	ENSUAMG00000008051	CPSF4	85	89.069	Ursus_americanus
ENSJJAG00000019426	Cpsf4	100	89.963	ENSUMAG00000009474	CPSF4	100	89.963	Ursus_maritimus
ENSJJAG00000019426	Cpsf4	100	89.963	ENSVVUG00000008824	CPSF4	100	89.963	Vulpes_vulpes
ENSJJAG00000019426	Cpsf4	100	88.172	ENSXETG00000009892	cpsf4	100	88.172	Xenopus_tropicalis
ENSJJAG00000019426	Cpsf4	99	60.821	ENSXETG00000004641	cpsf4l	99	60.821	Xenopus_tropicalis
ENSJJAG00000019426	Cpsf4	100	83.886	ENSXCOG00000016040	cpsf4	100	83.886	Xiphophorus_couchianus
ENSJJAG00000019426	Cpsf4	100	82.593	ENSXMAG00000024670	cpsf4	100	82.593	Xiphophorus_maculatus