EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSJJAG00000021859 (Gene tree)
Gene ID: 101595861
Gene Symbol: Usb1
Alias: AA960436
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Jaculus_jaculus
Status: putative
Strand: Minus strand
Length: 12187 bases
Position: chrJH725498.1:9783897-9796083
Accession: 101595861
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSJJAP00000021528	HVSL	PF09749.9	4.1e-66	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSJJAT00000028082	-	801	XM_004663505	ENSJJAP00000021528	266 (aa)	XP_004663562	UPI0003333FB4

Gene Model

Click here to download ENSJJAG00000021859's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSJJAG00000021859's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSJJAG00000021859	Usb1	100	85.019	ENSG00000103005	USB1	100	88.785	Homo_sapiens
ENSJJAG00000021859	Usb1	98	48.746	ENSAPOG00000011942	usb1	99	48.746	Acanthochromis_polyacanthus
ENSJJAG00000021859	Usb1	100	84.758	ENSAMEG00000017205	USB1	100	85.130	Ailuropoda_melanoleuca
ENSJJAG00000021859	Usb1	85	55.310	ENSACIG00000012234	usb1	99	52.030	Amphilophus_citrinellus
ENSJJAG00000021859	Usb1	85	54.185	ENSAOCG00000014831	usb1	99	49.466	Amphiprion_ocellaris
ENSJJAG00000021859	Usb1	85	54.626	ENSAPEG00000000296	usb1	99	49.822	Amphiprion_percula
ENSJJAG00000021859	Usb1	98	48.929	ENSATEG00000009348	usb1	99	49.286	Anabas_testudineus
ENSJJAG00000021859	Usb1	84	70.354	ENSAPLG00000002756	USB1	100	71.239	Anas_platyrhynchos
ENSJJAG00000021859	Usb1	85	62.882	ENSACAG00000015481	USB1	100	62.882	Anolis_carolinensis
ENSJJAG00000021859	Usb1	100	85.768	ENSANAG00000035640	USB1	100	85.768	Aotus_nancymaae
ENSJJAG00000021859	Usb1	84	54.018	ENSACLG00000020586	usb1	99	49.286	Astatotilapia_calliptera
ENSJJAG00000021859	Usb1	86	51.082	ENSAMXG00000040146	usb1	95	46.367	Astyanax_mexicanus
ENSJJAG00000021859	Usb1	100	84.270	ENSBTAG00000015758	USB1	100	84.270	Bos_taurus
ENSJJAG00000021859	Usb1	100	86.517	ENSCJAG00000011733	USB1	100	86.517	Callithrix_jacchus
ENSJJAG00000021859	Usb1	99	82.721	ENSCAFG00000008556	USB1	73	82.721	Canis_familiaris
ENSJJAG00000021859	Usb1	99	81.685	ENSCAFG00020009263	USB1	99	81.685	Canis_lupus_dingo
ENSJJAG00000021859	Usb1	100	83.521	ENSCHIG00000024290	USB1	100	83.521	Capra_hircus
ENSJJAG00000021859	Usb1	100	86.517	ENSTSYG00000006997	USB1	100	86.517	Carlito_syrichta
ENSJJAG00000021859	Usb1	87	72.727	ENSCAPG00000009057	USB1	100	72.727	Cavia_aperea
ENSJJAG00000021859	Usb1	100	84.644	ENSCPOG00000014325	USB1	100	84.644	Cavia_porcellus
ENSJJAG00000021859	Usb1	100	86.517	ENSCCAG00000022132	USB1	100	86.517	Cebus_capucinus
ENSJJAG00000021859	Usb1	100	85.019	ENSCATG00000032174	USB1	100	85.821	Cercocebus_atys
ENSJJAG00000021859	Usb1	66	89.773	ENSCLAG00000007363	USB1	100	89.773	Chinchilla_lanigera
ENSJJAG00000021859	Usb1	100	85.768	ENSCSAG00000004783	USB1	100	86.567	Chlorocebus_sabaeus
ENSJJAG00000021859	Usb1	90	66.250	ENSCPBG00000026943	USB1	100	63.121	Chrysemys_picta_bellii
ENSJJAG00000021859	Usb1	87	33.054	ENSCING00000011490	-	98	31.250	Ciona_intestinalis
ENSJJAG00000021859	Usb1	82	33.040	ENSCSAVG00000000894	-	81	33.040	Ciona_savignyi
ENSJJAG00000021859	Usb1	100	84.270	ENSCANG00000037135	USB1	100	85.075	Colobus_angolensis_palliatus
ENSJJAG00000021859	Usb1	100	87.313	ENSCGRG00001011243	USB1	100	87.313	Cricetulus_griseus_chok1gshd
ENSJJAG00000021859	Usb1	100	87.313	ENSCGRG00000013252	USB1	100	87.313	Cricetulus_griseus_crigri
ENSJJAG00000021859	Usb1	98	48.727	ENSCSEG00000013881	usb1	99	48.727	Cynoglossus_semilaevis
ENSJJAG00000021859	Usb1	84	50.000	ENSCVAG00000009252	usb1	97	50.439	Cyprinodon_variegatus
ENSJJAG00000021859	Usb1	89	49.791	ENSDARG00000003841	usb1	99	46.182	Danio_rerio
ENSJJAG00000021859	Usb1	100	83.521	ENSDORG00000001888	Usb1	100	83.521	Dipodomys_ordii
ENSJJAG00000021859	Usb1	84	37.131	FBgn0037713	CG16790	97	36.029	Drosophila_melanogaster
ENSJJAG00000021859	Usb1	100	71.161	ENSETEG00000019682	USB1	100	71.161	Echinops_telfairi
ENSJJAG00000021859	Usb1	83	50.901	ENSEBUG00000005889	usb1	78	50.901	Eptatretus_burgeri
ENSJJAG00000021859	Usb1	100	86.891	ENSEASG00005005484	USB1	100	86.891	Equus_asinus_asinus
ENSJJAG00000021859	Usb1	100	86.517	ENSECAG00000019493	USB1	91	86.517	Equus_caballus
ENSJJAG00000021859	Usb1	66	80.682	ENSEEUG00000000154	USB1	100	62.030	Erinaceus_europaeus
ENSJJAG00000021859	Usb1	85	50.870	ENSELUG00000010974	usb1	99	47.273	Esox_lucius
ENSJJAG00000021859	Usb1	100	86.142	ENSFCAG00000002693	USB1	100	86.142	Felis_catus
ENSJJAG00000021859	Usb1	99	60.300	ENSFALG00000006876	USB1	99	60.300	Ficedula_albicollis
ENSJJAG00000021859	Usb1	100	85.019	ENSFDAG00000010052	USB1	100	85.019	Fukomys_damarensis
ENSJJAG00000021859	Usb1	85	47.951	ENSFHEG00000012334	usb1	96	48.770	Fundulus_heteroclitus
ENSJJAG00000021859	Usb1	83	51.802	ENSGMOG00000004228	usb1	99	51.802	Gadus_morhua
ENSJJAG00000021859	Usb1	83	67.857	ENSGALG00000035604	USB1	99	63.534	Gallus_gallus
ENSJJAG00000021859	Usb1	98	49.091	ENSGAFG00000021890	usb1	99	49.091	Gambusia_affinis
ENSJJAG00000021859	Usb1	84	53.125	ENSGACG00000003257	usb1	99	49.458	Gasterosteus_aculeatus
ENSJJAG00000021859	Usb1	100	63.504	ENSGAGG00000022572	USB1	100	63.504	Gopherus_agassizii
ENSJJAG00000021859	Usb1	100	85.393	ENSGGOG00000017147	USB1	100	85.393	Gorilla_gorilla
ENSJJAG00000021859	Usb1	85	54.185	ENSHBUG00000009823	usb1	99	49.821	Haplochromis_burtoni
ENSJJAG00000021859	Usb1	100	85.393	ENSHGLG00000016078	USB1	98	85.393	Heterocephalus_glaber_female
ENSJJAG00000021859	Usb1	100	85.393	ENSHGLG00100005562	USB1	98	85.393	Heterocephalus_glaber_male
ENSJJAG00000021859	Usb1	81	54.630	ENSHCOG00000015633	usb1	99	50.575	Hippocampus_comes
ENSJJAG00000021859	Usb1	84	54.018	ENSIPUG00000008601	usb1	99	48.097	Ictalurus_punctatus
ENSJJAG00000021859	Usb1	100	84.615	ENSSTOG00000007548	USB1	100	84.982	Ictidomys_tridecemlineatus
ENSJJAG00000021859	Usb1	85	53.304	ENSKMAG00000007200	usb1	99	48.571	Kryptolebias_marmoratus
ENSJJAG00000021859	Usb1	74	53.030	ENSLBEG00000008452	usb1	82	47.951	Labrus_bergylta
ENSJJAG00000021859	Usb1	94	54.545	ENSLACG00000000105	USB1	92	56.604	Latimeria_chalumnae
ENSJJAG00000021859	Usb1	94	54.118	ENSLOCG00000000465	usb1	99	51.957	Lepisosteus_oculatus
ENSJJAG00000021859	Usb1	100	66.296	ENSLAFG00000002267	USB1	100	66.667	Loxodonta_africana
ENSJJAG00000021859	Usb1	100	85.393	ENSMFAG00000003926	USB1	100	86.194	Macaca_fascicularis
ENSJJAG00000021859	Usb1	100	85.393	ENSMMUG00000022669	USB1	100	86.194	Macaca_mulatta
ENSJJAG00000021859	Usb1	100	85.019	ENSMNEG00000042487	USB1	100	85.821	Macaca_nemestrina
ENSJJAG00000021859	Usb1	100	85.393	ENSMLEG00000028756	USB1	100	86.194	Mandrillus_leucophaeus
ENSJJAG00000021859	Usb1	98	49.640	ENSMAMG00000015092	usb1	99	49.640	Mastacembelus_armatus
ENSJJAG00000021859	Usb1	84	54.018	ENSMZEG00005010008	usb1	99	49.821	Maylandia_zebra
ENSJJAG00000021859	Usb1	100	87.640	ENSMAUG00000007832	Usb1	100	87.640	Mesocricetus_auratus
ENSJJAG00000021859	Usb1	100	85.019	ENSMICG00000004900	USB1	100	86.142	Microcebus_murinus
ENSJJAG00000021859	Usb1	100	86.142	ENSMOCG00000022647	Usb1	100	86.142	Microtus_ochrogaster
ENSJJAG00000021859	Usb1	86	52.838	ENSMMOG00000000490	usb1	99	51.145	Mola_mola
ENSJJAG00000021859	Usb1	100	65.683	ENSMODG00000014067	USB1	100	67.528	Monodelphis_domestica
ENSJJAG00000021859	Usb1	85	55.066	ENSMALG00000005930	usb1	99	49.466	Monopterus_albus
ENSJJAG00000021859	Usb1	100	86.891	MGP_CAROLIEiJ_G0031421	Usb1	100	86.891	Mus_caroli
ENSJJAG00000021859	Usb1	100	86.891	ENSMUSG00000031792	Usb1	100	86.891	Mus_musculus
ENSJJAG00000021859	Usb1	100	86.142	MGP_PahariEiJ_G0023019	Usb1	100	86.325	Mus_pahari
ENSJJAG00000021859	Usb1	100	86.142	MGP_SPRETEiJ_G0032540	Usb1	100	86.142	Mus_spretus
ENSJJAG00000021859	Usb1	100	83.271	ENSMPUG00000004684	USB1	96	83.271	Mustela_putorius_furo
ENSJJAG00000021859	Usb1	86	90.476	ENSMLUG00000007400	USB1	100	90.476	Myotis_lucifugus
ENSJJAG00000021859	Usb1	100	90.706	ENSNGAG00000009703	Usb1	100	90.706	Nannospalax_galili
ENSJJAG00000021859	Usb1	87	48.276	ENSNBRG00000008747	usb1	99	52.804	Neolamprologus_brichardi
ENSJJAG00000021859	Usb1	94	84.921	ENSNLEG00000003340	USB1	100	84.921	Nomascus_leucogenys
ENSJJAG00000021859	Usb1	56	59.477	ENSMEUG00000003328	-	100	60.784	Notamacropus_eugenii
ENSJJAG00000021859	Usb1	63	94.118	ENSOPRG00000011803	USB1	72	94.118	Ochotona_princeps
ENSJJAG00000021859	Usb1	100	83.835	ENSODEG00000016214	USB1	100	83.835	Octodon_degus
ENSJJAG00000021859	Usb1	98	50.000	ENSONIG00000011063	usb1	99	50.000	Oreochromis_niloticus
ENSJJAG00000021859	Usb1	84	72.444	ENSOANG00000012118	USB1	94	72.444	Ornithorhynchus_anatinus
ENSJJAG00000021859	Usb1	84	51.339	ENSORLG00000012479	usb1	99	47.426	Oryzias_latipes
ENSJJAG00000021859	Usb1	84	51.339	ENSORLG00020018671	usb1	99	46.154	Oryzias_latipes_hni
ENSJJAG00000021859	Usb1	84	51.339	ENSORLG00015009679	usb1	99	46.691	Oryzias_latipes_hsok
ENSJJAG00000021859	Usb1	84	51.786	ENSOMEG00000012930	usb1	99	46.545	Oryzias_melastigma
ENSJJAG00000021859	Usb1	100	80.150	ENSOGAG00000003273	USB1	100	80.150	Otolemur_garnettii
ENSJJAG00000021859	Usb1	92	83.806	ENSOARG00000001107	USB1	95	83.806	Ovis_aries
ENSJJAG00000021859	Usb1	100	85.768	ENSPPAG00000042137	USB1	100	85.768	Pan_paniscus
ENSJJAG00000021859	Usb1	100	86.142	ENSPPRG00000024797	USB1	100	86.142	Panthera_pardus
ENSJJAG00000021859	Usb1	100	86.142	ENSPTIG00000007506	USB1	100	86.142	Panthera_tigris_altaica
ENSJJAG00000021859	Usb1	100	78.652	ENSPTRG00000008172	USB1	100	89.252	Pan_troglodytes
ENSJJAG00000021859	Usb1	100	85.393	ENSPANG00000025138	USB1	100	86.194	Papio_anubis
ENSJJAG00000021859	Usb1	90	52.263	ENSPKIG00000015109	usb1	99	47.619	Paramormyrops_kingsleyae
ENSJJAG00000021859	Usb1	84	52.000	ENSPSIG00000004305	USB1	100	52.000	Pelodiscus_sinensis
ENSJJAG00000021859	Usb1	84	52.889	ENSPMGG00000017725	usb1	98	49.430	Periophthalmus_magnuspinnatus
ENSJJAG00000021859	Usb1	100	85.662	ENSPEMG00000016183	Usb1	100	85.662	Peromyscus_maniculatus_bairdii
ENSJJAG00000021859	Usb1	84	51.327	ENSPMAG00000000462	usb1	95	51.327	Petromyzon_marinus
ENSJJAG00000021859	Usb1	98	48.913	ENSPFOG00000011130	usb1	99	48.913	Poecilia_formosa
ENSJJAG00000021859	Usb1	98	48.551	ENSPLAG00000009820	usb1	99	48.551	Poecilia_latipinna
ENSJJAG00000021859	Usb1	98	48.551	ENSPMEG00000006402	usb1	99	48.551	Poecilia_mexicana
ENSJJAG00000021859	Usb1	85	48.760	ENSPREG00000001047	usb1	98	49.174	Poecilia_reticulata
ENSJJAG00000021859	Usb1	95	81.496	ENSPPYG00000007401	USB1	100	81.496	Pongo_abelii
ENSJJAG00000021859	Usb1	100	87.266	ENSPCOG00000022612	USB1	100	87.266	Propithecus_coquereli
ENSJJAG00000021859	Usb1	100	82.022	ENSPVAG00000004613	USB1	100	82.022	Pteropus_vampyrus
ENSJJAG00000021859	Usb1	85	54.185	ENSPNYG00000022262	usb1	99	50.179	Pundamilia_nyererei
ENSJJAG00000021859	Usb1	89	50.209	ENSPNAG00000011736	usb1	99	46.416	Pygocentrus_nattereri
ENSJJAG00000021859	Usb1	100	88.015	ENSRNOG00000013216	Usb1	100	88.015	Rattus_norvegicus
ENSJJAG00000021859	Usb1	100	79.401	ENSRBIG00000044466	USB1	100	90.654	Rhinopithecus_bieti
ENSJJAG00000021859	Usb1	100	85.393	ENSRROG00000029211	USB1	100	86.194	Rhinopithecus_roxellana
ENSJJAG00000021859	Usb1	100	85.768	ENSSBOG00000029362	USB1	100	85.768	Saimiri_boliviensis_boliviensis
ENSJJAG00000021859	Usb1	82	74.886	ENSSHAG00000006993	USB1	99	70.635	Sarcophilus_harrisii
ENSJJAG00000021859	Usb1	97	54.615	ENSSFOG00015023663	usb1	91	52.083	Scleropages_formosus
ENSJJAG00000021859	Usb1	97	48.529	ENSSMAG00000015834	usb1	99	47.619	Scophthalmus_maximus
ENSJJAG00000021859	Usb1	85	55.310	ENSSDUG00000002949	usb1	99	51.103	Seriola_dumerili
ENSJJAG00000021859	Usb1	84	55.357	ENSSLDG00000014174	usb1	99	48.746	Seriola_lalandi_dorsalis
ENSJJAG00000021859	Usb1	78	69.231	ENSSPUG00000006741	USB1	97	69.231	Sphenodon_punctatus
ENSJJAG00000021859	Usb1	98	46.290	ENSSPAG00000007484	usb1	99	48.057	Stegastes_partitus
ENSJJAG00000021859	Usb1	100	85.130	ENSSSCG00000002807	USB1	100	85.130	Sus_scrofa
ENSJJAG00000021859	Usb1	80	68.056	ENSTGUG00000004792	USB1	99	61.798	Taeniopygia_guttata
ENSJJAG00000021859	Usb1	98	49.442	ENSTRUG00000021069	usb1	99	49.442	Takifugu_rubripes
ENSJJAG00000021859	Usb1	98	49.049	ENSTNIG00000000626	usb1	98	49.049	Tetraodon_nigroviridis
ENSJJAG00000021859	Usb1	87	61.207	ENSTBEG00000001507	USB1	100	61.207	Tupaia_belangeri
ENSJJAG00000021859	Usb1	100	84.015	ENSUAMG00000016823	USB1	100	84.387	Ursus_americanus
ENSJJAG00000021859	Usb1	80	87.383	ENSUMAG00000021369	USB1	100	87.383	Ursus_maritimus
ENSJJAG00000021859	Usb1	77	60.784	ENSVPAG00000009834	-	100	60.784	Vicugna_pacos
ENSJJAG00000021859	Usb1	99	84.328	ENSVVUG00000023700	USB1	93	86.307	Vulpes_vulpes
ENSJJAG00000021859	Usb1	81	58.716	ENSXETG00000013795	usb1	99	53.817	Xenopus_tropicalis
ENSJJAG00000021859	Usb1	85	52.193	ENSXMAG00000024687	usb1	80	48.980	Xiphophorus_maculatus