EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSJJAG00000022108 (Gene tree)
Gene ID: -
Gene Symbol: Apobec1
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme%2C catalytic polypeptide 1
Gene Type: protein_coding
Species: Jaculus_jaculus
Status: putative
Strand: Plus strand
Length: 9022 bases
Position: chrJH725563.1:250543-259564
Accession: 103298
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSJJAP00000021885	APOBEC_N	PF08210.11	5.4e-29	1	1
ENSJJAP00000021885	APOBEC_C	PF05240.14	1.1e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSJJAT00000028444	-	690	-	ENSJJAP00000021885	229 (aa)	-	-
ENSJJAT00000028446	-	129	-	ENSJJAP00000021887	43 (aa)	-	-

Gene Model

Click here to download ENSJJAG00000022108's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSJJAG00000022108's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSJJAG00000022108	Apobec1	59	31.915	ENSJJAG00000000908	Aicda	77	31.915
ENSJJAG00000022108	Apobec1	55	32.031	ENSJJAG00000016840	-	64	32.031

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSJJAG00000022108	Apobec1	100	75.109	ENSG00000111701	APOBEC1	97	75.109	Homo_sapiens
ENSJJAG00000022108	Apobec1	99	73.894	ENSAMEG00000007098	APOBEC1	96	73.894	Ailuropoda_melanoleuca
ENSJJAG00000022108	Apobec1	67	42.208	ENSACAG00000028578	-	84	42.208	Anolis_carolinensis
ENSJJAG00000022108	Apobec1	100	73.799	ENSANAG00000027743	APOBEC1	92	73.799	Aotus_nancymaae
ENSJJAG00000022108	Apobec1	100	72.052	ENSBTAG00000014683	APOBEC1	97	72.052	Bos_taurus
ENSJJAG00000022108	Apobec1	93	75.234	ENSCJAG00000005398	APOBEC1	97	75.234	Callithrix_jacchus
ENSJJAG00000022108	Apobec1	100	73.362	ENSCAFG00000013901	APOBEC1	97	73.362	Canis_familiaris
ENSJJAG00000022108	Apobec1	96	72.603	ENSCAFG00020003511	APOBEC1	92	72.603	Canis_lupus_dingo
ENSJJAG00000022108	Apobec1	98	70.536	ENSCHIG00000011898	APOBEC1	93	70.536	Capra_hircus
ENSJJAG00000022108	Apobec1	61	78.417	ENSTSYG00000029141	APOBEC1	99	78.417	Carlito_syrichta
ENSJJAG00000022108	Apobec1	93	66.355	ENSCAPG00000015882	-	99	66.355	Cavia_aperea
ENSJJAG00000022108	Apobec1	100	64.192	ENSCPOG00000033068	APOBEC1	97	64.192	Cavia_porcellus
ENSJJAG00000022108	Apobec1	100	74.672	ENSCCAG00000022258	APOBEC1	97	74.672	Cebus_capucinus
ENSJJAG00000022108	Apobec1	100	75.109	ENSCATG00000021613	APOBEC1	92	75.109	Cercocebus_atys
ENSJJAG00000022108	Apobec1	100	68.996	ENSCLAG00000014645	APOBEC1	99	68.996	Chinchilla_lanigera
ENSJJAG00000022108	Apobec1	79	75.691	ENSCSAG00000009817	APOBEC1	95	75.691	Chlorocebus_sabaeus
ENSJJAG00000022108	Apobec1	79	44.681	ENSCPBG00000017398	-	82	44.681	Chrysemys_picta_bellii
ENSJJAG00000022108	Apobec1	85	44.828	ENSCPBG00000014335	-	82	44.828	Chrysemys_picta_bellii
ENSJJAG00000022108	Apobec1	79	45.355	ENSCPBG00000014331	-	76	45.355	Chrysemys_picta_bellii
ENSJJAG00000022108	Apobec1	92	41.589	ENSCPBG00000014327	-	85	37.674	Chrysemys_picta_bellii
ENSJJAG00000022108	Apobec1	88	44.059	ENSCPBG00000014329	-	55	44.059	Chrysemys_picta_bellii
ENSJJAG00000022108	Apobec1	85	43.147	ENSCPBG00000014328	-	86	43.147	Chrysemys_picta_bellii
ENSJJAG00000022108	Apobec1	97	75.225	ENSCANG00000038359	APOBEC1	97	75.225	Colobus_angolensis_palliatus
ENSJJAG00000022108	Apobec1	100	70.742	ENSCGRG00001011130	Apobec1	100	70.742	Cricetulus_griseus_chok1gshd
ENSJJAG00000022108	Apobec1	100	70.742	ENSCGRG00000008644	Apobec1	100	70.742	Cricetulus_griseus_crigri
ENSJJAG00000022108	Apobec1	100	71.616	ENSDNOG00000010926	APOBEC1	97	71.616	Dasypus_novemcinctus
ENSJJAG00000022108	Apobec1	93	64.019	ENSDORG00000023717	Apobec1	100	64.019	Dipodomys_ordii
ENSJJAG00000022108	Apobec1	100	71.304	ENSETEG00000004867	APOBEC1	97	71.304	Echinops_telfairi
ENSJJAG00000022108	Apobec1	99	75.221	ENSEASG00005015951	APOBEC1	95	75.221	Equus_asinus_asinus
ENSJJAG00000022108	Apobec1	79	76.243	ENSECAG00000017163	APOBEC1	95	76.243	Equus_caballus
ENSJJAG00000022108	Apobec1	89	49.510	ENSEEUG00000007530	-	97	49.510	Erinaceus_europaeus
ENSJJAG00000022108	Apobec1	94	59.259	ENSEEUG00000009112	-	96	59.259	Erinaceus_europaeus
ENSJJAG00000022108	Apobec1	100	76.856	ENSFCAG00000009350	APOBEC1	97	76.856	Felis_catus
ENSJJAG00000022108	Apobec1	62	47.887	ENSFALG00000007257	-	70	47.887	Ficedula_albicollis
ENSJJAG00000022108	Apobec1	88	57.214	ENSFDAG00000018470	APOBEC1	97	57.214	Fukomys_damarensis
ENSJJAG00000022108	Apobec1	74	45.930	ENSGAGG00000006624	-	62	45.930	Gopherus_agassizii
ENSJJAG00000022108	Apobec1	93	46.047	ENSGAGG00000011837	-	87	51.754	Gopherus_agassizii
ENSJJAG00000022108	Apobec1	81	39.153	ENSGAGG00000021745	-	67	40.110	Gopherus_agassizii
ENSJJAG00000022108	Apobec1	93	38.710	ENSGAGG00000021744	-	84	38.710	Gopherus_agassizii
ENSJJAG00000022108	Apobec1	69	47.826	ENSGAGG00000004947	-	75	52.991	Gopherus_agassizii
ENSJJAG00000022108	Apobec1	100	63.755	ENSHGLG00000001495	APOBEC1	97	63.755	Heterocephalus_glaber_female
ENSJJAG00000022108	Apobec1	100	62.882	ENSHGLG00100002187	APOBEC1	97	62.882	Heterocephalus_glaber_male
ENSJJAG00000022108	Apobec1	93	62.617	ENSSTOG00000021971	APOBEC1	100	75.510	Ictidomys_tridecemlineatus
ENSJJAG00000022108	Apobec1	94	69.907	ENSLAFG00000030837	APOBEC1	97	69.907	Loxodonta_africana
ENSJJAG00000022108	Apobec1	100	75.109	ENSMFAG00000000277	APOBEC1	97	75.109	Macaca_fascicularis
ENSJJAG00000022108	Apobec1	100	75.109	ENSMNEG00000029670	APOBEC1	97	75.109	Macaca_nemestrina
ENSJJAG00000022108	Apobec1	100	75.109	ENSMLEG00000036301	APOBEC1	97	75.109	Mandrillus_leucophaeus
ENSJJAG00000022108	Apobec1	94	71.296	ENSMAUG00000022167	Apobec1	97	71.296	Mesocricetus_auratus
ENSJJAG00000022108	Apobec1	100	72.489	ENSMICG00000043645	APOBEC1	97	72.489	Microcebus_murinus
ENSJJAG00000022108	Apobec1	100	63.319	ENSMODG00000018004	APOBEC1	97	63.319	Monodelphis_domestica
ENSJJAG00000022108	Apobec1	99	70.175	ENSMUSG00000040613	Apobec1	99	70.175	Mus_musculus
ENSJJAG00000022108	Apobec1	99	68.421	MGP_PahariEiJ_G0022580	-	99	68.421	Mus_pahari
ENSJJAG00000022108	Apobec1	99	70.175	MGP_SPRETEiJ_G0029857	Apobec1	99	70.175	Mus_spretus
ENSJJAG00000022108	Apobec1	100	74.672	ENSMPUG00000017532	APOBEC1	97	74.672	Mustela_putorius_furo
ENSJJAG00000022108	Apobec1	100	71.616	ENSNGAG00000022607	Apobec1	100	71.616	Nannospalax_galili
ENSJJAG00000022108	Apobec1	100	75.546	ENSNLEG00000005342	APOBEC1	97	75.546	Nomascus_leucogenys
ENSJJAG00000022108	Apobec1	100	60.699	ENSMEUG00000013406	APOBEC1	97	60.699	Notamacropus_eugenii
ENSJJAG00000022108	Apobec1	79	61.667	ENSOPRG00000009508	-	99	61.667	Ochotona_princeps
ENSJJAG00000022108	Apobec1	100	71.616	ENSOCUG00000025736	APOBEC1	86	71.616	Oryctolagus_cuniculus
ENSJJAG00000022108	Apobec1	99	71.239	ENSOGAG00000026415	APOBEC1	96	71.239	Otolemur_garnettii
ENSJJAG00000022108	Apobec1	100	70.742	ENSOARG00000002072	APOBEC1	96	70.742	Ovis_aries
ENSJJAG00000022108	Apobec1	99	69.469	ENSPPAG00000027657	APOBEC1	95	69.469	Pan_paniscus
ENSJJAG00000022108	Apobec1	100	76.419	ENSPPRG00000012182	APOBEC1	97	76.419	Panthera_pardus
ENSJJAG00000022108	Apobec1	100	76.419	ENSPTIG00000020280	APOBEC1	97	76.419	Panthera_tigris_altaica
ENSJJAG00000022108	Apobec1	100	75.546	ENSPTRG00000004614	APOBEC1	97	75.546	Pan_troglodytes
ENSJJAG00000022108	Apobec1	100	75.546	ENSPANG00000021027	APOBEC1	97	75.546	Papio_anubis
ENSJJAG00000022108	Apobec1	55	51.786	ENSPSIG00000012791	-	72	51.786	Pelodiscus_sinensis
ENSJJAG00000022108	Apobec1	75	45.714	ENSPSIG00000012568	-	75	45.714	Pelodiscus_sinensis
ENSJJAG00000022108	Apobec1	100	71.179	ENSPEMG00000023841	Apobec1	100	71.179	Peromyscus_maniculatus_bairdii
ENSJJAG00000022108	Apobec1	100	64.629	ENSPCIG00000023973	APOBEC1	97	64.629	Phascolarctos_cinereus
ENSJJAG00000022108	Apobec1	100	73.799	ENSPPYG00000004228	APOBEC1	92	73.799	Pongo_abelii
ENSJJAG00000022108	Apobec1	82	71.123	ENSPCAG00000008733	APOBEC1	100	71.123	Procavia_capensis
ENSJJAG00000022108	Apobec1	94	73.953	ENSPCOG00000013957	APOBEC1	95	73.953	Propithecus_coquereli
ENSJJAG00000022108	Apobec1	100	61.572	ENSPVAG00000010709	APOBEC1	97	61.572	Pteropus_vampyrus
ENSJJAG00000022108	Apobec1	99	71.053	ENSRNOG00000015411	Apobec1	99	71.053	Rattus_norvegicus
ENSJJAG00000022108	Apobec1	100	74.672	ENSRBIG00000031161	APOBEC1	97	74.672	Rhinopithecus_bieti
ENSJJAG00000022108	Apobec1	100	74.672	ENSRROG00000033576	APOBEC1	97	74.672	Rhinopithecus_roxellana
ENSJJAG00000022108	Apobec1	76	75.723	ENSSBOG00000030587	APOBEC1	98	75.723	Saimiri_boliviensis_boliviensis
ENSJJAG00000022108	Apobec1	96	65.753	ENSSHAG00000008925	APOBEC1	96	65.753	Sarcophilus_harrisii
ENSJJAG00000022108	Apobec1	58	65.909	ENSSARG00000011972	-	100	65.909	Sorex_araneus
ENSJJAG00000022108	Apobec1	75	62.791	ENSSARG00000000032	-	100	62.791	Sorex_araneus
ENSJJAG00000022108	Apobec1	91	41.981	ENSSPUG00000009044	-	81	41.981	Sphenodon_punctatus
ENSJJAG00000022108	Apobec1	100	75.546	ENSSSCG00000000668	APOBEC1	97	75.546	Sus_scrofa
ENSJJAG00000022108	Apobec1	62	50.000	ENSTGUG00000013118	-	99	50.000	Taeniopygia_guttata
ENSJJAG00000022108	Apobec1	100	66.376	ENSTBEG00000010043	APOBEC1	97	66.376	Tupaia_belangeri
ENSJJAG00000022108	Apobec1	82	73.262	ENSTTRG00000014015	APOBEC1	100	73.262	Tursiops_truncatus
ENSJJAG00000022108	Apobec1	99	73.451	ENSUAMG00000011636	APOBEC1	93	73.451	Ursus_americanus
ENSJJAG00000022108	Apobec1	99	73.451	ENSUMAG00000016552	APOBEC1	93	73.451	Ursus_maritimus
ENSJJAG00000022108	Apobec1	100	71.616	ENSVPAG00000001343	APOBEC1	97	71.616	Vicugna_pacos
ENSJJAG00000022108	Apobec1	100	73.799	ENSVVUG00000010522	APOBEC1	97	73.799	Vulpes_vulpes