EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSJJAG00000022406 (Gene tree)
Gene ID: 101604030
Gene Symbol: Pabpc1l
Alias: 1810053B01Rik|ePAB
Full Name: poly(A) binding protein cytoplasmic 1 like
Gene Type: protein_coding
Species: Jaculus_jaculus
Status: putative
Strand: Plus strand
Length: 29921 bases
Position: chrJH725565.1:5665272-5695192
Accession: 101604030
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSJJAP00000022315	PABP	PF00658.18	1e-25	1	1
ENSJJAP00000022315	RRM_5	PF13893.6	8.9e-11	1	2
ENSJJAP00000022315	RRM_5	PF13893.6	8.9e-11	2	2
ENSJJAP00000022315	RRM_1	PF00076.22	2.3e-74	1	4
ENSJJAP00000022315	RRM_1	PF00076.22	2.3e-74	2	4
ENSJJAP00000022315	RRM_1	PF00076.22	2.3e-74	3	4
ENSJJAP00000022315	RRM_1	PF00076.22	2.3e-74	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSJJAT00000028880	-	1644	XM_004669278	ENSJJAP00000022315	547 (aa)	XP_004669335	-

Gene Model

Click here to download ENSJJAG00000022406's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSJJAG00000022406's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSJJAG00000022406	Pabpc1l	54	35.294	ENSJJAG00000020104	Celf3	67	32.710
ENSJJAG00000022406	Pabpc1l	98	50.409	ENSJJAG00000019230	Pabpc6	97	50.409
ENSJJAG00000022406	Pabpc1l	99	48.382	ENSJJAG00000014258	Pabpc2	98	49.365
ENSJJAG00000022406	Pabpc1l	51	30.675	ENSJJAG00000006954	Hnrnpa0	52	30.864
ENSJJAG00000022406	Pabpc1l	55	43.284	ENSJJAG00000007037	-	99	43.284
ENSJJAG00000022406	Pabpc1l	54	36.047	ENSJJAG00000016892	Celf4	56	36.170
ENSJJAG00000022406	Pabpc1l	66	30.769	ENSJJAG00000008247	Elavl2	88	30.769
ENSJJAG00000022406	Pabpc1l	58	31.579	ENSJJAG00000015838	Elavl1	98	31.579
ENSJJAG00000022406	Pabpc1l	56	56.808	ENSJJAG00000011960	Pabpc5	99	56.808
ENSJJAG00000022406	Pabpc1l	98	49.841	ENSJJAG00000007781	Pabpc4	96	51.332
ENSJJAG00000022406	Pabpc1l	55	46.111	ENSJJAG00000004090	Pabpc4l	97	49.324
ENSJJAG00000022406	Pabpc1l	99	52.885	ENSJJAG00000015918	Pabpc1	97	54.545

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSJJAG00000022406	Pabpc1l	99	64.123	ENSG00000101104	PABPC1L	99	67.818	Homo_sapiens
ENSJJAG00000022406	Pabpc1l	98	50.560	ENSAPOG00000010842	pabpc1l	98	52.050	Acanthochromis_polyacanthus
ENSJJAG00000022406	Pabpc1l	98	57.231	ENSAMEG00000004099	PABPC1L	99	59.380	Ailuropoda_melanoleuca
ENSJJAG00000022406	Pabpc1l	99	50.238	ENSACIG00000021004	-	99	52.043	Amphilophus_citrinellus
ENSJJAG00000022406	Pabpc1l	99	49.921	ENSAOCG00000006167	-	99	51.670	Amphiprion_ocellaris
ENSJJAG00000022406	Pabpc1l	99	51.696	ENSAPEG00000010558	-	99	52.984	Amphiprion_percula
ENSJJAG00000022406	Pabpc1l	99	53.597	ENSATEG00000007428	pabpc1l	99	53.597	Anabas_testudineus
ENSJJAG00000022406	Pabpc1l	99	57.258	ENSAPLG00000008415	PABPC1L	98	58.407	Anas_platyrhynchos
ENSJJAG00000022406	Pabpc1l	100	56.537	ENSACAG00000011841	PABPC1L	99	56.537	Anolis_carolinensis
ENSJJAG00000022406	Pabpc1l	99	64.321	ENSANAG00000026826	PABPC1L	99	67.523	Aotus_nancymaae
ENSJJAG00000022406	Pabpc1l	99	50.637	ENSACLG00000024791	pabpc1l	99	51.957	Astatotilapia_calliptera
ENSJJAG00000022406	Pabpc1l	99	53.110	ENSAMXG00000013552	pabpc1l	99	55.135	Astyanax_mexicanus
ENSJJAG00000022406	Pabpc1l	54	48.969	ENSBTAG00000055300	-	99	48.969	Bos_taurus
ENSJJAG00000022406	Pabpc1l	50	73.790	ENSBTAG00000016849	PABPC1L	75	73.790	Bos_taurus
ENSJJAG00000022406	Pabpc1l	54	43.878	ENSCJAG00000038506	-	97	43.878	Callithrix_jacchus
ENSJJAG00000022406	Pabpc1l	99	64.812	ENSCJAG00000017628	PABPC1L	97	70.139	Callithrix_jacchus
ENSJJAG00000022406	Pabpc1l	98	55.435	ENSCAFG00000009573	PABPC1L	99	57.093	Canis_familiaris
ENSJJAG00000022406	Pabpc1l	99	65.630	ENSCAFG00020013828	PABPC1L	99	68.807	Canis_lupus_dingo
ENSJJAG00000022406	Pabpc1l	97	63.123	ENSCHIG00000025759	PABPC1L	86	65.945	Capra_hircus
ENSJJAG00000022406	Pabpc1l	99	64.321	ENSTSYG00000006645	PABPC1L	97	70.833	Carlito_syrichta
ENSJJAG00000022406	Pabpc1l	99	69.573	ENSCAPG00000014519	PABPC1L	95	69.630	Cavia_aperea
ENSJJAG00000022406	Pabpc1l	99	66.937	ENSCPOG00000013633	PABPC1L	99	69.147	Cavia_porcellus
ENSJJAG00000022406	Pabpc1l	99	64.321	ENSCCAG00000023338	PABPC1L	99	68.073	Cebus_capucinus
ENSJJAG00000022406	Pabpc1l	99	64.773	ENSCATG00000034065	PABPC1L	99	68.545	Cercocebus_atys
ENSJJAG00000022406	Pabpc1l	99	66.830	ENSCLAG00000005298	PABPC1L	99	69.328	Chinchilla_lanigera
ENSJJAG00000022406	Pabpc1l	99	66.396	ENSCSAG00000014242	PABPC1L	99	68.909	Chlorocebus_sabaeus
ENSJJAG00000022406	Pabpc1l	55	38.889	ENSCPBG00000007810	-	81	38.889	Chrysemys_picta_bellii
ENSJJAG00000022406	Pabpc1l	67	57.273	ENSCPBG00000017755	-	99	61.497	Chrysemys_picta_bellii
ENSJJAG00000022406	Pabpc1l	97	47.746	ENSCING00000002796	-	97	47.746	Ciona_intestinalis
ENSJJAG00000022406	Pabpc1l	97	43.522	ENSCSAVG00000003102	-	99	54.000	Ciona_savignyi
ENSJJAG00000022406	Pabpc1l	97	46.358	ENSCSAVG00000004246	-	96	47.458	Ciona_savignyi
ENSJJAG00000022406	Pabpc1l	99	61.120	ENSCANG00000037530	PABPC1L	99	64.222	Colobus_angolensis_palliatus
ENSJJAG00000022406	Pabpc1l	99	73.650	ENSCGRG00001021938	Pabpc1l	99	76.374	Cricetulus_griseus_chok1gshd
ENSJJAG00000022406	Pabpc1l	99	73.650	ENSCGRG00000007946	Pabpc1l	99	76.374	Cricetulus_griseus_crigri
ENSJJAG00000022406	Pabpc1l	99	47.974	ENSCSEG00000021295	pabpc1l	83	49.546	Cynoglossus_semilaevis
ENSJJAG00000022406	Pabpc1l	99	51.994	ENSCVAG00000015943	-	99	53.476	Cyprinodon_variegatus
ENSJJAG00000022406	Pabpc1l	99	53.270	ENSDARG00000002597	pabpc1l	99	55.080	Danio_rerio
ENSJJAG00000022406	Pabpc1l	99	66.174	ENSDNOG00000048450	PABPC1L	98	69.358	Dasypus_novemcinctus
ENSJJAG00000022406	Pabpc1l	99	67.208	ENSDORG00000001067	Pabpc1l	99	70.182	Dipodomys_ordii
ENSJJAG00000022406	Pabpc1l	94	59.406	ENSETEG00000009969	PABPC1L	72	59.406	Echinops_telfairi
ENSJJAG00000022406	Pabpc1l	54	47.938	ENSEASG00005023408	-	99	47.938	Equus_asinus_asinus
ENSJJAG00000022406	Pabpc1l	61	77.019	ENSEASG00005023407	-	65	77.019	Equus_asinus_asinus
ENSJJAG00000022406	Pabpc1l	60	71.255	ENSECAG00000040139	-	85	71.255	Equus_caballus
ENSJJAG00000022406	Pabpc1l	99	63.029	ENSEEUG00000005978	PABPC1L	99	65.876	Erinaceus_europaeus
ENSJJAG00000022406	Pabpc1l	99	52.932	ENSELUG00000001811	pabpc1l	99	56.911	Esox_lucius
ENSJJAG00000022406	Pabpc1l	99	65.635	ENSFCAG00000011692	PABPC1L	99	68.796	Felis_catus
ENSJJAG00000022406	Pabpc1l	87	56.458	ENSFALG00000005372	PABPC1L	90	56.458	Ficedula_albicollis
ENSJJAG00000022406	Pabpc1l	99	63.695	ENSFDAG00000008291	PABPC1L	99	66.062	Fukomys_damarensis
ENSJJAG00000022406	Pabpc1l	99	51.506	ENSFHEG00000003398	pabpc1l	99	52.920	Fundulus_heteroclitus
ENSJJAG00000022406	Pabpc1l	99	52.330	ENSGMOG00000004437	pabpc1l	99	52.228	Gadus_morhua
ENSJJAG00000022406	Pabpc1l	99	58.824	ENSGALG00000004123	PABPC1L	99	63.897	Gallus_gallus
ENSJJAG00000022406	Pabpc1l	99	48.851	ENSGAFG00000021057	pabpc1l	99	49.915	Gambusia_affinis
ENSJJAG00000022406	Pabpc1l	99	50.239	ENSGACG00000002792	pabpc1l	99	52.043	Gasterosteus_aculeatus
ENSJJAG00000022406	Pabpc1l	99	55.943	ENSGAGG00000000589	PABPC1L	98	58.053	Gopherus_agassizii
ENSJJAG00000022406	Pabpc1l	99	64.123	ENSGGOG00000004584	PABPC1L	99	68.000	Gorilla_gorilla
ENSJJAG00000022406	Pabpc1l	99	50.478	ENSHBUG00000006134	pabpc1l	99	51.681	Haplochromis_burtoni
ENSJJAG00000022406	Pabpc1l	99	68.137	ENSHGLG00000008434	PABPC1L	99	70.513	Heterocephalus_glaber_female
ENSJJAG00000022406	Pabpc1l	99	68.137	ENSHGLG00100012151	PABPC1L	99	70.513	Heterocephalus_glaber_male
ENSJJAG00000022406	Pabpc1l	55	44.670	ENSHGLG00100019506	-	95	44.670	Heterocephalus_glaber_male
ENSJJAG00000022406	Pabpc1l	98	53.476	ENSHCOG00000009270	pabpc1l	99	53.476	Hippocampus_comes
ENSJJAG00000022406	Pabpc1l	55	37.931	ENSIPUG00000006760	-	88	37.931	Ictalurus_punctatus
ENSJJAG00000022406	Pabpc1l	99	53.228	ENSIPUG00000012602	pabpc1l	99	55.240	Ictalurus_punctatus
ENSJJAG00000022406	Pabpc1l	55	37.931	ENSIPUG00000006780	-	85	37.931	Ictalurus_punctatus
ENSJJAG00000022406	Pabpc1l	99	67.267	ENSSTOG00000003739	PABPC1L	99	70.315	Ictidomys_tridecemlineatus
ENSJJAG00000022406	Pabpc1l	99	51.685	ENSKMAG00000016847	pabpc1l	99	53.526	Kryptolebias_marmoratus
ENSJJAG00000022406	Pabpc1l	99	51.978	ENSLBEG00000010084	pabpc1l	99	51.832	Labrus_bergylta
ENSJJAG00000022406	Pabpc1l	99	54.145	ENSLACG00000005762	PABPC1L	99	54.357	Latimeria_chalumnae
ENSJJAG00000022406	Pabpc1l	99	52.885	ENSLOCG00000007519	pabpc1l	98	54.480	Lepisosteus_oculatus
ENSJJAG00000022406	Pabpc1l	99	64.904	ENSLAFG00000003553	PABPC1L	99	68.280	Loxodonta_africana
ENSJJAG00000022406	Pabpc1l	99	64.610	ENSMFAG00000040365	PABPC1L	99	68.364	Macaca_fascicularis
ENSJJAG00000022406	Pabpc1l	99	62.945	ENSMNEG00000032298	PABPC1L	99	66.486	Macaca_nemestrina
ENSJJAG00000022406	Pabpc1l	99	64.773	ENSMLEG00000043139	PABPC1L	99	68.545	Mandrillus_leucophaeus
ENSJJAG00000022406	Pabpc1l	96	51.067	ENSMAMG00000011854	pabpc1l	93	52.216	Mastacembelus_armatus
ENSJJAG00000022406	Pabpc1l	99	50.637	ENSMZEG00005023713	pabpc1l	99	51.957	Maylandia_zebra
ENSJJAG00000022406	Pabpc1l	99	58.824	ENSMGAG00000003674	PABPC1L	98	58.824	Meleagris_gallopavo
ENSJJAG00000022406	Pabpc1l	99	72.295	ENSMOCG00000013186	Pabpc1l	99	74.725	Microtus_ochrogaster
ENSJJAG00000022406	Pabpc1l	99	51.447	ENSMMOG00000020574	-	99	53.273	Mola_mola
ENSJJAG00000022406	Pabpc1l	96	59.500	ENSMODG00000016198	PABPC1L	95	61.448	Monodelphis_domestica
ENSJJAG00000022406	Pabpc1l	99	48.872	ENSMALG00000021622	pabpc1l	99	52.007	Monopterus_albus
ENSJJAG00000022406	Pabpc1l	99	73.191	MGP_CAROLIEiJ_G0024627	Pabpc1l	99	76.384	Mus_caroli
ENSJJAG00000022406	Pabpc1l	99	73.026	ENSMUSG00000054582	Pabpc1l	99	76.199	Mus_musculus
ENSJJAG00000022406	Pabpc1l	99	73.071	MGP_PahariEiJ_G0026071	Pabpc1l	99	76.427	Mus_pahari
ENSJJAG00000022406	Pabpc1l	99	73.191	MGP_SPRETEiJ_G0025549	Pabpc1l	99	76.384	Mus_spretus
ENSJJAG00000022406	Pabpc1l	99	63.183	ENSMPUG00000017646	PABPC1L	99	66.187	Mustela_putorius_furo
ENSJJAG00000022406	Pabpc1l	97	60.743	ENSMLUG00000006324	PABPC1L	97	63.620	Myotis_lucifugus
ENSJJAG00000022406	Pabpc1l	99	75.574	ENSNGAG00000010458	Pabpc1l	99	77.941	Nannospalax_galili
ENSJJAG00000022406	Pabpc1l	99	53.250	ENSNBRG00000016633	pabpc1l	99	53.250	Neolamprologus_brichardi
ENSJJAG00000022406	Pabpc1l	88	54.827	ENSMEUG00000007905	-	89	57.350	Notamacropus_eugenii
ENSJJAG00000022406	Pabpc1l	99	64.182	ENSOPRG00000011846	PABPC1L	99	66.788	Ochotona_princeps
ENSJJAG00000022406	Pabpc1l	99	58.429	ENSODEG00000015482	PABPC1L	82	60.367	Octodon_degus
ENSJJAG00000022406	Pabpc1l	52	42.222	ENSODEG00000002920	-	91	42.222	Octodon_degus
ENSJJAG00000022406	Pabpc1l	99	50.874	ENSONIG00000017314	pabpc1l	99	52.035	Oreochromis_niloticus
ENSJJAG00000022406	Pabpc1l	88	50.515	ENSOANG00000015793	-	99	50.515	Ornithorhynchus_anatinus
ENSJJAG00000022406	Pabpc1l	99	58.986	ENSOCUG00000003005	PABPC1L	99	61.658	Oryctolagus_cuniculus
ENSJJAG00000022406	Pabpc1l	98	54.198	ENSORLG00000010322	pabpc1l	99	54.198	Oryzias_latipes
ENSJJAG00000022406	Pabpc1l	98	54.198	ENSORLG00020021193	pabpc1l	99	54.198	Oryzias_latipes_hni
ENSJJAG00000022406	Pabpc1l	98	54.198	ENSORLG00015017018	pabpc1l	99	54.198	Oryzias_latipes_hsok
ENSJJAG00000022406	Pabpc1l	99	52.665	ENSOMEG00000010789	pabpc1l	99	52.665	Oryzias_melastigma
ENSJJAG00000022406	Pabpc1l	99	63.782	ENSOGAG00000032999	PABPC1L	99	66.548	Otolemur_garnettii
ENSJJAG00000022406	Pabpc1l	99	63.577	ENSOARG00000004578	PABPC1L	99	66.485	Ovis_aries
ENSJJAG00000022406	Pabpc1l	99	63.961	ENSPPAG00000039677	PABPC1L	99	67.636	Pan_paniscus
ENSJJAG00000022406	Pabpc1l	57	46.316	ENSPPRG00000019327	-	97	54.688	Panthera_pardus
ENSJJAG00000022406	Pabpc1l	99	65.902	ENSPTIG00000006524	PABPC1L	99	68.796	Panthera_tigris_altaica
ENSJJAG00000022406	Pabpc1l	99	64.773	ENSPANG00000018788	PABPC1L	99	68.545	Papio_anubis
ENSJJAG00000022406	Pabpc1l	59	44.805	ENSPKIG00000016810	-	91	44.805	Paramormyrops_kingsleyae
ENSJJAG00000022406	Pabpc1l	99	53.418	ENSPKIG00000007322	pabpc1l	99	55.296	Paramormyrops_kingsleyae
ENSJJAG00000022406	Pabpc1l	62	57.908	ENSPSIG00000013289	PABPC1L	97	62.609	Pelodiscus_sinensis
ENSJJAG00000022406	Pabpc1l	56	43.701	ENSPMGG00000023117	pabpc1l	96	43.701	Periophthalmus_magnuspinnatus
ENSJJAG00000022406	Pabpc1l	66	62.176	ENSPMGG00000023121	-	90	62.176	Periophthalmus_magnuspinnatus
ENSJJAG00000022406	Pabpc1l	99	73.727	ENSPEMG00000020671	Pabpc1l	99	76.557	Peromyscus_maniculatus_bairdii
ENSJJAG00000022406	Pabpc1l	99	51.685	ENSPFOG00000013241	pabpc1l	99	52.973	Poecilia_formosa
ENSJJAG00000022406	Pabpc1l	99	51.535	ENSPLAG00000017490	-	99	52.973	Poecilia_latipinna
ENSJJAG00000022406	Pabpc1l	99	50.791	ENSPMEG00000007677	pabpc1l	99	52.113	Poecilia_mexicana
ENSJJAG00000022406	Pabpc1l	62	55.474	ENSPREG00000015886	pabpc1l	99	59.420	Poecilia_reticulata
ENSJJAG00000022406	Pabpc1l	99	64.448	ENSPPYG00000011042	PABPC1L	99	68.364	Pongo_abelii
ENSJJAG00000022406	Pabpc1l	62	79.032	ENSPCAG00000011787	-	74	79.032	Procavia_capensis
ENSJJAG00000022406	Pabpc1l	98	64.415	ENSPCOG00000020630	PABPC1L	99	67.890	Propithecus_coquereli
ENSJJAG00000022406	Pabpc1l	99	63.921	ENSPVAG00000012663	PABPC1L	98	66.423	Pteropus_vampyrus
ENSJJAG00000022406	Pabpc1l	99	53.250	ENSPNYG00000004101	pabpc1l	99	53.250	Pundamilia_nyererei
ENSJJAG00000022406	Pabpc1l	99	47.284	ENSPNAG00000021248	pabpc1l	99	48.195	Pygocentrus_nattereri
ENSJJAG00000022406	Pabpc1l	99	73.355	ENSRNOG00000012750	Pabpc1l	99	76.103	Rattus_norvegicus
ENSJJAG00000022406	Pabpc1l	99	63.799	ENSRBIG00000035381	PABPC1L	99	68.000	Rhinopithecus_bieti
ENSJJAG00000022406	Pabpc1l	99	63.636	ENSRROG00000044498	PABPC1L	99	67.818	Rhinopithecus_roxellana
ENSJJAG00000022406	Pabpc1l	99	65.139	ENSSBOG00000009532	-	99	68.257	Saimiri_boliviensis_boliviensis
ENSJJAG00000022406	Pabpc1l	99	66.122	ENSSHAG00000011446	PABPC1L	99	66.122	Sarcophilus_harrisii
ENSJJAG00000022406	Pabpc1l	99	53.451	ENSSFOG00015017304	pabpc1l	99	55.117	Scleropages_formosus
ENSJJAG00000022406	Pabpc1l	99	50.952	ENSSMAG00000010516	pabpc1l	99	52.837	Scophthalmus_maximus
ENSJJAG00000022406	Pabpc1l	99	51.858	ENSSDUG00000014743	pabpc1l	99	51.858	Seriola_dumerili
ENSJJAG00000022406	Pabpc1l	99	53.652	ENSSLDG00000006981	pabpc1l	94	53.904	Seriola_lalandi_dorsalis
ENSJJAG00000022406	Pabpc1l	100	55.503	ENSSPUG00000004233	PABPC1L	99	57.544	Sphenodon_punctatus
ENSJJAG00000022406	Pabpc1l	99	47.961	ENSSPAG00000017137	pabpc1l	99	49.543	Stegastes_partitus
ENSJJAG00000022406	Pabpc1l	99	63.175	ENSSSCG00000007382	PABPC1L	99	65.505	Sus_scrofa
ENSJJAG00000022406	Pabpc1l	99	54.304	ENSTGUG00000005114	PABPC1L	99	56.195	Taeniopygia_guttata
ENSJJAG00000022406	Pabpc1l	96	50.891	ENSTRUG00000011085	pabpc1l	93	51.515	Takifugu_rubripes
ENSJJAG00000022406	Pabpc1l	99	50.637	ENSTNIG00000017903	pabpc1l	98	51.773	Tetraodon_nigroviridis
ENSJJAG00000022406	Pabpc1l	77	64.433	ENSTBEG00000002851	PABPC1L	79	65.625	Tupaia_belangeri
ENSJJAG00000022406	Pabpc1l	93	62.069	ENSTTRG00000007618	PABPC1L	96	64.764	Tursiops_truncatus
ENSJJAG00000022406	Pabpc1l	99	62.316	ENSUAMG00000017682	PABPC1L	99	65.265	Ursus_americanus
ENSJJAG00000022406	Pabpc1l	62	72.174	ENSUMAG00000025436	PABPC1L	89	72.174	Ursus_maritimus
ENSJJAG00000022406	Pabpc1l	99	67.969	ENSVVUG00000018939	PABPC1L	99	63.091	Vulpes_vulpes
ENSJJAG00000022406	Pabpc1l	99	51.364	ENSXETG00000022831	pabpc1l	98	52.773	Xenopus_tropicalis
ENSJJAG00000022406	Pabpc1l	99	53.865	ENSXCOG00000005459	pabpc1l	99	52.575	Xiphophorus_couchianus
ENSJJAG00000022406	Pabpc1l	99	51.369	ENSXMAG00000017135	pabpc1l	99	52.793	Xiphophorus_maculatus