EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSJJAG00000023002 (Gene tree)
Gene ID: 101606470
Gene Symbol: Cpsf1
Alias: -
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Jaculus_jaculus
Status: putative
Strand: Minus strand
Length: 13023 bases
Position: chrJH725455.1:1676438-1689460
Accession: 101606470
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSJJAP00000023186	CPSF_A	PF03178.15	1.7e-92	1	1
ENSJJAP00000023192	CPSF_A	PF03178.15	1.9e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSJJAT00000029760	-	4513	XM_004656424	ENSJJAP00000023186	1441 (aa)	XP_004656481	UPI000333084A
ENSJJAT00000029766	-	4311	-	ENSJJAP00000023192	1436 (aa)	-	-

Gene Model

Click here to download ENSJJAG00000023002's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSJJAG00000023002's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSJJAG00000023002	Cpsf1	100	96.258	ENSG00000071894	CPSF1	100	96.258	Homo_sapiens
ENSJJAG00000023002	Cpsf1	100	77.823	ENSAPOG00000019621	cpsf1	100	78.026	Acanthochromis_polyacanthus
ENSJJAG00000023002	Cpsf1	97	94.496	ENSAMEG00000005557	CPSF1	100	94.496	Ailuropoda_melanoleuca
ENSJJAG00000023002	Cpsf1	100	78.393	ENSACIG00000006112	cpsf1	100	78.601	Amphilophus_citrinellus
ENSJJAG00000023002	Cpsf1	100	79.270	ENSAOCG00000007120	cpsf1	100	79.477	Amphiprion_ocellaris
ENSJJAG00000023002	Cpsf1	100	79.738	ENSAPEG00000005755	cpsf1	100	80.041	Amphiprion_percula
ENSJJAG00000023002	Cpsf1	100	77.935	ENSATEG00000011097	cpsf1	100	78.340	Anabas_testudineus
ENSJJAG00000023002	Cpsf1	93	81.757	ENSACAG00000009655	CPSF1	100	81.757	Anolis_carolinensis
ENSJJAG00000023002	Cpsf1	100	96.394	ENSANAG00000036514	CPSF1	100	96.394	Aotus_nancymaae
ENSJJAG00000023002	Cpsf1	100	77.832	ENSACLG00000012231	cpsf1	100	77.971	Astatotilapia_calliptera
ENSJJAG00000023002	Cpsf1	100	74.220	ENSAMXG00000008485	cpsf1	100	73.389	Astyanax_mexicanus
ENSJJAG00000023002	Cpsf1	100	94.146	ENSBTAG00000008355	CPSF1	100	94.452	Bos_taurus
ENSJJAG00000023002	Cpsf1	100	32.042	WBGene00022301	cpsf-1	100	40.000	Caenorhabditis_elegans
ENSJJAG00000023002	Cpsf1	100	96.533	ENSCJAG00000021421	CPSF1	100	96.533	Callithrix_jacchus
ENSJJAG00000023002	Cpsf1	97	95.780	ENSCAFG00000001600	CPSF1	100	95.935	Canis_familiaris
ENSJJAG00000023002	Cpsf1	100	95.914	ENSCAFG00020020821	CPSF1	100	95.914	Canis_lupus_dingo
ENSJJAG00000023002	Cpsf1	100	90.675	ENSCHIG00000015833	CPSF1	100	90.625	Capra_hircus
ENSJJAG00000023002	Cpsf1	100	96.810	ENSTSYG00000028560	CPSF1	99	97.953	Carlito_syrichta
ENSJJAG00000023002	Cpsf1	97	95.983	ENSCAPG00000014921	CPSF1	99	95.983	Cavia_aperea
ENSJJAG00000023002	Cpsf1	100	95.562	ENSCPOG00000011448	CPSF1	100	95.562	Cavia_porcellus
ENSJJAG00000023002	Cpsf1	100	96.533	ENSCCAG00000037658	CPSF1	100	96.533	Cebus_capucinus
ENSJJAG00000023002	Cpsf1	100	96.186	ENSCATG00000037234	CPSF1	99	97.910	Cercocebus_atys
ENSJJAG00000023002	Cpsf1	100	97.294	ENSCLAG00000012166	CPSF1	100	97.294	Chinchilla_lanigera
ENSJJAG00000023002	Cpsf1	100	96.325	ENSCSAG00000008502	CPSF1	100	96.325	Chlorocebus_sabaeus
ENSJJAG00000023002	Cpsf1	99	87.815	ENSCPBG00000018910	CPSF1	96	87.815	Chrysemys_picta_bellii
ENSJJAG00000023002	Cpsf1	96	48.533	ENSCING00000000514	-	100	48.461	Ciona_intestinalis
ENSJJAG00000023002	Cpsf1	99	48.660	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSJJAG00000023002	Cpsf1	99	90.833	ENSCANG00000032760	CPSF1	99	90.833	Colobus_angolensis_palliatus
ENSJJAG00000023002	Cpsf1	100	97.779	ENSCGRG00001016344	Cpsf1	100	97.779	Cricetulus_griseus_chok1gshd
ENSJJAG00000023002	Cpsf1	100	95.350	ENSCGRG00000003118	Cpsf1	100	95.350	Cricetulus_griseus_crigri
ENSJJAG00000023002	Cpsf1	100	78.017	ENSCSEG00000013464	cpsf1	100	78.225	Cynoglossus_semilaevis
ENSJJAG00000023002	Cpsf1	86	76.957	ENSCVAG00000014059	cpsf1	100	75.926	Cyprinodon_variegatus
ENSJJAG00000023002	Cpsf1	100	79.669	ENSDARG00000034178	cpsf1	100	79.738	Danio_rerio
ENSJJAG00000023002	Cpsf1	68	96.522	ENSDNOG00000043654	CPSF1	94	96.522	Dasypus_novemcinctus
ENSJJAG00000023002	Cpsf1	97	96.467	ENSDORG00000006278	Cpsf1	99	96.467	Dipodomys_ordii
ENSJJAG00000023002	Cpsf1	100	45.192	FBgn0024698	Cpsf160	100	45.051	Drosophila_melanogaster
ENSJJAG00000023002	Cpsf1	80	96.644	ENSETEG00000006022	CPSF1	83	96.644	Echinops_telfairi
ENSJJAG00000023002	Cpsf1	100	96.537	ENSEASG00005010774	CPSF1	100	96.537	Equus_asinus_asinus
ENSJJAG00000023002	Cpsf1	100	96.537	ENSECAG00000022209	CPSF1	100	96.537	Equus_caballus
ENSJJAG00000023002	Cpsf1	100	95.159	ENSEEUG00000000471	CPSF1	100	95.159	Erinaceus_europaeus
ENSJJAG00000023002	Cpsf1	100	77.930	ENSELUG00000012271	cpsf1	100	78.478	Esox_lucius
ENSJJAG00000023002	Cpsf1	100	97.155	ENSFDAG00000016060	CPSF1	100	97.155	Fukomys_damarensis
ENSJJAG00000023002	Cpsf1	100	77.119	ENSFHEG00000016801	cpsf1	100	77.188	Fundulus_heteroclitus
ENSJJAG00000023002	Cpsf1	100	78.084	ENSGMOG00000000796	cpsf1	100	78.291	Gadus_morhua
ENSJJAG00000023002	Cpsf1	94	85.714	ENSGAFG00000018890	cpsf1	99	85.714	Gambusia_affinis
ENSJJAG00000023002	Cpsf1	100	78.759	ENSGACG00000008703	cpsf1	100	78.748	Gasterosteus_aculeatus
ENSJJAG00000023002	Cpsf1	100	84.152	ENSGAGG00000004276	CPSF1	99	87.250	Gopherus_agassizii
ENSJJAG00000023002	Cpsf1	100	96.322	ENSGGOG00000016185	CPSF1	100	96.322	Gorilla_gorilla
ENSJJAG00000023002	Cpsf1	100	79.778	ENSHBUG00000018900	cpsf1	100	79.917	Haplochromis_burtoni
ENSJJAG00000023002	Cpsf1	100	97.155	ENSHGLG00000016139	CPSF1	100	97.155	Heterocephalus_glaber_female
ENSJJAG00000023002	Cpsf1	100	97.085	ENSHGLG00100009750	CPSF1	100	97.085	Heterocephalus_glaber_male
ENSJJAG00000023002	Cpsf1	100	77.294	ENSHCOG00000018509	cpsf1	100	77.211	Hippocampus_comes
ENSJJAG00000023002	Cpsf1	100	76.616	ENSIPUG00000011259	cpsf1	100	76.616	Ictalurus_punctatus
ENSJJAG00000023002	Cpsf1	97	96.640	ENSSTOG00000009957	CPSF1	99	96.640	Ictidomys_tridecemlineatus
ENSJJAG00000023002	Cpsf1	91	85.893	ENSKMAG00000001940	cpsf1	99	85.893	Kryptolebias_marmoratus
ENSJJAG00000023002	Cpsf1	100	77.509	ENSLBEG00000003601	cpsf1	100	77.913	Labrus_bergylta
ENSJJAG00000023002	Cpsf1	88	81.971	ENSLACG00000000233	CPSF1	100	69.479	Latimeria_chalumnae
ENSJJAG00000023002	Cpsf1	100	78.315	ENSLOCG00000008484	cpsf1	100	78.660	Lepisosteus_oculatus
ENSJJAG00000023002	Cpsf1	97	94.560	ENSLAFG00000022601	CPSF1	100	94.560	Loxodonta_africana
ENSJJAG00000023002	Cpsf1	100	96.186	ENSMFAG00000037013	CPSF1	99	97.612	Macaca_fascicularis
ENSJJAG00000023002	Cpsf1	100	96.255	ENSMMUG00000007380	CPSF1	100	96.255	Macaca_mulatta
ENSJJAG00000023002	Cpsf1	97	96.270	ENSMNEG00000043564	CPSF1	100	96.270	Macaca_nemestrina
ENSJJAG00000023002	Cpsf1	100	96.186	ENSMLEG00000043010	CPSF1	99	97.612	Mandrillus_leucophaeus
ENSJJAG00000023002	Cpsf1	100	78.567	ENSMAMG00000003803	cpsf1	100	78.769	Mastacembelus_armatus
ENSJJAG00000023002	Cpsf1	100	77.971	ENSMZEG00005001168	cpsf1	100	78.110	Maylandia_zebra
ENSJJAG00000023002	Cpsf1	100	97.502	ENSMAUG00000003601	Cpsf1	100	97.502	Mesocricetus_auratus
ENSJJAG00000023002	Cpsf1	100	96.669	ENSMICG00000015767	CPSF1	100	96.669	Microcebus_murinus
ENSJJAG00000023002	Cpsf1	100	97.571	ENSMOCG00000022758	Cpsf1	100	97.571	Microtus_ochrogaster
ENSJJAG00000023002	Cpsf1	100	79.239	ENSMMOG00000021245	cpsf1	100	79.377	Mola_mola
ENSJJAG00000023002	Cpsf1	100	92.823	ENSMODG00000010755	CPSF1	100	92.823	Monodelphis_domestica
ENSJJAG00000023002	Cpsf1	100	77.725	ENSMALG00000020545	cpsf1	100	77.928	Monopterus_albus
ENSJJAG00000023002	Cpsf1	100	97.918	MGP_CAROLIEiJ_G0019936	Cpsf1	100	97.918	Mus_caroli
ENSJJAG00000023002	Cpsf1	100	97.779	ENSMUSG00000034022	Cpsf1	100	97.779	Mus_musculus
ENSJJAG00000023002	Cpsf1	100	97.918	MGP_PahariEiJ_G0019946	Cpsf1	100	97.918	Mus_pahari
ENSJJAG00000023002	Cpsf1	100	97.849	MGP_SPRETEiJ_G0020839	Cpsf1	100	97.849	Mus_spretus
ENSJJAG00000023002	Cpsf1	94	95.775	ENSMPUG00000006419	CPSF1	93	95.775	Mustela_putorius_furo
ENSJJAG00000023002	Cpsf1	100	98.196	ENSNGAG00000022460	Cpsf1	100	98.196	Nannospalax_galili
ENSJJAG00000023002	Cpsf1	100	75.208	ENSNBRG00000000813	cpsf1	100	75.208	Neolamprologus_brichardi
ENSJJAG00000023002	Cpsf1	86	84.926	ENSNLEG00000010633	-	100	87.963	Nomascus_leucogenys
ENSJJAG00000023002	Cpsf1	82	96.512	ENSMEUG00000014922	CPSF1	85	96.512	Notamacropus_eugenii
ENSJJAG00000023002	Cpsf1	61	96.939	ENSOPRG00000004693	-	71	96.939	Ochotona_princeps
ENSJJAG00000023002	Cpsf1	100	97.294	ENSODEG00000013995	CPSF1	100	97.294	Octodon_degus
ENSJJAG00000023002	Cpsf1	100	80.194	ENSONIG00000007676	cpsf1	100	80.332	Oreochromis_niloticus
ENSJJAG00000023002	Cpsf1	58	90.714	ENSOANG00000010716	CPSF1	88	90.714	Ornithorhynchus_anatinus
ENSJJAG00000023002	Cpsf1	100	77.634	ENSORLG00000013544	cpsf1	92	86.831	Oryzias_latipes
ENSJJAG00000023002	Cpsf1	100	77.770	ENSORLG00020021693	cpsf1	92	86.831	Oryzias_latipes_hni
ENSJJAG00000023002	Cpsf1	100	77.619	ENSORLG00015009979	cpsf1	100	77.687	Oryzias_latipes_hsok
ENSJJAG00000023002	Cpsf1	100	77.725	ENSOMEG00000011849	cpsf1	100	77.929	Oryzias_melastigma
ENSJJAG00000023002	Cpsf1	100	96.533	ENSOGAG00000000315	CPSF1	100	96.533	Otolemur_garnettii
ENSJJAG00000023002	Cpsf1	100	96.325	ENSPPAG00000019280	CPSF1	100	96.325	Pan_paniscus
ENSJJAG00000023002	Cpsf1	100	94.683	ENSPTRG00000051253	-	100	94.683	Pan_troglodytes
ENSJJAG00000023002	Cpsf1	100	96.325	ENSPTRG00000049288	-	100	96.325	Pan_troglodytes
ENSJJAG00000023002	Cpsf1	97	96.126	ENSPANG00000015005	CPSF1	100	96.126	Papio_anubis
ENSJJAG00000023002	Cpsf1	100	80.638	ENSPKIG00000002582	cpsf1	100	81.032	Paramormyrops_kingsleyae
ENSJJAG00000023002	Cpsf1	100	92.754	ENSPCIG00000009035	CPSF1	100	92.754	Phascolarctos_cinereus
ENSJJAG00000023002	Cpsf1	100	76.574	ENSPFOG00000012870	cpsf1	100	76.574	Poecilia_formosa
ENSJJAG00000023002	Cpsf1	100	76.455	ENSPREG00000016307	cpsf1	100	76.522	Poecilia_reticulata
ENSJJAG00000023002	Cpsf1	100	88.280	ENSPPYG00000018973	CPSF1	100	88.280	Pongo_abelii
ENSJJAG00000023002	Cpsf1	91	94.602	ENSPCAG00000011541	CPSF1	94	94.602	Procavia_capensis
ENSJJAG00000023002	Cpsf1	100	92.580	ENSPCOG00000020001	CPSF1	100	92.580	Propithecus_coquereli
ENSJJAG00000023002	Cpsf1	91	98.286	ENSPVAG00000006761	CPSF1	91	98.286	Pteropus_vampyrus
ENSJJAG00000023002	Cpsf1	100	78.742	ENSPNYG00000004906	cpsf1	100	78.879	Pundamilia_nyererei
ENSJJAG00000023002	Cpsf1	100	75.589	ENSPNAG00000024395	cpsf1	100	75.589	Pygocentrus_nattereri
ENSJJAG00000023002	Cpsf1	100	98.057	ENSRNOG00000030705	Cpsf1	100	98.057	Rattus_norvegicus
ENSJJAG00000023002	Cpsf1	100	96.325	ENSRBIG00000044907	CPSF1	100	96.325	Rhinopithecus_bieti
ENSJJAG00000023002	Cpsf1	100	96.255	ENSRROG00000044861	CPSF1	100	96.255	Rhinopithecus_roxellana
ENSJJAG00000023002	Cpsf1	97	96.341	ENSSBOG00000027177	CPSF1	100	96.341	Saimiri_boliviensis_boliviensis
ENSJJAG00000023002	Cpsf1	100	92.754	ENSSHAG00000006500	CPSF1	100	92.754	Sarcophilus_harrisii
ENSJJAG00000023002	Cpsf1	100	78.054	ENSSFOG00015004606	cpsf1	100	81.150	Scleropages_formosus
ENSJJAG00000023002	Cpsf1	100	77.928	ENSSMAG00000020547	cpsf1	100	78.064	Scophthalmus_maximus
ENSJJAG00000023002	Cpsf1	100	79.736	ENSSDUG00000001100	cpsf1	100	80.083	Seriola_dumerili
ENSJJAG00000023002	Cpsf1	100	80.139	ENSSLDG00000003619	cpsf1	100	80.208	Seriola_lalandi_dorsalis
ENSJJAG00000023002	Cpsf1	89	97.917	ENSSARG00000003643	CPSF1	92	97.917	Sorex_araneus
ENSJJAG00000023002	Cpsf1	96	87.815	ENSSPUG00000014396	CPSF1	100	87.815	Sphenodon_punctatus
ENSJJAG00000023002	Cpsf1	100	78.011	ENSSPAG00000005349	cpsf1	100	78.214	Stegastes_partitus
ENSJJAG00000023002	Cpsf1	100	95.291	ENSSSCG00000005906	CPSF1	100	95.291	Sus_scrofa
ENSJJAG00000023002	Cpsf1	96	78.027	ENSTRUG00000013134	cpsf1	99	78.191	Takifugu_rubripes
ENSJJAG00000023002	Cpsf1	100	78.557	ENSTNIG00000014027	cpsf1	100	78.625	Tetraodon_nigroviridis
ENSJJAG00000023002	Cpsf1	77	88.448	ENSTBEG00000001756	CPSF1	91	88.448	Tupaia_belangeri
ENSJJAG00000023002	Cpsf1	90	96.718	ENSTTRG00000001937	CPSF1	90	96.718	Tursiops_truncatus
ENSJJAG00000023002	Cpsf1	97	96.209	ENSUAMG00000006476	CPSF1	98	96.209	Ursus_americanus
ENSJJAG00000023002	Cpsf1	100	77.809	ENSXCOG00000003608	cpsf1	100	78.017	Xiphophorus_couchianus
ENSJJAG00000023002	Cpsf1	100	77.285	ENSXMAG00000005798	cpsf1	100	77.355	Xiphophorus_maculatus